EsuBft1929_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1929_5a-0001
Unique NameEsuBft1929_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:142380..147988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYP2
ProteomeIdEsuBft1929_5
Protein domainsSSF51905
Protein domainsPTHR10742
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsPF13450
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsG3DSA
Protein domainsPR00419
Ownerapollo_admin@sb-roscoff.fr
Notezeta-carotene desaturase os:nostoc (strain pcc 7120 utex 2576) gn:crtq pe:3 sv:2 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1349
Hectar predicted targeting categorysignal peptide
Evalue2.45e-149
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-17_000200.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionoxidoreductase activity
COG categoryE
Cross References
External references for this mRNA
DatabaseAccession
GO0071704
GO0009536
GO0016491
GO0044710
GO0044237
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5aEsuBft1929_5aEctocarpus subulatus male Bft15bgeneScaffold_100 142380..147988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5a-0001EsuBft1929_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 142406..147475 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5a-0001-exonagat-exon-17472Ectocarpus subulatus male Bft15bexonScaffold_100 142380..142579 +
EsuBft1929_5a-0001-exonagat-exon-17470Ectocarpus subulatus male Bft15bexonScaffold_100 143878..144017 +
EsuBft1929_5a-0001-exonagat-exon-17471Ectocarpus subulatus male Bft15bexonScaffold_100 144276..144402 +
EsuBft1929_5a-0001-exonagat-exon-17474Ectocarpus subulatus male Bft15bexonScaffold_100 144840..144925 +
EsuBft1929_5a-0001-exonEsuBft1929_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 146199..146310 +
EsuBft1929_5a-0001-exonagat-exon-17473Ectocarpus subulatus male Bft15bexonScaffold_100 147305..147988 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5a-0001-exonagat-five_prime_utr-4665Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 142380..142405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5a-0001-cdsEsuBft1929_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 142406..142579 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_5a-0001-exonagat-three_prime_utr-7119Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 147476..147988 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1929_5a-0001 ID=EsuBft1929_5a-0001|Name=EsuBft1929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1349bp|location=Sequence derived from alignment at Scaffold_100:142380..147988+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAACACAGCAGCAAAGACACCCCAGATGGGCGGCGTGGCTTATGTCTTC
TCCAGGCTAGTGCCTCAAGCTATTTGGGTGCTAGTGTTCCTCTGCAGGAA
TGCAGCCGGGCTCGCGTCTAGCGCTCAAGGCACCGTTAGGGCAGCATCAG
CGAGACGGCCTCAAACAATGTCCAACGCCGGCAAGAAGGGGCAAAGGGAG
GTGGTAGTGATTGGGGGTGGCTGGGCAGGATTCGGGGCGGCATCACACCT
GTCTAGCGCTGGCGTCAAGGTTACCCTGCTGGAGGCGCAGCCATCCGCGG
GAGGATTGGCCGCTGGGTGGGAGACGGCGAAGGGCAAGAGGGTGGAGGTG
GGTATTCACGGCTTTTGGAGATCCTACCGCAACATCGACCGCTTGATAAC
GGAAGAGCTCAGGCTGGATGCACGGAACGTCTTCACTAGATATGAGAGGT
CGGCGCTGCATACGAAGGATGGACTTAGCGTCGTGGCGCCGATTCTGGGC
GAGCTGCCAAGACTCCCAGCTCCTCTTGGGCCGGCGTTGTACCCAATGTT
CCGCCGGTTGGGACTGCCAGACAGAGCGAGCGCACTGGGCTTGATGAAGG
CGTTCTTGGATTTCGACGGTAGCGAGGAGGCATGGCGGCGGTACGACAAG
ATTACAGCCAGAGAGCTTTTTCGAAACGCCGGCGTTTCTCAGCGCTTGTA
CGACGAGTTTCTAGAACCGATGCTGCTGGTGCTGCCGATGTGCCCCGGCG
AAGATTGCAGCGCGGCTGCGGCCCTGAGCTGTTTCCAGTACTTCGCGCTG
GAGCACCAGGTATCTGCATACATCTATCTACGTTGATAGCTGCCTCGACA
TGTAGGGTCGACTATGAATATATGCAGGCATTCGGAACCTTCACATTATT
TTTCACAGCATGAAGCCATATACTCCCGAGCCAGAGACAAAGCAGTGGTT
TGTCACAGAATCCTGTGCTCTCGACGCGCAACGCTGGAAAACCAGGGTAG
TGGTGCACTGGCACCGCCCTCTTTGCGCCTTTTCTGCGTGCGTGCCGTGA
ATCTCGGTCGCGATGCAGCGGCTTGAACATTTTGTTGGTGCTTGAACATT
TTTGGTGGTGATTTGTCTCTTCTGCAAAGGACGTGTGAAAAATCCCTTGT
GTTCTCGCTGTGCCTCTGTCTGCCACCATGGTGCCTTGTTGTCCCCGAGG
GCGACTTCGATGTGCGATGGCTCCGCGGGAGTGCATCCGACCTGATATTC
GCCCCCTGGCTGAGATCAATAGAGAGGGATGGCGGCAAGGTCATCGGAGG
CAAAAGAGTCTCGACCATCCGGTTCAAGGAGTTGCCGGTAGCGGAGGGC
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protein sequence of EsuBft1929_5a-0001

>EsuBft1929_5 ID=EsuBft1929_5|Name=EsuBft1929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MGGVAYVFSRLVPQAIWVLVFLCRNAAGLASSAQGTVRAASARRPQTMSN
AGKKGQREVVVIGGGWAGFGAASHLSSAGVKVTLLEAQPSAGGLAAGWET
AKGKRVEVGIHGFWRSYRNIDRLITEELRLDARNVFTRYERSALHTKDGL
SVVAPILGELPRLPAPLGPALYPMFRRLGLPDRASALGLMKAFLDFDGSE
EAWRRYDKITARELFRNAGVSQRLYDEFLEPMLLVLPMCPGEDCSAAAAL
SCFQYFALEHQVSAYIYLR
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mRNA from alignment at Scaffold_100:142380..147988+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1929_5a-0001 ID=EsuBft1929_5a-0001|Name=EsuBft1929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5609bp|location=Sequence derived from alignment at Scaffold_100:142380..147988+ (Ectocarpus subulatus male Bft15b)
GTAACACAGCAGCAAAGACACCCCAGATGGGCGGCGTGGCTTATGTCTTC
TCCAGGCTAGTGCCTCAAGCTATTTGGGTGCTAGTGTTCCTCTGCAGGAA
TGCAGCCGGGCTCGCGTCTAGCGCTCAAGGCACCGTTAGGGCAGCATCAG
CGAGACGGCCTCAAACAATGTCCAACGCCGGCAAGAAGGGGCAAAGGGAG
GTGCGTGCTGACTGCTGACTTGAGAAAGAGAGAGAAAAGGCCAGCGGGCA
TGGGGCGGCATCGGTGACTATCACGGGTCACTCGGAATCACTCTACCCTA
ATGCTCCAAAATGTCGCCCTCTGAATGATATTTTCGGAAAAAGTGCCGGT
ATTACCCGGTTGTTGCAGCTTCACCCTGTTTTCTGACGCAGTCTACCGTA
TACGACCACAAGATTGCACACCCGGTGGACCGATTTTCAAGCCTCAATTT
GTCAACAGCAGAAAGAGTCACAGCGCCGAAAACGGCGGTGTTGAAGCCGT
GTGGTCGAGGGCTCTCCGAAAACGTATCGTTTCGTTTATGCATCCTCTTG
GTCGTGGAGCAATCGAGCTTGAATCGTATGCGGTGGTGTACAGCAGGACG
TGTTCTCCCGTCTCTCTTTCCCCGAAGTCTCTCTCTCGCTTGCTTGTGAG
CTAACTGCCAACTACCCTCACCCCATGAACCGGCTGAATCACCACGCCTT
CGTCGCTTGATTCTGTACAAAACCATAACCAGCCCGTCTCCCTCTGAGAA
GCACTATTTAATCACCCGATCTACAAGGCGGCAGTTCTCATACTCCCCTA
CCCCTCTCACCCTTCTGCAATGAATGTAGGTCACGGCTCCTGAAAAACAT
CCTCGAGGTTGCGTGCTACCGAGGTTCTACGATGAACATGTCGCAGTGTA
CGCATAATAGGAAGAGAGTTTTCCGGGAATTGTGGAAATTTCAAGTTTGA
TTTGTGGTGCACCCTGCTCCTGTTGCTGCGAACAAGGTTCTCACGTGCGC
TGGCCACGCCATGTAGCTGGCTGGTAGATGAACATGTGCAATGGACATGT
GCAATGAACAGACGCTCCACCGGAACGAACAGCGACATTCACGTCTTCGA
CACGTCTTTGACACGTCTCTGAGGATCGCGAAAGAGGCTACTGTAGGCTG
AAGGGTAAGGTCAACGTATTTCGCGCTCTCTCATTGCCTTGTTCGCGGTA
TGTATCCAGCGAACCGATGAATGAACAGACGCCAAACTTCGCTCTCGTGA
CATAGACCGAAACACTCATTCCCGCTTGTCAATTGGAGAGATCTGCTGAC
AGGGGGACCGCGAACGAGACAGTAAGATGCTGCTGTACCGGTCCAACCTC
CGGATCTAACAAGAGTCCTCGCGTAGAAAACTACAACACTCGTGGCGATG
AGCCAGAGTGTTTCCGATGTCTTGGCCGGTACATGCACCGCGAACTTTGA
TTGGTTTTTGTTGCAACTCTTGAACCTTTCGTTGTTTCGCGAGACCAGGT
GGTAGTGATTGGGGGTGGCTGGGCAGGATTCGGGGCGGCATCACACCTGT
CTAGCGCTGGCGTCAAGGTTACCCTGCTGGAGGCGCAGCCATCCGCGGGA
GGATTGGCCGCTGGGTGGGAGACGGCGAAGGGCAAGAGGTGTGTACGCCA
TTGAAATTGTCGTCATCGGCATCGTCATTGCCTCCAACAATACTTGACGC
CAGGGCAGCAACCCGGCGAGGCAGCATTTGCATGTACACGTAGATGCGGC
ATCCGCGTCGTGCGGATTCCACGTTTCGCCACTTCTGTAACCTAGACTGG
TGGGTAGAGAGTACTTTTCGGCATGAGGTAGGGCGCACCCTGATTCCGAG
ACTATACATTTTCGGATGCCGGCCATACTTTCCCCGCTCGAGGCAGGGTG
GAGGTGGGTATTCACGGCTTTTGGAGATCCTACCGCAACATCGACCGCTT
GATAACGGAAGAGCTCAGGCTGGATGCACGGAACGTCTTCACTAGATATG
AGAGGTCGGCGCTGCATACGAAGGTATGATGCCGCGACCTGCCATACAAC
AACGTCAACACACCCATACTTTTGGAACGGTTTGGGATTTCTTGTTAGTC
TGGTATCCGATCGGTTGTGTGTGTACTGGTTATAGTGGTGGTGCTCGACG
ACGGATTTCATAGATTCTGATGCTGTCCAAAGGTCGCGGAACTAGGGTAA
AGGTAAGGATGATGAAGGCTGGCGATCACGTTCAGAAGGGCTCTGACGGC
CGTGGTCAAGAGAACCCAACGGGGCGAAGGTCAAAGCGCTGCTGCGTTCA
TCACCTATGTCCCCTTGGCAGGGGGCGAGTTTGCATTAGCGTACTATCAG
CACGGTTTGATACTCTTGGCTTCATGCACGCGAAACGACATGATGCCGAC
GACTGAGCAAAAATGTATTGCGCTCCCCCGCGTGCGCTCGGACATCACGT
CGATGGGCAGGATGGACTTAGCGTCGTGGCGCCGATTCTGGGCGAGCTGC
CAAGACTCCCAGCTCCTCTTGGGCCGGCGTTGTACCCAATGTTCCGGTGA
TGCTATTCATTTGTTGTGACCCTATCGATGTTTCTCTCTCTCTCGACCCT
TCTCCCGATTGTTGTTGTTCGGGATACCGCTTCAGCGAAATGTCCCAAGA
ATAGGGCAAATGTAGTATTCATCTGCTGAGCCAGCCGTCGTTGTACCGTG
AACAGACACCAAAGTATACGGCGACGCTTCAGCGGTGCGCACACTCAACA
ACTGCAGCGGGTTGGGCCAAACGACGTAAGGGTGTAGCTGAAGCATCCTG
CAAAGCTCAACACGTACACTCAGTCATGCACTTGGGGGTTGAGGTACTTT
GGGGGGGCGTTCCCACAAGGCGATGTTAGATTACATACTCTCGCAAGAAG
ATATTCTTCCGATCAATCCAGGATCTACCGCCACCTGAAATCGGTATCAC
ATAAGCAACAGCCGGTGATGGTGCTTTCAACAATCTCGGCATAAAACTTG
TTGCTGCTACCCAGCACCATCAGCAGCCACGGTTGTCGTTTTTGCCGGAA
CGTAATGCGGGCCTTTCCGTACGCGATCTTTTCCCCTTAGATCCTTTCTG
TAGAGTTGTTGCTTGACCGTTTGTTTCGCCGTCGTCTGTTGCTTTCGCTG
GAATATGTTGTGTAGCACGTTTCCTCCTTACCGCAAACGACGTGACAGGC
AGCTTTCGCCGCAAGCTGGTATTTGATTATGTGTCTAGCTCGGTACCACC
TGCCACACCTTGAGCCCCTTGAGGCCTGAAGTGTACCCTTTCATAGCCCG
CGATGCCCCGGTGGTCTAGTTGGTATCTTCGGAGTCTTCTAGAGGTCAGG
TCAGGGGTTCGAATTCCGGCGTAAGCGAGCTTTCTTGCAAAGTGGGTTGT
TCTCTCTCTTCCGCTCCTGGCCTAGTGGATAGCGCCAGTTCGTGTGTACA
CAGAGGGAAGAAAGTGGTGAACTCTTCTCGCGTGAAAAATCGAAGGCAAA
TTACCGCAGGAGGAGAGGGTAGAGAGGGGCTCTTCTGTGAGACCACGGGT
TGGAGTAAACGGCACTAGGGCTGTGAGCGCTGATTTGAAGTGAAGAAAAA
GAAAAAATAACTGCTGCTTGGTTTGGCCTGAGCGTGCGGTTCGTTGTTTG
GTAGTGACGTACACACGACATATAACGTTTCTGCGTGAGTTGTTCTCCGC
GAAGGATTTTCGTTTGGTCGTTCACCTCGTCTTGACGAAACGTCGACTGC
ATACACGATAATGATTGGACCGACGCGATCATACCTGGCATTTTCTACCG
TCCTCCGTTACCGTGGCAGCCGGTTGGGACTGCCAGACAGAGCGAGCGCA
CTGGGCTTGATGAAGGCGTTCTTGGATTTCGACGGTAGCGAGGAGGCATG
GCGGCGGTACGACAAGATTACAGCCAGAGAGGTGAGAGGTGGGCCTTGGT
CGAAATATTTCCGAGTAGCAGGGCAGAGAATGAACAACCGCAACCACGGC
CCTACCGGCGCAAAGTTCACAGCAGTCGCCAACATCATCTTCGCCTTGAC
GGTTAAGCTTGAGCTGAACCTGTTGCAGAGCGAGCCGGACCCTTTGCCGA
TTTCCAAGTCCAACTTTACACATGGATTACACTGCAGCCGATCATTTCGC
CAGGATCTGCATGAAATGACGGTGGTCTGAAAAGCTTCAAGTCGCTGTAA
ATGCGTACAATTAAACTGGTATCCAACCTCGTCGCGAATGCTGGGTAGTA
CGAACTGGTTGGTACGAGGCCCTTCCTGAGTCTAGCAGTTAGACGTGGCG
ACAGGTTTGACGGACTCCCTATGCCGCCACCTAAATCCCATTCCCACCTC
TCTGCCCCCCCCCCCTGGTGTTTGCCATCGGGGATGGGTTTTCGTCGCTT
GGCAATGACGTTGTAAAACAAGCCAATTCACTTAGTGAACTCGGCAAACA
GGATACCGTTTTTTTTACCTCTGTTTTTTTTTTGGCGGTAACCATAATGG
TGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAACCCTCCCTCCGCGCAA
GGGGGATGATCACACGACGTTGTGTTAAAATGGCCGAGCACACTCACTCG
AGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAA
AATAAATTAAGTCATACGCAGCTGTCATCCGTACGCAAGGAAGTGATCAC
AAGATGCCGAACACCCTTAAGAGGATGCAGCGCACCCTTCATGCGACTCG
CCGAATACCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGG
CGAGAACCCGGCGTGCTCCGTCGCTTTGTAGGGATCCGAGGTCAGTGGTC
TAACGACTACGGCATGCACGACAATGAGTACACCTCCACCTCTCTGTCCA
CGTTCTGCTCGTGGTTGTGAGGCAGCTTTTTCGAAACGCCGGCGTTTCTC
AGCGCTTGTACGACGAGTTTCTAGAACCGATGCTGCTGGTGCTGCCGATG
TGCCCCGGCGAAGATTGCAGCGCGGCTGCGGCCCTGAGCTGTTTCCAGTA
CTTCGCGCTGGAGCACCAGGTATCTGCATACATCTATCTACGTTGATAGC
TGCCTCGACATGTAGGGTCGACTATGAATATATGCAGGCATTCGGAACCT
TCACATTATTTTTCACAGCATGAAGCCATATACTCCCGAGCCAGAGACAA
AGCAGTGGTTTGTCACAGAATCCTGTGCTCTCGACGCGCAACGCTGGAAA
ACCAGGGTAGTGGTGCACTGGCACCGCCCTCTTTGCGCCTTTTCTGCGTG
CGTGCCGTGAATCTCGGTCGCGATGCAGCGGCTTGAACATTTTGTTGGTG
CTTGAACATTTTTGGTGGTGATTTGTCTCTTCTGCAAAGGACGTGTGAAA
AATCCCTTGTGTTCTCGCTGTGCCTCTGTCTGCCACCATGGTGCCTTGTT
GTCCCCGAGGGCGACTTCGATGTGCGATGGCTCCGCGGGAGTGCATCCGA
CCTGATATTCGCCCCCTGGCTGAGATCAATAGAGAGGGATGGCGGCAAGG
TCATCGGAGGCAAAAGAGTCTCGACCATCCGGTTCAAGGAGTTGCCGGTA
GCGGAGGGC
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Coding sequence (CDS) from alignment at Scaffold_100:142380..147988+

>EsuBft1929_5a-0001 ID=EsuBft1929_5a-0001|Name=EsuBft1929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=810bp|location=Sequence derived from alignment at Scaffold_100:142380..147988+ (Ectocarpus subulatus male Bft15b)
ATGGGCGGCGTGGCTTATGTCTTCTCCAGGCTAGTGCCTCAAGCTATTTG
GGTGCTAGTGTTCCTCTGCAGGAATGCAGCCGGGCTCGCGTCTAGCGCTC
AAGGCACCGTTAGGGCAGCATCAGCGAGACGGCCTCAAACAATGTCCAAC
GCCGGCAAGAAGGGGCAAAGGGAGGTGGTAGTGATTGGGGGTGGCTGGGC
AGGATTCGGGGCGGCATCACACCTGTCTAGCGCTGGCGTCAAGGTTACCC
TGCTGGAGGCGCAGCCATCCGCGGGAGGATTGGCCGCTGGGTGGGAGACG
GCGAAGGGCAAGAGGGTGGAGGTGGGTATTCACGGCTTTTGGAGATCCTA
CCGCAACATCGACCGCTTGATAACGGAAGAGCTCAGGCTGGATGCACGGA
ACGTCTTCACTAGATATGAGAGGTCGGCGCTGCATACGAAGGATGGACTT
AGCGTCGTGGCGCCGATTCTGGGCGAGCTGCCAAGACTCCCAGCTCCTCT
TGGGCCGGCGTTGTACCCAATGTTCCGCCGGTTGGGACTGCCAGACAGAG
CGAGCGCACTGGGCTTGATGAAGGCGTTCTTGGATTTCGACGGTAGCGAG
GAGGCATGGCGGCGGTACGACAAGATTACAGCCAGAGAGCTTTTTCGAAA
CGCCGGCGTTTCTCAGCGCTTGTACGACGAGTTTCTAGAACCGATGCTGC
TGGTGCTGCCGATGTGCCCCGGCGAAGATTGCAGCGCGGCTGCGGCCCTG
AGCTGTTTCCAGTACTTCGCGCTGGAGCACCAGGTATCTGCATACATCTA
TCTACGTTGA
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