EsuBft1855_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1855_2a-0001
Unique NameEsuBft1855_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:338660..340011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1855_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length87
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_2aEsuBft1855_2aEctocarpus subulatus male Bft15bgeneScaffold_100 338660..340011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_2a-0001-exonagat-exon-23127Ectocarpus subulatus male Bft15bexonScaffold_100 338660..338711 -
EsuBft1855_2a-0001-exonEsuBft1855_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 339185..340011 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_2a-0001-exonagat-three_prime_utr-6714Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 338660..338711 -
EsuBft1855_2a-0001-exonagat-three_prime_utr-6715Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 339185..339861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_2a-0001-cdsEsuBft1855_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 339862..340011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1855_2a-0001EsuBft1855_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 339862..340011 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1855_2a-0001 ID=EsuBft1855_2a-0001|Name=EsuBft1855_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=879bp|location=Sequence derived from alignment at Scaffold_100:338660..340011- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGTACTCATAGTC
GTGCATGCCGTAGTCGTTAGACCATTGAC
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protein sequence of EsuBft1855_2a-0001

>EsuBft1855_2 ID=EsuBft1855_2|Name=EsuBft1855_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MPVAKCQNLAKTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_100:338660..340011-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1855_2a-0001 ID=EsuBft1855_2a-0001|Name=EsuBft1855_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1352bp|location=Sequence derived from alignment at Scaffold_100:338660..340011- (Ectocarpus subulatus male Bft15b)
ATGCCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCTGCCTCCGCGCACAAAAA
ATGAGATGGGCATCGCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTA
CATTTTTTCGCCTGACCCCATCAGTGCCGACCCAACTACACCACCACGCG
CATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCT
TGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACA
ACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAA
AGTAGTGTTGTGATCGTTGTTTGTTTCATGCATCTACTTCGTTAGCAAGG
GAAGGGAGGGGGAGAAACTCGACCTAAAGCCGCTATATTAATAGCAGCTC
TCCCACGAAGCATGCTATTTTTGTCCCCTTGGACGGAGAACGACATGATT
TTGGCGAAATGTCCGCCGTTCAGCAAATAGAGACTGGGAGGGGGGGAGAG
GGGGGGGGGGGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATTG
AC
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Coding sequence (CDS) from alignment at Scaffold_100:338660..340011-

>EsuBft1855_2a-0001 ID=EsuBft1855_2a-0001|Name=EsuBft1855_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_100:338660..340011- (Ectocarpus subulatus male Bft15b)
ATGCCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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