EsuBft1944_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1944_8a-0001
Unique NameEsuBft1944_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:163435..164379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1944_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length67
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_8aEsuBft1944_8aEctocarpus subulatus male Bft15bgeneScaffold_68 163435..164379 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_8a-0001-exonEsuBft1944_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 163435..163925 +
EsuBft1944_8a-0001-exonagat-exon-72352Ectocarpus subulatus male Bft15bexonScaffold_68 164193..164379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_8a-0001-cdsEsuBft1944_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 163435..163605 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_8a-0001-exonagat-three_prime_utr-7226Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 163606..163925 +
EsuBft1944_8a-0001-exonagat-three_prime_utr-7227Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 164193..164379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_8a-0001EsuBft1944_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 163435..163605 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1944_8a-0001 ID=EsuBft1944_8a-0001|Name=EsuBft1944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=678bp|location=Sequence derived from alignment at Scaffold_68:163435..164379+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGTCTATTGAAGGCCACACTTGATGGCGAGATAAAGTGTAGTGA
AGCCTTGGACACTTTCGCCCCAAACCACCGCCAGTGGGTACTCGCACATC
TGCTCGGCCGTGAACTGACTTCCATGGTTGGGATTACGTCCGGCCTAGCT
GATCTTTCCGGCTGTCCGTAATCGTGCTCACCAGGTATTCTGGTACTGGG
TTGTACTGGGGTTGTCGGCCGTGGGCCGTGACCGATCTACATGTCCCCCC
TGTTTTCAAGGAGGCGTCCACCCGCCGAATAAAAGCGGCGGAACGTACAT
TCATAGAACATAGCACATATTCAGTTCAGCAGTCCCATCTGGTTGAGTTC
AGCAAGGAGCACATTCACCGTGCTCTAGCTCACCTTAAAGAGAGGATCCA
CACGACGAGAGCGGTGCCGTAAAAAGAGGGAACGACAGGGTCCAGCTGTT
CCCCACTTACTACCGCGCTTGCAGAAAACTGCAAAGAAAAGGCCCCCTAG
ACTACACGATGACGCAGACGGACCGCAAGGCTCTGGTTGCCCTATACAAC
GCGACCGGTGGGGCCAAGTGGGAAGACACGCGAAACTGGAACACTAGTGC
CGTCCTCTCGCAATGGTACGGAGTCGAAGTCAACTCCCAGGGCCGCGTGG
TGAAGTTATCTCTGGGGGTCAACAACCT
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protein sequence of EsuBft1944_8a-0001

>EsuBft1944_8 ID=EsuBft1944_8|Name=EsuBft1944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MTCLLKATLDGEIKCSEALDTFAPNHRQWVLAHLLGRELTSMVGITSGLA
DLSGCP
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mRNA from alignment at Scaffold_68:163435..164379+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1944_8a-0001 ID=EsuBft1944_8a-0001|Name=EsuBft1944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=945bp|location=Sequence derived from alignment at Scaffold_68:163435..164379+ (Ectocarpus subulatus male Bft15b)
ATGACGTGTCTATTGAAGGCCACACTTGATGGCGAGATAAAGTGTAGTGA
AGCCTTGGACACTTTCGCCCCAAACCACCGCCAGTGGGTACTCGCACATC
TGCTCGGCCGTGAACTGACTTCCATGGTTGGGATTACGTCCGGCCTAGCT
GATCTTTCCGGCTGTCCGTAATCGTGCTCACCAGGTATTCTGGTACTGGG
TTGTACTGGGGTTGTCGGCCGTGGGCCGTGACCGATCTACATGTCCCCCC
TGTTTTCAAGGAGGCGTCCACCCGCCGAATAAAAGCGGCGGAACGTACAT
TCATAGAACATAGCACATATTCAGTTCAGCAGTCCCATCTGGTTGAGTTC
AGCAAGGAGCACATTCACCGTGCTCTAGCTCACCTTAAAGAGAGGATCCA
CACGACGAGAGCGGTGCCGTAAAAAGAGGGAACGACAGGGTCCAGCTGTT
CCCCACTTACTACCGCGCTTGCAGAAAACTGCAAAGAAAAGGTGGCTCTA
TTCTGTTCCTCTCTCCTCTCTTTCAGAAACTGGGTTGTTGATCCAGCTGC
AAAGTGTGGCATCGTTCATCATTCACATCGCCGAGATTGTTCGCGCTCGA
AGACATTGTTGTGGTTCTTTGATGCAATCATCCTCTTGTGATGCTGGTGT
GATTCACCACTTCAGTCGCGAGAGACGACCAACAGAAATCGATGGTACGT
GTGCTCGTTGAACGAGCGTTTGTCTTCGCGAACGTCCCGCAAACTTTCGC
GTGTCCAGGCCCCCTAGACTACACGATGACGCAGACGGACCGCAAGGCTC
TGGTTGCCCTATACAACGCGACCGGTGGGGCCAAGTGGGAAGACACGCGA
AACTGGAACACTAGTGCCGTCCTCTCGCAATGGTACGGAGTCGAAGTCAA
CTCCCAGGGCCGCGTGGTGAAGTTATCTCTGGGGGTCAACAACCT
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Coding sequence (CDS) from alignment at Scaffold_68:163435..164379+

>EsuBft1944_8a-0001 ID=EsuBft1944_8a-0001|Name=EsuBft1944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_68:163435..164379+ (Ectocarpus subulatus male Bft15b)
ATGACGTGTCTATTGAAGGCCACACTTGATGGCGAGATAAAGTGTAGTGA
AGCCTTGGACACTTTCGCCCCAAACCACCGCCAGTGGGTACTCGCACATC
TGCTCGGCCGTGAACTGACTTCCATGGTTGGGATTACGTCCGGCCTAGCT
GATCTTTCCGGCTGTCCGTAA
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