EsuBft1929_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1929_6a-0001
Unique NameEsuBft1929_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:127086..127642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1929_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length55
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6aEsuBft1929_6aEctocarpus subulatus male Bft15bgeneScaffold_100 127086..127642 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6a-0001-exonEsuBft1929_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 127086..127642 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6a-0001-exonagat-three_prime_utr-7120Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 127086..127289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6a-0001-cdsEsuBft1929_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 127290..127439 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6a-0001-exonagat-five_prime_utr-4666Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 127440..127642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_6a-0001EsuBft1929_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 127290..127439 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1929_6a-0001 ID=EsuBft1929_6a-0001|Name=EsuBft1929_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=557bp|location=Sequence derived from alignment at Scaffold_100:127086..127642- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCCTCCCCTCCCCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTTGT
GAGTCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGTGGGTGGTGT
CCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGC
ACAGACGGTGGTAGTGGCGAGAGGTGTATGTGGACCTTGTCCCCGCGGCA
GCAATGCAAAGCGGCAAACTGCACCTGGTAACCACCGTCGCGGAAAACGT
GGCCCACGAAGCTGGAGGAGCAGAGAGATTCGTAAAAACCACGCGAGTAA
GCACCGTTCGCGGGAGAAGGGAGATAACCGCGGGCGACGCGGGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
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protein sequence of EsuBft1929_6a-0001

>EsuBft1929_6 ID=EsuBft1929_6|Name=EsuBft1929_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MQSGKLHLVTTVAENVAHEAGGAERFVKTTRVSTVRGRREITAGDAGXXX
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mRNA from alignment at Scaffold_100:127086..127642-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1929_6a-0001 ID=EsuBft1929_6a-0001|Name=EsuBft1929_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=557bp|location=Sequence derived from alignment at Scaffold_100:127086..127642- (Ectocarpus subulatus male Bft15b)
CTCCTCCCCTCCCCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTTGT
GAGTCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGTGGGTGGTGT
CCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGC
ACAGACGGTGGTAGTGGCGAGAGGTGTATGTGGACCTTGTCCCCGCGGCA
GCAATGCAAAGCGGCAAACTGCACCTGGTAACCACCGTCGCGGAAAACGT
GGCCCACGAAGCTGGAGGAGCAGAGAGATTCGTAAAAACCACGCGAGTAA
GCACCGTTCGCGGGAGAAGGGAGATAACCGCGGGCGACGCGGGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_100:127086..127642-

>EsuBft1929_6a-0001 ID=EsuBft1929_6a-0001|Name=EsuBft1929_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_100:127086..127642- (Ectocarpus subulatus male Bft15b)
ATGCAAAGCGGCAAACTGCACCTGGTAACCACCGTCGCGGAAAACGTGGC
CCACGAAGCTGGAGGAGCAGAGAGATTCGTAAAAACCACGCGAGTAAGCA
CCGTTCGCGGGAGAAGGGAGATAACCGCGGGCGACGCGGGGNNNNNNNNN
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