EsuBft1944_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1944_7a-0001
Unique NameEsuBft1944_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:173777..175922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LF46
ProteomeIdEsuBft1944_7
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length92
Hectar predicted targeting categorysignal peptide
Evalue9.85e-42
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EC3.2.1.21
CAZyGH1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_7aEsuBft1944_7aEctocarpus subulatus male Bft15bgeneScaffold_68 173777..175922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_7a-0001-exonEsuBft1944_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 173777..173805 +
EsuBft1944_7a-0001-exonagat-exon-72351Ectocarpus subulatus male Bft15bexonScaffold_68 174417..174658 +
EsuBft1944_7a-0001-exonagat-exon-72350Ectocarpus subulatus male Bft15bexonScaffold_68 175267..175922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_7a-0001-cdsEsuBft1944_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 173777..173805 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_7a-0001-exonagat-three_prime_utr-7225Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 175689..175922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_7a-0001EsuBft1944_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 173777..175688 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=927bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTATGTGCATTTGCCGACTTACCTTCCCGTCGCGGTAGTCGGTGA
TGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCGAAGATGTCCAC
GACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACCCATTCACTCTG
GTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTCTCGGTTCGCTT
GGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGTCGACCACAATG
AGGGAAGTGACAGCATGCCAGGTGGAGCAATGCCCAGCCAGCTGCGCCGG
TTGCTTGACGTCCTCGACAGCAGTGTCGGATCGCATGCCCGTAGGCTCGG
TGGTAACCCATGGACTGAACCACCAGAGTCGATCGTGGTCAAAGGTCTGA
AGAATATCAGAGGGTATTTCGAAGACCTGTATGCGGAGCCCTGCCGGATC
AAGCGCAGCAGCGTCAAGGTTGTCCTTGTCGGTCAGGAAGGCGCAGGGAA
AACGAGGTCAGCTATGCGATGGCCCTGCTGTTATCCGTCATCCACTGCTG
CACTCTCACCAAACATTGGTTGGTCGGAATCGTTCGATACAACGCAGTTG
ACACAGTGTGGTATTATTTCAAGCTCGATCAACCATACTACACTCAGTTG
TCGCTTTTCCCCAGAGAATCGTTTGTTTTCTGGAGAGCGGTAGCCACACG
TGCCGTTTCACGCCTGAACCTTCCATGCGCGACTCCGATTGTACTTGGTC
TTGTACCTAGAGTGAGTGAGTGATCGCACCACCTCTAGACCGCGACTCTA
GCAACTCGACCGCTTCAAAGCCGAAAACCTGATGAGAGATGGAAGAACGT
TGTCGACAATATCGTCCAAACCTCTCGTTTAGGGACTGGTGCTCTCTTAG
TTGTGGAGTACTTGAGTTTTGAAAGTC
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protein sequence of EsuBft1944_7a-0001

>EsuBft1944_7 ID=EsuBft1944_7|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MVYVHLPTYLPVAVVGDVILLLTYLLSVSRRCPRPRPSTSLLYLLNPFTL
VRLCLAVYLCLALSVRLAALWDHTQQVQDVDHNEGSDSMPGGAMPSQLRR
LLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEPCRI
KRSSVKVVLVGQEGAGKTRSAMRWPCCYPSSTAALSPNIGWSESFDTTQL
TQCGIISSSINHTTLSCRFSPENRLFSGER
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mRNA from alignment at Scaffold_68:173777..175922+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2146bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTGCATTTGCCGACTTACCTGTAAGTTTGTTGTTGCCTTCA
GGTCGGTGGGGCCCCCCAGCTCGTTTGGTATCAGGCCTGTCTGAAGAGGC
ACAGCGGAAGACCGAAAGTGACAACAATCGTCAATCAGTCCAGCCGATTT
GAATCAGTCGATCCATCCCGTGAACTGATTTTAGCCGAAGAAACTTCACA
GCTTGTTCAAGCCTGTCAGGTGCTCGGAAATTGCGCCTATAGAATGAGAC
AGCACGCAACAAGGGCCATCGCATTTCGGATGCCGAGTGAGCGTTTCCCT
GAGTGGTCGCGCCTTATTTCGGAATGCGTGCAAGCTTGCTGCTTTCCATT
TGTTTTGCATCGAAGGGACCAAAACGGTCTCTGGAGGGTTCGGCAAATGA
CGAGATCTGCCTCACCGATTTCAGCTGAATGAATGAGTTGTTGATGTGCC
TCACCACATTCAATCGTCCAGGAATAGACGAACTCAAAATTCGACGAGGA
GCAGAAACGGGTGCCCCCACACGATTTGGTATGAACTGCCCATGCTGGAG
CTTTGATCAACGGCCGTGTCATTCTTCGTTTTGATACAGGAATAGCCAAG
ACGGTACTCACAAAATTCTCGGTGGGCTTTGAGGCCACAGTCCCGTCGCG
GTAGTCGGTGATGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCG
AAGATGTCCACGACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACC
CATTCACTCTGGTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTC
TCGGTTCGCTTGGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGT
CGACCACAATGAGGGAAGTGACAGCATGCCAGGTATGCTTACATTTAGCA
TGGTGCCCAAAGTAATACCTTCGAGACAGTCAATTGTCTGCCTGCGAGTG
GACCCAGCGGTAATCGACGTAAATTGGAAAACCTCAGTGGCGAACGGACG
TACGTGATGCTGGTTGTCCTCGATGCCAGCAGCAGTTCCATATTGCACTA
AAATTCTCAGCTTGTTGGAGCTCCTATGGGAAGTGTACCATGTGAGGAAT
GAATGTTGGAGTTGAAGGGCAGGCTCAGTCTTTTGGGCAAAGGTGGAACC
CTTGAGGGGCTAATACATCGCCCCACATCTCGTAGCATACCTTTCACACA
CCACGACGTAGGAAGTTCGTTGGTGGTACCTACGGCCTTGTGTGTGGACG
ATGGACTGCTGCGTTATCCAGCCTGTTGTAGCTTTACTGCTGCCTCGTGC
GGTAACGTCTCAATGTGGTCACCCATCGTGCATCAACCACAAGGAAAAAC
TGAATAGTTTACGCGGGGACTACGAACATTGCCAGAGGCAGCTTACTGCT
GGAGTCACTACCCTCTGGCCTCGTGATCACAAGTGGCGCGGGCGATGATA
ATCATCCCATCATGTGCGCGTGCTTTACGTTGCTCGTCAGGTGGAGCAAT
GCCCAGCCAGCTGCGCCGGTTGCTTGACGTCCTCGACAGCAGTGTCGGAT
CGCATGCCCGTAGGCTCGGTGGTAACCCATGGACTGAACCACCAGAGTCG
ATCGTGGTCAAAGGTCTGAAGAATATCAGAGGGTATTTCGAAGACCTGTA
TGCGGAGCCCTGCCGGATCAAGCGCAGCAGCGTCAAGGTTGTCCTTGTCG
GTCAGGAAGGCGCAGGGAAAACGAGGTCAGCTATGCGATGGCCCTGCTGT
TATCCGTCATCCACTGCTGCACTCTCACCAAACATTGGTTGGTCGGAATC
GTTCGATACAACGCAGTTGACACAGTGTGGTATTATTTCAAGCTCGATCA
ACCATACTACACTCAGTTGTCGCTTTTCCCCAGAGAATCGTTTGTTTTCT
GGAGAGCGGTAGCCACACGTGCCGTTTCACGCCTGAACCTTCCATGCGCG
ACTCCGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCACCA
CCTCTAGACCGCGACTCTAGCAACTCGACCGCTTCAAAGCCGAAAACCTG
ATGAGAGATGGAAGAACGTTGTCGACAATATCGTCCAAACCTCTCGTTTA
GGGACTGGTGCTCTCTTAGTTGTGGAGTACTTGAGTTTTGAAAGTC
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Coding sequence (CDS) from alignment at Scaffold_68:173777..175922+

>EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTGCATTTGCCGACTTACCTTCCCGTCGCGGTAGTCGGTGA
TGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCGAAGATGTCCAC
GACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACCCATTCACTCTG
GTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTCTCGGTTCGCTT
GGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGTCGACCACAATG
AGGGAAGTGACAGCATGCCAGGTGGAGCAATGCCCAGCCAGCTGCGCCGG
TTGCTTGACGTCCTCGACAGCAGTGTCGGATCGCATGCCCGTAGGCTCGG
TGGTAACCCATGGACTGAACCACCAGAGTCGATCGTGGTCAAAGGTCTGA
AGAATATCAGAGGGTATTTCGAAGACCTGTATGCGGAGCCCTGCCGGATC
AAGCGCAGCAGCGTCAAGGTTGTCCTTGTCGGTCAGGAAGGCGCAGGGAA
AACGAGGTCAGCTATGCGATGGCCCTGCTGTTATCCGTCATCCACTGCTG
CACTCTCACCAAACATTGGTTGGTCGGAATCGTTCGATACAACGCAGTTG
ACACAGTGTGGTATTATTTCAAGCTCGATCAACCATACTACACTCAGTTG
TCGCTTTTCCCCAGAGAATCGTTTGTTTTCTGGAGAGCGGTAG
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