EsuBft1855_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1855_5a-0001
Unique NameEsuBft1855_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:359412..360859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1855_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length120
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_5aEsuBft1855_5aEctocarpus subulatus male Bft15bgeneScaffold_100 359412..360859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_5a-0001-exonEsuBft1855_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 359412..360157 +
EsuBft1855_5a-0001-exonagat-exon-23138Ectocarpus subulatus male Bft15bexonScaffold_100 360400..360859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_5a-0001-cdsEsuBft1855_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 359412..359738 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_5a-0001-exonagat-three_prime_utr-6717Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 359739..360157 +
EsuBft1855_5a-0001-exonagat-three_prime_utr-6718Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 360400..360859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_5a-0001EsuBft1855_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 359412..359738 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1855_5a-0001 ID=EsuBft1855_5a-0001|Name=EsuBft1855_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1206bp|location=Sequence derived from alignment at Scaffold_100:359412..360859+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCACGGTCTCAACATCCTAGGCACATACGTCCGAACTGGCTCTTC
ACCCACCAACCTCTCAAATTGCCCTGGATTTCTATTTGGATTTTCCGCAG
GGGCTTTCAATTCTTTCCTCACCAACAAATGCTTCGAATTTGGCAACACC
AACAAAGTACCCTGGGAAACCAACCGCTTCAACTCATCCAAGTCGACATC
TACCCCTTCCGGAATATCTCCCTCCTTCACTCTCTTTGGATCAGCGTGCC
CTTCAATTGCCGTAATTGCTAATCGCGCCGTGTCGTCTTCCTCCTGTATA
TCTGCCCAATCACTAGCCGTCTCGTGACATAATTTTTTCCCAAATTCAAT
TGCCGCTTGCGTCTGTTCTTCATCATACTCTTGCAACGGAATTTGAGGCA
ACGGAGGTGCTGCCGGACCCCTGCCCCCGGAACCCCTTCCCCTACCAACA
CCGGACCCAATCGCGAAGGTAGCACCCCGCTCGCACCTATCATATAAACA
TCAAGATCAGACGGATCAGTCAGCCTGACATCTGGTGCCTCGTCCTCTTT
TGTCGCAGGCAATGGCAACCGTGACATCAAATCGGCATTTGCATTCTCTC
GCCCTGGTCGATACTTCAGTTCATACGTGTACGCTGACAGGAAGTCATAC
CACCTCTGTACGCGATTGTTTTTCTCTGCCAAACTCCCCAAATTTCGCAA
GGGTTGATGGTCACTGTACACTTCAAAGGGGATGCCATAAAATAGTTGTT
CGATTCTTCTTAATCGCCCACACTATCGCACCCGCTTCCAGCTCAGTCGG
ACTCCATCTGGTTTCATTCGGGAATGTGGATCGGCTCAAAAAGCATAGCG
GTCTAATACTCCCATCTCGTTGCTCTTGCTCAATTACGGCTCCCAAGCCC
GAAATCGACGCATCAGCGGTTAGCCGAAACGGCCGCTCTCCCGATATCGC
ACCCTCATAACACGGAAATGCCAAGACCGTAGGACCAGACAGAATATCCA
TCATCTTCCTTACCACCGCCACATGATCAGCCGTGAACGCAAACTTCTCT
CCCTTTTTCAGCATTGCATTGATCGGTTTCAATTTTGCCGACATGTTCTT
CAGGAACTTCCGATAGTACGACAAAGACCCCAACAACGATCGTAGCTGGC
TAACATTAGTGGGCATTGGCACTTCACGCAGCGGTCTGACCTTTTCCGGG
TCCGGC
back to top

protein sequence of EsuBft1855_5a-0001

>EsuBft1855_5 ID=EsuBft1855_5|Name=EsuBft1855_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=108bp
MTHGLNILGTYVRTGSSPTNLSNCPGFLFGFSAGAFNSFLTNKCFEFGNT
NKVPWETNRFNSSKSTSTPSGISPSFTLFGSACPSIAVIANRAVSSSSCI
SAQSLAVS
back to top

mRNA from alignment at Scaffold_100:359412..360859+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1855_5a-0001 ID=EsuBft1855_5a-0001|Name=EsuBft1855_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1448bp|location=Sequence derived from alignment at Scaffold_100:359412..360859+ (Ectocarpus subulatus male Bft15b)
ATGACCCACGGTCTCAACATCCTAGGCACATACGTCCGAACTGGCTCTTC
ACCCACCAACCTCTCAAATTGCCCTGGATTTCTATTTGGATTTTCCGCAG
GGGCTTTCAATTCTTTCCTCACCAACAAATGCTTCGAATTTGGCAACACC
AACAAAGTACCCTGGGAAACCAACCGCTTCAACTCATCCAAGTCGACATC
TACCCCTTCCGGAATATCTCCCTCCTTCACTCTCTTTGGATCAGCGTGCC
CTTCAATTGCCGTAATTGCTAATCGCGCCGTGTCGTCTTCCTCCTGTATA
TCTGCCCAATCACTAGCCGTCTCGTGACATAATTTTTTCCCAAATTCAAT
TGCCGCTTGCGTCTGTTCTTCATCATACTCTTGCAACGGAATTTGAGGCA
ACGGAGGTGCTGCCGGACCCCTGCCCCCGGAACCCCTTCCCCTACCAACA
CCGGACCCAATCGCGAAGGTAGCACCCCGCTCGCACCTATCATATAAACA
TCAAGATCAGACGGATCAGTCAGCCTGACATCTGGTGCCTCGTCCTCTTT
TGTCGCAGGCAATGGCAACCGTGACATCAAATCGGCATTTGCATTCTCTC
GCCCTGGTCGATACTTCAGTTCATACGTGTACGCTGACAGGAAGTCATAC
CACCTCTGTACGCGATTGTTTTTCTCTGCCAAACTCCCCAAATTTCGCAA
GGGTTGATGGTCACTGTACACTTCAAAGGGGATGCCATAAAATAGTGTTC
GATTCTTCTTAATCGCCCACACTATCGCACCCGCTTCCAGCTCAGTCGGA
CTCCATCTGGTTTCATTCGGGAATGTGGATCGGCTCAAAAAGCATAGCGG
TCTAATACTCCCATCTCGTTGCTCTTGCTCAATTACGGCTCCCAAGCCCG
AAATCGACGCATCAGCGGTTAGCCGAAACGGCCGCTCTCCCGATATCGCA
CCCTCATAACACGGANTATTGGGGATGCCACAAAATAGTGTTCGATTCTT
CTTAATCGCCCACACTATCGCACCCGCTTCCAGCTCAGTCGGACTCCATC
TGGTTTCATTCGGGAATGTGGATCGGCTCAAAAAGCATAGCGGTCTAATA
CTCCCATCTCGTTGCTCTTGCTCAATTACGGCTCCCAAGCCCGAAATCGA
CGCATCAGCGGTTAGCCGAAACGGCCGCTCTCCCGATATCGCACCCTCAT
AACACGGAAATGCCAAGACCGTAGGACCAGACAGAATATCCATCATCTTC
CTTACCACCGCCACATGATCAGCCGTGAACGCAAACTTCTCTCCCTTTTT
CAGCATTGCATTGATCGGTTTCAATTTTGCCGACATGTTCTTCAGGAACT
TCCGATAGTACGACAAAGACCCCAACAACGATCGTAGCTGGCTAACATTA
GTGGGCATTGGCACTTCACGCAGCGGTCTGACCTTTTCCGGGTCCGGC
back to top

Coding sequence (CDS) from alignment at Scaffold_100:359412..360859+

>EsuBft1855_5a-0001 ID=EsuBft1855_5a-0001|Name=EsuBft1855_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=327bp|location=Sequence derived from alignment at Scaffold_100:359412..360859+ (Ectocarpus subulatus male Bft15b)
ATGACCCACGGTCTCAACATCCTAGGCACATACGTCCGAACTGGCTCTTC
ACCCACCAACCTCTCAAATTGCCCTGGATTTCTATTTGGATTTTCCGCAG
GGGCTTTCAATTCTTTCCTCACCAACAAATGCTTCGAATTTGGCAACACC
AACAAAGTACCCTGGGAAACCAACCGCTTCAACTCATCCAAGTCGACATC
TACCCCTTCCGGAATATCTCCCTCCTTCACTCTCTTTGGATCAGCGTGCC
CTTCAATTGCCGTAATTGCTAATCGCGCCGTGTCGTCTTCCTCCTGTATA
TCTGCCCAATCACTAGCCGTCTCGTGA
back to top