EsuBft1855_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1855_6a-0001
Unique NameEsuBft1855_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:361093..362757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_020468-tr
ProteomeIdEsuBft1855_6
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon gypsy os:drosophila melanogaster gn:pol pe:3 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length604
Hectar predicted targeting categoryother localisation
Evalue6.82e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_6aEsuBft1855_6aEctocarpus subulatus male Bft15bgeneScaffold_100 361093..362757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_6a-0001EsuBft1855_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 361093..361377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_6a-0001-exonagat-exon-23139Ectocarpus subulatus male Bft15bexonScaffold_100 361093..361423 -
EsuBft1855_6a-0001-exonagat-exon-23140Ectocarpus subulatus male Bft15bexonScaffold_100 361799..361901 -
EsuBft1855_6a-0001-exonEsuBft1855_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 362588..362757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_6a-0001-cdsEsuBft1855_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 361093..361377 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_6a-0001-exonagat-five_prime_utr-4418Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 361378..361423 -
EsuBft1855_6a-0001-exonagat-five_prime_utr-4419Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 361799..361901 -
EsuBft1855_6a-0001-exonagat-five_prime_utr-4420Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 362588..362757 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1855_6a-0001 ID=EsuBft1855_6a-0001|Name=EsuBft1855_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=604bp|location=Sequence derived from alignment at Scaffold_100:361093..362757- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGCGGATTACCTGACACCATATACTCGGTCGGTCGGTGGAGATTTTAC
GATGGATCGACATCGGCATACGACTAGAGTTCAAGTGTTCGCGGGGTCGA
GAGCGACTAAGTTGATGTCGTGGGAGGCTCTGTTGGATACGGGAAGTCCG
GCATCGTTTGTACAAGAAAGGGGGCGTTCCGGCGGTTGTGGCAAAGGGTG
CCTCCGCACATTCGAGACGTCCATTTCGACTTCAATGCGAAACTGTGGGA
GGCAGAGGACATTGACAAACTAGGGACGGGGCAGAACACGTGCGCGACCT
GGAGAGGTTTTTCGAGCGTATGGTCAAGTTCAACCTGAAACTGGCACCCA
AGAAGACGAACCTGGGGGTGAAGGTGGTGACGTTCTTGGGGCATCAAGTC
ACGGCGGAAGGGATCGGGCCGGACCCGGAAAAGGTCAGACCGCTGCGTGA
AGTGCCAATGCCCACTAATGTTAGCCAGCTACGATCGTTGTTGGGGTCTT
TGTCGTACTATCGCAAATTCCTGAAGAACATGTCGGCTAAATTGAAACCG
ATCAATGCGATGCTGAAAAGGGAGCGAAGTTTGCGTTCACGGCTGATCAC
GTGA
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protein sequence of EsuBft1855_6a-0001

>EsuBft1855_6 ID=EsuBft1855_6|Name=EsuBft1855_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MVKFNLKLAPKKTNLGVKVVTFLGHQVTAEGIGPDPEKVRPLREVPMPTN
VSQLRSLLGSLSYYRKFLKNMSAKLKPINAMLKRERSLRSRLIT
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mRNA from alignment at Scaffold_100:361093..362757-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1855_6a-0001 ID=EsuBft1855_6a-0001|Name=EsuBft1855_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1665bp|location=Sequence derived from alignment at Scaffold_100:361093..362757- (Ectocarpus subulatus male Bft15b)
GCGGCGGATTACCTGACACCATATACTCGGTCGGTCGGTGGAGATTTTAC
GATGGATCGACATCGGCATACGACTAGAGTTCAAGTGTTCGCGGGGTCGA
GAGCGACTAAGTTGATGTCGTGGGAGGCTCTGTTGGATACGGGAAGTCCG
GCATCGTTTGTACAAGAAAGGTGTGTGCAAAAGATGTTAGAATTTGGTTC
GGCTTCAGCTGATAGCATTGAAACAGGACTGAATAAGAAATGGGGTGGGT
TCCATGGGGTGCCGTTGGTCACAGATCGAAGAATGCGATTAAATATTGAA
ATGTGGAAGGGCGGAAAATCAGCGCCGGTCCATTTCGGTACGCCGACGGT
AAGGACGAGTGGGTATGCGTACATCGTGCCAGACTCAGCTCTGGGACATG
ATCTGATACTTGGGAGGGATAGGTGGGCTGATTTTCCAGTTCGCAGATTC
CAAGACGTGTCGGACACAGAAACAATTGTCGCTTTTGTCGGTGAAAATAC
TGATAAGGTGGCAGGAANTTGAGGTAAAATTAACCAACCTTGATGGCAGT
GATGCTGCGGTGGGGACGTACCGGGTGCAGTTTGGAAAAAAGTGGTTCCC
GCAGGAAGCATTAGTCGAAAATGGCACGTCTGAAATTCCTCTAAGAAGAG
TGGGGGATAGCTCGTGTCTGGTGAAACCAAAAGATATTTTGGGGTATGGT
GGTGAACCCCTGGAGGTGGTAAATTTGGATGATGCTCGTTTGGTGGAAAA
TGAGGAATTCAAAAATGTATTTGCGGTTCAGGAGGGTGAAGAGGCTGATA
TGCCTGACGACGAACCCCCCTCTGATGTTATTTCTTCTTTGAATGGGGCG
CAACAGGGGGCGTTCCGGCGGTTGTGGCAAAGGGTGCCTCCGCACATTCG
AGACGTCCATTTCGACTTCAATGCGAAACTGTGGGAGGCAGAGGACATTG
ACAAACTAGGTGATTTATTGTGCAAGTTTGAGCATCGTTTTTCAAAGGGT
GGTTCGGATTTAGGACGGGTGACGGTGGATCCGTTTCGAATCATTTTGAA
GCCGGGGGCACAGCCATTCCGATAGTGGAGGATATATTGGCGGAAGTGGA
CAAATCAAAAATCTTCAGTACGCTGGATTTCGTCAGTGGGTTTTTCCAGC
GCGGTATTGAGGAGGACAGCATTCCGATCACTGAGGTTATCACGTCTACG
GGGTTGTACGAATTATTATCCGTCCCGCAAGGTCTCAGTAGTAGTCCTGG
GTGGTTTCATTCGGTGATGGCCAGAGTATGTGACGGACTGGAACGTGTGC
GTCTGTTTATCGATGACGTGATCGTTTTTTCCAGGGACGGGGCAGAACAC
GTGCGCGACCTGGAGAGGTTTTTCGAGCGTATGGTCAAGTTCAACCTGAA
ACTGGCACCCAAGAAGACGAACCTGGGGGTGAAGGTGGTGACGTTCTTGG
GGCATCAAGTCACGGCGGAAGGGATCGGGCCGGACCCGGAAAAGGTCAGA
CCGCTGCGTGAAGTGCCAATGCCCACTAATGTTAGCCAGCTACGATCGTT
GTTGGGGTCTTTGTCGTACTATCGCAAATTCCTGAAGAACATGTCGGCTA
AATTGAAACCGATCAATGCGATGCTGAAAAGGGAGCGAAGTTTGCGTTCA
CGGCTGATCACGTGA
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Coding sequence (CDS) from alignment at Scaffold_100:361093..362757-

>EsuBft1855_6a-0001 ID=EsuBft1855_6a-0001|Name=EsuBft1855_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_100:361093..362757- (Ectocarpus subulatus male Bft15b)
ATGGTCAAGTTCAACCTGAAACTGGCACCCAAGAAGACGAACCTGGGGGT
GAAGGTGGTGACGTTCTTGGGGCATCAAGTCACGGCGGAAGGGATCGGGC
CGGACCCGGAAAAGGTCAGACCGCTGCGTGAAGTGCCAATGCCCACTAAT
GTTAGCCAGCTACGATCGTTGTTGGGGTCTTTGTCGTACTATCGCAAATT
CCTGAAGAACATGTCGGCTAAATTGAAACCGATCAATGCGATGCTGAAAA
GGGAGCGAAGTTTGCGTTCACGGCTGATCACGTGA
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