EsuBft1980_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1980_6a-0001
Unique Name	EsuBft1980_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_329	contig	Scaffold_329:93309..94603 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	40559.M7U181
ProteomeId	EsuBft1980_6
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4751\|Fungi
Length	1295
Hectar predicted targeting category	other localisation
Evalue	7.06e-32
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota,20YYK@147548\|Leotiomycetes
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0005515
EC	3.1
GO	0003824
GO	0097159
GO	1901363
GO	0004518
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a	EsuBft1980_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_329 93309..94603 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a-0001-exon	EsuBft1980_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_329 93309..94603 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a-0001-exon	agat-three_prime_utr-7427	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_329 93309..94008 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a-0001-cds	EsuBft1980_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_329 94009..94551 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a-0001-exon	agat-five_prime_utr-4843	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_329 94552..94603 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1980_6a-0001	EsuBft1980_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_329 94009..94551 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_329:93309..94603-
coding sequence from alignment at Scaffold_329:93309..94603-

spliced messenger RNA

>EsuBft1980_6a-0001 ID=EsuBft1980_6a-0001|Name=EsuBft1980_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1295bp|location=Sequence derived from alignment at Scaffold_329:93309..94603- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGTTCGGCTTTCCTACGAAGGCCAAGGCCCGACTTGTTGCAAGAGGAG
ATATGCAGAAGGAATACATTGACTTTGGTGATTTGTATGCCCCCACTGTA
GCTTCGTCTAGTGTCCGAATGTTGGCAGCTTTGGCGTGTGAGCTTGACTT
GGAGTTGTGTCATTTCGATATCGATCAGGCATTTGTGAGGGCCCCTCTCA
AGGAAGACATTTTCATGCGATTGCCGGAAGGATGTGGTGCGTTATCGGGG
AAGATTGTGCAGTTGAACAAGAGTCTTTACGGTTTGAGGCAGGCATCTAG
GGAGTGGTACGCGTTGCTGAAGAAGTGTCTTTTGGCTTTGGGTTTCGAGC
AGTGCATGGCCGATTCGTGTGTTTTTAGTTTAGTCGAAAAGGGGGAAGTA
GTGTTGATCCTAGCAGTACACGTAGACGACATTTTTGCAGTGGGGACGAA
GGAGAGGTGTGATCAATTTGGAAAGGACCTGGGCGAGTACGTACCGGTGA
AGTCTCTGGGGGAGTTGCAGTGGTACTCCGGTTGCTATTACGAGAGGGAC
AGAGAGGCAGCTAGATTGACGATTTCGCAGGAGACATACACTTAGGAGTT
GGGAGAGAGATATGGTGTGGAGTGGGGCGGAGGCATTCCTTTGCCCACGA
CTTGGAGACTTTGGGACTTTGACGTGAATGAGCCGAGCGTGGAGTACCCA
TTTCGCGCGCTGATTGGTTCGTTGCTATGGATAGCTTTGTTGACTAGGCC
GGATATCGCCAATGCAGTGAGGGCAGTGGCGAGGTACTGTAGTGAACCCA
AGTTGATCCACTGGAAGGCTGCACTTAGCATTTTAGGGTATGCAGTTAGG
ACTAGTTCTTTCGGGATTTCTTTTCAGAGGGGGACGGTTTCAGGATTTTC
TTTGATCACGTTCGCCGACGCGGACTACGCCTCGCGTGCGGCGGATCGCA
GGTCGGTTTCAGGGGGAGTGGTAATGTGTGCAGGGGGAGCGATCGCATGG
TTTTCCAAGACTCAGAAGTGTGTGACTTTGTCCACCACGCAGGCAGAGTA
CGTGGCGATGGCGGATATGGGGAAGGAAATTCTTTTTCTGAGGCAGGTTT
GGCGCTTTATGTTGCCGAAGGAGTTGCGGCCGTGCATTCCACTGTACGAG
GATAATGAGGGTGCTATCCAGATCGCAAAACACCCGATCTCGAATTCCAA
CTCGAAGCACATCGACGTGCGGCATCACTTCCTCAGACAACTGGTAGATG
AGAAGGAGGTAGAGATCATTCAAGTAGCGTCGCAGTAGCAGCATG

protein sequence of EsuBft1980_6a-0001

>EsuBft1980_6 ID=EsuBft1980_6|Name=EsuBft1980_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLK
EDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQ
CMADSCVFSLVEKGEVVLILAVHVDDIFAVGTKERCDQFGKDLGEYVPVK
SLGELQWYSGCYYERDREAARLTISQETYT

mRNA from alignment at Scaffold_329:93309..94603-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1980_6a-0001 ID=EsuBft1980_6a-0001|Name=EsuBft1980_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1295bp|location=Sequence derived from alignment at Scaffold_329:93309..94603- (Ectocarpus subulatus male Bft15b)
TGCGTTCGGCTTTCCTACGAAGGCCAAGGCCCGACTTGTTGCAAGAGGAG
ATATGCAGAAGGAATACATTGACTTTGGTGATTTGTATGCCCCCACTGTA
GCTTCGTCTAGTGTCCGAATGTTGGCAGCTTTGGCGTGTGAGCTTGACTT
GGAGTTGTGTCATTTCGATATCGATCAGGCATTTGTGAGGGCCCCTCTCA
AGGAAGACATTTTCATGCGATTGCCGGAAGGATGTGGTGCGTTATCGGGG
AAGATTGTGCAGTTGAACAAGAGTCTTTACGGTTTGAGGCAGGCATCTAG
GGAGTGGTACGCGTTGCTGAAGAAGTGTCTTTTGGCTTTGGGTTTCGAGC
AGTGCATGGCCGATTCGTGTGTTTTTAGTTTAGTCGAAAAGGGGGAAGTA
GTGTTGATCCTAGCAGTACACGTAGACGACATTTTTGCAGTGGGGACGAA
GGAGAGGTGTGATCAATTTGGAAAGGACCTGGGCGAGTACGTACCGGTGA
AGTCTCTGGGGGAGTTGCAGTGGTACTCCGGTTGCTATTACGAGAGGGAC
AGAGAGGCAGCTAGATTGACGATTTCGCAGGAGACATACACTTAGGAGTT
GGGAGAGAGATATGGTGTGGAGTGGGGCGGAGGCATTCCTTTGCCCACGA
CTTGGAGACTTTGGGACTTTGACGTGAATGAGCCGAGCGTGGAGTACCCA
TTTCGCGCGCTGATTGGTTCGTTGCTATGGATAGCTTTGTTGACTAGGCC
GGATATCGCCAATGCAGTGAGGGCAGTGGCGAGGTACTGTAGTGAACCCA
AGTTGATCCACTGGAAGGCTGCACTTAGCATTTTAGGGTATGCAGTTAGG
ACTAGTTCTTTCGGGATTTCTTTTCAGAGGGGGACGGTTTCAGGATTTTC
TTTGATCACGTTCGCCGACGCGGACTACGCCTCGCGTGCGGCGGATCGCA
GGTCGGTTTCAGGGGGAGTGGTAATGTGTGCAGGGGGAGCGATCGCATGG
TTTTCCAAGACTCAGAAGTGTGTGACTTTGTCCACCACGCAGGCAGAGTA
CGTGGCGATGGCGGATATGGGGAAGGAAATTCTTTTTCTGAGGCAGGTTT
GGCGCTTTATGTTGCCGAAGGAGTTGCGGCCGTGCATTCCACTGTACGAG
GATAATGAGGGTGCTATCCAGATCGCAAAACACCCGATCTCGAATTCCAA
CTCGAAGCACATCGACGTGCGGCATCACTTCCTCAGACAACTGGTAGATG
AGAAGGAGGTAGAGATCATTCAAGTAGCGTCGCAGTAGCAGCATG

Coding sequence (CDS) from alignment at Scaffold_329:93309..94603-

>EsuBft1980_6a-0001 ID=EsuBft1980_6a-0001|Name=EsuBft1980_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_329:93309..94603- (Ectocarpus subulatus male Bft15b)
ATGCAGAAGGAATACATTGACTTTGGTGATTTGTATGCCCCCACTGTAGC
TTCGTCTAGTGTCCGAATGTTGGCAGCTTTGGCGTGTGAGCTTGACTTGG
AGTTGTGTCATTTCGATATCGATCAGGCATTTGTGAGGGCCCCTCTCAAG
GAAGACATTTTCATGCGATTGCCGGAAGGATGTGGTGCGTTATCGGGGAA
GATTGTGCAGTTGAACAAGAGTCTTTACGGTTTGAGGCAGGCATCTAGGG
AGTGGTACGCGTTGCTGAAGAAGTGTCTTTTGGCTTTGGGTTTCGAGCAG
TGCATGGCCGATTCGTGTGTTTTTAGTTTAGTCGAAAAGGGGGAAGTAGT
GTTGATCCTAGCAGTACACGTAGACGACATTTTTGCAGTGGGGACGAAGG
AGAGGTGTGATCAATTTGGAAAGGACCTGGGCGAGTACGTACCGGTGAAG
TCTCTGGGGGAGTTGCAGTGGTACTCCGGTTGCTATTACGAGAGGGACAG
AGAGGCAGCTAGATTGACGATTTCGCAGGAGACATACACTTAG