EsuBft1929_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1929_2a-0001
Unique NameEsuBft1929_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:164431..166740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85518
ProteomeIdEsuBft1929_2
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR11439
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR013103
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl4776|Peronosporales
Length1914
Hectar predicted targeting categorysignal peptide
Evalue1.67e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionGAG-pre-integrase domain
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_2aEsuBft1929_2aEctocarpus subulatus male Bft15bgeneScaffold_100 164431..166740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_2a-0001-exonagat-exon-17460Ectocarpus subulatus male Bft15bexonScaffold_100 164431..164685 -
EsuBft1929_2a-0001-exonEsuBft1929_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 164907..166084 -
EsuBft1929_2a-0001-exonagat-exon-17459Ectocarpus subulatus male Bft15bexonScaffold_100 166260..166740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_2a-0001-cdsEsuBft1929_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 164431..164685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1929_2a-0001EsuBft1929_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 164431..166740 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1929_2a-0001 ID=EsuBft1929_2a-0001|Name=EsuBft1929_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1914bp|location=Sequence derived from alignment at Scaffold_100:164431..166740- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGAAGCGGCGGCAGC
GGCGGCGACAGCAGCAGCCGCGGTAGCTGCGGCAGCGACAGCGACAGCAG
CAGCGGTGGCAGCAGCGGCGATGACGGCAGCACCGACAGCAGCAGTGGCA
GCAACAGCGAGACGGATCTCCTGGCGCTCCGTGGGCCAGAGGCCCGGCGG
CTCGCCCGCTTCAACAAGCCGGCGGAACTCACCAGCCGCCGCACTTGGGA
GAACCCTCGCCGAAACCCGAGGTACGAGACGTCTCAGTCGCCGACAAGTG
CCGAAGCCCTGCTCGCCTCGGTGCCTGCTCGTCAGCAGCACGGAGGAGTC
TACCAGCTGGATGATCTCGGCGATTCTTCACGTGGCGGAGGGGCTAGATG
CGAGGGCGGCGCGAAAATTGCTGTTCGAGCGCCCGGAAGAGGCTCACGCT
GCGCGCCAAGAGGCGGAGGACTTCCTGCTGGAGTTTGAAGGGCACTTGGG
CACGGGGATGTTTTCATTAGCGCCAGAGGGGCTGCCTATGGGCTCAAAGT
GGTGTTTTTGTTGGAAGACAAACAAGGAAGGAATAATAGAAAAGTTCAAA
GTGCGTCTGGTTGCTAGGGGGGTTTCGCTAGTCCCGAACGTCGATTATTT
CCATCGGTCTTCCCCTTGTCCATCATCCGCATCCATGAAACTGATACTTG
CGGTAGCAAACGAGAAGGGCATGAACCTCAATCACTGGGATGTGAAGCAG
GCGTACACACACGCCACGCTAGACGAGGAGTTTTTTCCGAGGCTTCCCGC
TGGGTGCGGGGACAAATCGCATAAGATTGTTAAGACTGAGCGTGCGATTT
ATGGTCTGCAGCAGAGTAGTAGGCGGTGGGGGTACCACGCTGCTGATACG
CTAGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCG
CAAAATGGTAGACGAAGTTTTGGTGATGATCATCGTGATTTACGTGGATG
ACACCTTGGTGGCTGGGTCTGACGAGGGTTGCGAGGAGTTGCTTGCTTCT
CTCAANCAGCAGAGTAGTAGGCGGTGGGGGTACCACGCTGCTGATACGCT
AGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCGCA
AAATGGTAGACGAAGTTTTGGTGATGATCATCGTGATTTACGTGGATGAC
ACCTTGGTGGCTGGGTCTGACGAGGGTTGCGAGGAGTTGCTTGCTTCTCT
CAAGAAGAAGTTCCCCACCAAAAATCTGGGAGAATGCGACTGGTTTGACG
GGTGTGCCATCAAGAGAGATAACGAGGCTTGGACTCTTGAAATCTCGCAA
ACCGCGTACATCGACAGCATGGTGAAACGCTTAGATGTACAATCGACCTC
CTGCACCCCTGCTTCCCCTCGTGTCGACCTAAGACCGAAGCGAAATGAAG
AGAAGGGGGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGG
GTGTCGACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGC
ACGCCACGCCCACGCCCCGGCGGAAGCAGCACTGGGATGCCATACTGAAG
ATCCTCGGCTACCTGTAAGGGACGAGGGACCTCGGCATCACCTACTTACG
GGAATCTGGAGACCAGTGGTAGCAGCATCCAGGTCCCTTGAGGACAACCA
AGGGGCCATAGCGTTGGTACAGAACCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCATGAATTGTTCAGGTTGAGGGAT
ATTTCGGTCAAGTTCGTTCCGACAACGGAACAACACGCGGACCTCCTAAC
CAAGGCTCTTAGCAGGGCTGGTCTGCAGTACCACCGGCGCAAGTTGATGG
ATTTGGCGGAGTAG
back to top

protein sequence of EsuBft1929_2a-0001

>EsuBft1929_2 ID=EsuBft1929_2|Name=EsuBft1929_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=637bp
MWAAARTTAAAAEAAAAAATAAAAVAAAATATAAAVAAAAMTAAPTAAVA
ATARRISWRSVGQRPGGSPASTSRRNSPAAALGRTLAETRGTRRLSRRQV
PKPCSPRCLLVSSTEESTSWMISAILHVAEGLDARAARKLLFERPEEAHA
ARQEAEDFLLEFEGHLGTGMFSLAPEGLPMGSKWCFCWKTNKEGIIEKFK
VRLVARGVSLVPNVDYFHRSSPCPSSASMKLILAVANEKGMNLNHWDVKQ
AYTHATLDEEFFPRLPAGCGDKSHKIVKTERAIYGLQQSSRRWGYHAADT
LVENGFEQCKADPCVFRKMVDEVLVMIIVIYVDDTLVAGSDEGCEELLAS
LXQQSSRRWGYHAADTLVENGFEQCKADPCVFRKMVDEVLVMIIVIYVDD
TLVAGSDEGCEELLASLKKKFPTKNLGECDWFDGCAIKRDNEAWTLEISQ
TAYIDSMVKRLDVQSTSCTPASPRVDLRPKRNEEKGGEWPVREAIGSMMW
VSTFSRPDVSFAVRAVARHAHAPAEAALGCHTEDPRLPVRDEGPRHHLLT
GIWRPVVAASRSLEDNQGAIALVQNPLSSGRTKHIDVRFHFIHELFRLRD
ISVKFVPTTEQHADLLTKALSRAGLQYHRRKLMDLAE
back to top

mRNA from alignment at Scaffold_100:164431..166740-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1929_2a-0001 ID=EsuBft1929_2a-0001|Name=EsuBft1929_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2310bp|location=Sequence derived from alignment at Scaffold_100:164431..166740- (Ectocarpus subulatus male Bft15b)
ATGTGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGAAGCGGCGGCAGC
GGCGGCGACAGCAGCAGCCGCGGTAGCTGCGGCAGCGACAGCGACAGCAG
CAGCGGTGGCAGCAGCGGCGATGACGGCAGCACCGACAGCAGCAGTGGCA
GCAACAGCGAGACGGATCTCCTGGCGCTCCGTGGGCCAGAGGCCCGGCGG
CTCGCCCGCTTCAACAAGCCGGCGGAACTCACCAGCCGCCGCACTTGGGA
GAACCCTCGCCGAAACCCGAGGTACGAGACGTCTCAGTCGCCGACAAGTG
CCGAAGCCCTGCTCGCCTCGGTGCCTGCTCGTCAGCAGCACGGAGGAGTC
TACCAGCTGGATGATCTCGGCGATTCTTCACGTGGCGGAGGGGCTAGATG
CGAGGGCGGCGCGAAAATTGCTGTTCGAGCGCCCGGAAGAGGCTCACGCT
GCGCGCCAAGAGGCGGAGGACTTCCTGCTGGGTAGGGTGGACCTCATGCT
CAACCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCACGAGCTAAGTGA
ATCCCCCATAGGCAAGCGGCCGAGTGAAGTAGATCCCCCCCCATGACCGT
TGCCGGCGTTGCGAAGTCTGTGTACAGAGAGGGGTGGGAACAGGCCATGA
GGGCAGAGTTTGAAGGGCACTTGGGCACGGGGATGTTTTCATTAGCGCCA
GAGGGGCTGCCTATGGGCTCAAAGTGGTGTTTTTGTTGGAAGACAAACAA
GGAAGGAATAATAGAAAAGTTCAAAGTGCGTCTGGTTGCTAGGGGGGTTT
CGCTAGTCCCGAACGTCGATTATTTCCATCGGTCTTCCCCTTGTCCATCA
TCCGCATCCATGAAACTGATACTTGCGGTAGCAAACGAGAAGGGCATGAA
CCTCAATCACTGGGATGTGAAGCAGGCGTACACACACGCCACGCTAGACG
AGGAGTTTTTTCCGAGGCTTCCCGCTGGGTGCGGGGACAAATCGCATAAG
ATTGTTAAGACTGAGCGTGCGATTTATGGTCTGCAGCAGAGTAGTAGGCG
GTGGGGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAGT
GCAAGGCGGACCCGTGTGTTTTCCGCAAAATGGTAGACGAAGTTTTGGTG
ATGATCATCGTGATTTACGTGGATGACACCTTGGTGGCTGGGTCTGACGA
GGGTTGCGAGGAGTTGCTTGCTTCTCTCAANCAGCAGAGTAGTAGGCGGT
GGGGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAGTGC
AAGGCGGACCCGTGTGTTTTCCGCAAAATGGTAGACGAAGTTTTGGTGAT
GATCATCGTGATTTACGTGGATGACACCTTGGTGGCTGGGTCTGACGAGG
GTTGCGAGGAGTTGCTTGCTTCTCTCAAGAAGAAGTTCCCCACCAAAAAT
CTGGGAGAATGCGACTGGTTTGACGGGTGTGCCATCAAGAGAGATAACGA
GGCTTGGACTCTTGAAATCTCGCAAACCGCGTACATCGACAGCATGGTGA
AACGCTTAGATGTACAATCGACCTCCTGCACCCCTGCTTCCCCTCGTGTC
GACCTAAGACCGAAGCGAAATGAAGAGAAGGGGGGGGAGTGGCCGGTGAG
GGAGGCCATCGGCAGCATGATGTGGGTGTCGACGTTCTCGCGTCCAGACG
TCTCGTTCGCCGTGCGTGCGGTAGCACGCCACGCCCACGCCCCGGCGGAA
GCAGCACTGGGATGCCATACTGAAGATCCTCGGCTACCTGTAAGGGACGA
GGGACCTCGGCATCACCTACTTACGGGAATCTGGGTAAGGGCTGGCCTTG
TACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGTGTCAGG
GTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCACGACGC
AGAGCATCGTGACTTTGTCTTCGACGGAAACCGAGTACATCGCTGCCGGG
GAGGGCGCCAAGGAGGCGTTGTTTGTGCATGCTGGGCTTTCGTTTGTTGC
CCCAGAGACCAGTGGTAGCAGCATCCAGGTCCCTTGAGGACAACCAAGGG
GCCATAGCGTTGGTACAGAACCCTCTCAGCTCAGGTCGCACGAAACACAT
CGACGTGCGGTTTCATTTCATCCATGAATTGTTCAGGTTGAGGGATATTT
CGGTCAAGTTCGTTCCGACAACGGAACAACACGCGGACCTCCTAACCAAG
GCTCTTAGCAGGGCTGGTCTGCAGTACCACCGGCGCAAGTTGATGGATTT
GGCGGAGTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_100:164431..166740-

>EsuBft1929_2a-0001 ID=EsuBft1929_2a-0001|Name=EsuBft1929_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1914bp|location=Sequence derived from alignment at Scaffold_100:164431..166740- (Ectocarpus subulatus male Bft15b)
ATGTGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGAAGCGGCGGCAGC
GGCGGCGACAGCAGCAGCCGCGGTAGCTGCGGCAGCGACAGCGACAGCAG
CAGCGGTGGCAGCAGCGGCGATGACGGCAGCACCGACAGCAGCAGTGGCA
GCAACAGCGAGACGGATCTCCTGGCGCTCCGTGGGCCAGAGGCCCGGCGG
CTCGCCCGCTTCAACAAGCCGGCGGAACTCACCAGCCGCCGCACTTGGGA
GAACCCTCGCCGAAACCCGAGGTACGAGACGTCTCAGTCGCCGACAAGTG
CCGAAGCCCTGCTCGCCTCGGTGCCTGCTCGTCAGCAGCACGGAGGAGTC
TACCAGCTGGATGATCTCGGCGATTCTTCACGTGGCGGAGGGGCTAGATG
CGAGGGCGGCGCGAAAATTGCTGTTCGAGCGCCCGGAAGAGGCTCACGCT
GCGCGCCAAGAGGCGGAGGACTTCCTGCTGGAGTTTGAAGGGCACTTGGG
CACGGGGATGTTTTCATTAGCGCCAGAGGGGCTGCCTATGGGCTCAAAGT
GGTGTTTTTGTTGGAAGACAAACAAGGAAGGAATAATAGAAAAGTTCAAA
GTGCGTCTGGTTGCTAGGGGGGTTTCGCTAGTCCCGAACGTCGATTATTT
CCATCGGTCTTCCCCTTGTCCATCATCCGCATCCATGAAACTGATACTTG
CGGTAGCAAACGAGAAGGGCATGAACCTCAATCACTGGGATGTGAAGCAG
GCGTACACACACGCCACGCTAGACGAGGAGTTTTTTCCGAGGCTTCCCGC
TGGGTGCGGGGACAAATCGCATAAGATTGTTAAGACTGAGCGTGCGATTT
ATGGTCTGCAGCAGAGTAGTAGGCGGTGGGGGTACCACGCTGCTGATACG
CTAGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCG
CAAAATGGTAGACGAAGTTTTGGTGATGATCATCGTGATTTACGTGGATG
ACACCTTGGTGGCTGGGTCTGACGAGGGTTGCGAGGAGTTGCTTGCTTCT
CTCAANCAGCAGAGTAGTAGGCGGTGGGGGTACCACGCTGCTGATACGCT
AGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCGCA
AAATGGTAGACGAAGTTTTGGTGATGATCATCGTGATTTACGTGGATGAC
ACCTTGGTGGCTGGGTCTGACGAGGGTTGCGAGGAGTTGCTTGCTTCTCT
CAAGAAGAAGTTCCCCACCAAAAATCTGGGAGAATGCGACTGGTTTGACG
GGTGTGCCATCAAGAGAGATAACGAGGCTTGGACTCTTGAAATCTCGCAA
ACCGCGTACATCGACAGCATGGTGAAACGCTTAGATGTACAATCGACCTC
CTGCACCCCTGCTTCCCCTCGTGTCGACCTAAGACCGAAGCGAAATGAAG
AGAAGGGGGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGG
GTGTCGACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGC
ACGCCACGCCCACGCCCCGGCGGAAGCAGCACTGGGATGCCATACTGAAG
ATCCTCGGCTACCTGTAAGGGACGAGGGACCTCGGCATCACCTACTTACG
GGAATCTGGAGACCAGTGGTAGCAGCATCCAGGTCCCTTGAGGACAACCA
AGGGGCCATAGCGTTGGTACAGAACCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCATGAATTGTTCAGGTTGAGGGAT
ATTTCGGTCAAGTTCGTTCCGACAACGGAACAACACGCGGACCTCCTAAC
CAAGGCTCTTAGCAGGGCTGGTCTGCAGTACCACCGGCGCAAGTTGATGG
ATTTGGCGGAGTAG
back to top