EsuBft1809_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1809_6a-0001
Unique NameEsuBft1809_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:1536..6119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1809_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length240
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6aEsuBft1809_6aEctocarpus subulatus male Bft15bgeneScaffold_350 1536..6119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6a-0001EsuBft1809_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 3755..4630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6a-0001-exonagat-exon-98189Ectocarpus subulatus male Bft15bexonScaffold_350 1536..2093 -
EsuBft1809_6a-0001-exonagat-exon-98188Ectocarpus subulatus male Bft15bexonScaffold_350 3229..4966 -
EsuBft1809_6a-0001-exonEsuBft1809_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 6012..6119 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6a-0001-exonagat-three_prime_utr-6470Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 1536..2093 -
EsuBft1809_6a-0001-exonagat-three_prime_utr-6471Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 3229..3754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6a-0001-cdsEsuBft1809_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 3755..4630 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_6a-0001-exonagat-five_prime_utr-4243Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 4631..4966 -
EsuBft1809_6a-0001-exonagat-five_prime_utr-4244Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 6012..6119 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1809_6a-0001 ID=EsuBft1809_6a-0001|Name=EsuBft1809_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2404bp|location=Sequence derived from alignment at Scaffold_350:1536..6119- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGGTCGTGGACAAGCGTGTCAACGACAGAACCTTCATCTATCTCTAGG
AGCAAGCCACCGCCCACGGCTTCACTCCTTGAAACTTGGCGTCAGCTGGC
ATTACACGAGGACACCATGTCCAGCGGCAACGTGGAACTCCTGGGCGACA
ATGTGGAAATCCTCGACTACGAACCCGAGGGCGAGGCTCCCACTGCAGAG
TAGTTTCCAGCGGCGAGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGT
GTTCACCGTCGATGATTTGCTGGACAACATCGCCACAGCAGATCCGGCGG
AACTGGAGCGGACCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTA
GAGCGGCCCATCTGTCGTCCGATTCCCCCTTTTCGTTCCTCCTTTCTCGC
TCCCGCCGGAAGACAGATTAATCCGCTTGCCCCACGACGAGTTTATGGAG
TACCAACGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAACATAGC
AGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGG
CGGAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAG
CGTGAGGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGA
GGCTGCTCTGGCTGCTGCCGCGAGGAAGCAGGAGGAGAAGCGTGCGGCTG
TTCTGGCGGAGCGTGAGGCGTATCTCCAAGCGGCTCGGACGAAGCAGGGG
GCGCTCCGATCGCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGACCCGCG
AGCAGCCCCCCACCCCCTTCGCCGTGTTATCGTCCCCGTCCCCACGCAAT
CCCAGGTGCACCTTGGCTCCCATCGTACCGCCTCGCCGCACGAGAAGGAG
CGCGAGGTGGCGGCGTCTCCGACGAACGAACAGGAGCGGAAGAGGACAGC
GACTCCAGAGTTTTCGGTTACTTGGGTCTTCCGGCTGGTGCTGAAAACGG
GGCATCGTTTGCGGCGGCAACCACGGTATACGAGTTCCACGTTGGAGATA
CAGCGTTTCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTCACCTTC
CACGACGAGGATAAATTCGCAGCTCTTTTTGCATGGGCTGGCATCAAACA
ACTTGTCCGTGCACCATTCCCCCCACCGCACACATTTGCTTTCGGGCACA
TCTACCACACACCGTACCTCGCGAAACTTCCGCCTTCTTCGCGGCAGTCC
GTGTTCCAGCTGTTGTTCGCTCTCCGTCGTGCCACCTGTCATGAAGGTCC
TCAAGGAACGTCGGTGGTGACCCAGGAGGGAGGACTCTAGCTGCCTCTTG
CTCGTGCTGCTCGATCAACGACTTCAAGCACGATCAACAAGCCCCCCGGC
AGGCCTTTTCACGCCCTGCACATGGTTCTGGAGAGGACAAGGATTTCAGT
AGTTCGGCGGCTCCGGTGTCCAAAGCTGGAAGAACCGTTGGGGCGACCGG
GATTCGACGGCCAAGAGCGGGACGGACGACCACCACCGCTTCACCCAGTC
TTCGCGAGGGCGCGGCGTCGGATATAACAGGCGAGGGCGAACCGTGGGAA
ACCAGCCTACGAGGTCTTCGCCGGCGAGTCGCCATCGCCGGAGCAGGAGT
CGGAGCGCAGAGCGACAACAGCGCACCAATCCTTCGTCTAGGCGTGGGCG
CAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCTCCGTCTAGGCGTA
GCCGCAGCCGGAGCCAGAACCAGAGCGGGGGCAATAGCAGGGCGACTAGC
ACTGACAGCAGTCGCGGTGGGAAAGGGCGACGGAGGTCAGGCCACGGTAG
AAAACCATCTGCGCAAGGAACCGGCAGGGCCCTCGACGTACGCCTTCTTC
ATCCAGAAATTGGCGGCCGCCTGGGACACTCAAGACAAGAGCTCGGGGAT
TGATCGTCTTCGCAGTTTTGGCGTATCCAACGGCGAGACTTACGGAGAAT
ACATCCGTCGCTTTAAGGCTCTGGCCATGACCGTCATCGTTTCCCACCAC
GCGTTCAAGCCTTCGGATGCGCAAGTGCAGATAGCTGTTCGAGACTCCAT
GTTGAAGCAGTTTCCGGTAGTGTCTGGGCAGGTGTACAAGGATGAGCAGC
TCTCCATGGAAGCCCCTTTTGGGCGACATGCTTCGTGTCTGGATGATATG
TGGGATGTGTTGGACAAGCGTGCGTTCGCGCACACGCCGGCGGTGCATGG
AGATGATTTCTTTTCGGTATCTTCCACGAATGCTAGGAGTTCGTCTGCTG
TTTCGCGTGCTGTAGCTTCTTCGGCGTTGCGTTCGACGGTGACCCCTTCG
TGGAGCCAAGGTTCTTCGGCCGCCGTGATGAGTGTTGACCCTCTACCTAA
TCAT
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protein sequence of EsuBft1809_6a-0001

>EsuBft1809_6 ID=EsuBft1809_6|Name=EsuBft1809_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=291bp
MEYQRLNEMWCDGLAGNIAEAEAREQAKREDAERLAEREAALAAAARKQE
EEREAVRAAAARKQEEEREAALAAAARKQEEKRAAVLAEREAYLQAARTK
QGALRSRLKELEPRHQDPRAAPHPLRRVIVPVPTQSQVHLGSHRTASPHE
KEREVAASPTNEQERKRTATPEFSVTWVFRLVLKTGHRLRRQPRYTSSTL
EIQRFCPARWRCLQKVSPSTTRINSQLFLHGLASNNLSVHHSPHRTHLLS
GTSTTHRTSRNFRLLRGSPCSSCCSLSVVPPVMKVLKERRW
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mRNA from alignment at Scaffold_350:1536..6119-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1809_6a-0001 ID=EsuBft1809_6a-0001|Name=EsuBft1809_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4584bp|location=Sequence derived from alignment at Scaffold_350:1536..6119- (Ectocarpus subulatus male Bft15b)
CGTGGTCGTGGACAAGCGTGTCAACGACAGAACCTTCATCTATCTCTAGG
AGCAAGCCACCGCCCACGGCTTCACTCCTTGAAACTTGGCGTCAGCTGGC
ATTACACGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGTGTTG
TTGCCACGCTTTTTTCACCACCACCGGGTTGCTTGTTATTTGGCCTCACC
ACCCACGAGAATCTAGACTAAGCCTCTTCTCTGCTTCCTCTCCTGTAGAG
ATGCTGGCTTGTGATGCTTTTGCGAAGCGCCCGCGGGACTGGGACCTTGC
AAAGGATACGCGCCTCGGAGGCCATCGCGATGTTTTGGGTGATTTCTCGT
ACGTTCGCCGTCCCTCGAAAGCTATTTTGTCTGCATCGGCGGTCCATGAA
GTGATTTCTGTGGCGGATACCCTCTGCATGGAGCGTCCTGAGTTGCTGGC
CTTGTGTAGTTGGACCCGAGATGACAGCATGCTTCCCACGTCTGCTGCCA
CCTCTACTGCATTATGCCGGCGTACCGGCCGATGTCCGCGAATTTTCCTG
TTGTGCTGTCCGATTTGACTCCGCTTGCATCGACTTGGAACGCGATGTGT
GCACACAAATTGGGTGTCAGCCGCCCCACCAGCCTTCCCTCCATTTTCCG
AAATCACATGGCACTTTTTTTCGGGGAATCGTTCACCCTCAAAGCATTTG
AATTGGAAAGCTTTCAACAGCGCAAACCCACAGCGGTCTTTGCTCGCACT
TCAGCACCAGCTGCGGAGGAACGCCGTGCTGCTCTGCGTGCTTTTGGTCG
GCAAATGTCGTGTCTCCATGCAACACGGGCCCTCTTGTGCTAGTTTTCTA
CTGCTGTTTGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTTCTGCTTGG
TTGGATCCGCTTCAACCTCGTGTGCACCAAGCTTGTATCACTGGGCGTAT
GCTATCTTGTGGATATCTCCGCCTTTCGCTTGGACCTTGGCTTGCTCTTC
CCGAAATTGCACCCGGCTTCACTACTTCTGCTGCTCTTGGTACTGCTGCC
TCAACTGCGGTTGGTTATCCTACATCTACTGTTTCTGGCCCTGCTGCCCT
TTCCAAAATCGATCGTAGCTACCCTCTCTCTGGCCCTGTTCTTGTTAACA
AAGAGGACACCATGTCCAGCGGCAACGTGGAACTCCTGGGCGACAATGTG
GAAATCCTCGACTACGAACCCGAGGGCGAGGCTCCCACTGCAGAGTAGTT
TCCAGCGGCGAGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGTGTTCA
CCGTCGATGATTTGCTGGACAACATCGCCACAGCAGATCCGGCGGAACTG
GAGCGGACCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTAGAGCG
GCCCATCTGTCGTCCGATTCCCCCTTTTCGTTCCTCCTTTCTCGCTCCCG
CCGGAAGACAGATTAATCCGCTTGCCCCACGACGAGTTTATGGAGTACCA
ACGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAACATAGCAGAGG
CGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAA
CGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGA
GGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTG
CTCTGGCTGCTGCCGCGAGGAAGCAGGAGGAGAAGCGTGCGGCTGTTCTG
GCGGAGCGTGAGGCGTATCTCCAAGCGGCTCGGACGAAGCAGGGGGCGCT
CCGATCGCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGACCCGCGAGCAG
CCCCCCACCCCCTTCGCCGTGTTATCGTCCCCGTCCCCACGCAATCCCAG
GTGCACCTTGGCTCCCATCGTACCGCCTCGCCGCACGAGAAGGAGCGCGA
GGTGGCGGCGTCTCCGACGAACGAACAGGAGCGGAAGAGGACAGCGACTC
CAGAGTTTTCGGTTACTTGGGTCTTCCGGCTGGTGCTGAAAACGGGGCAT
CGTTTGCGGCGGCAACCACGGTATACGAGTTCCACGTTGGAGATACAGCG
TTTCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTCACCTTCCACGA
CGAGGATAAATTCGCAGCTCTTTTTGCATGGGCTGGCATCAAACAACTTG
TCCGTGCACCATTCCCCCCACCGCACACATTTGCTTTCGGGCACATCTAC
CACACACCGTACCTCGCGAAACTTCCGCCTTCTTCGCGGCAGTCCGTGTT
CCAGCTGTTGTTCGCTCTCCGTCGTGCCACCTGTCATGAAGGTCCTCAAG
GAACGTCGGTGGTGACCCAGGAGGGAGGACTCTAGCTGCCTCTTGCTCGT
GCTGCTCGATCAACGACTTCAAGCACGATCAACAAGCCCCCCGGCAGGCC
TTTTCACGCCCTGCACATGGTTCTGGAGAGGACAAGGATTTCAGTAGTTC
GGCGGCTCCGGTGTCCAAAGCTGGAAGAACCGTTGGGGCGACCGGGATTC
GACGGCCAAGAGCGGGACGGACGACCACCACCGCTTCACCCAGTCTTCGC
GAGGGCGCGGCGTCGGATATAACAGGCGAGGGCGAACCGTGGGAAACCAG
CCTACGAGGTCTTCGCCGGCGAGTCGCCATCGCCGGAGCAGGAGTCGGAG
CGCAGAGCGACAACAGCGCACCAATCCTTCGTCTAGGCGTGGGCGCAGCC
GGAGCGGAGACCGTCGTGGGAGAAACACGCCTCCGTCTAGGCGTAGCCGC
AGCCGGAGCCAGAACCAGAGCGGGGGCAATAGCAGGGCGACTAGCACTGA
CAGCAGTCGCGGTGGGAAAGGGCGACGGAGGTCAGGCCACGGTAACAGGC
AAGTGATGTATGATCGAGGTGATTTTCGTAGCTCTGGGTTGTTGGGGGAA
AGCAAGGATGCTTCAGAAGACGGTTCTCTCTGTTCTTCACCGCTTGCTCT
ACGCCCTCCCGCTGATGTAGGCCAACCGACCAGGTCTTCTTTGGCTTTCA
AACTTGCCAACATGCAACTTCGTGAACGTTCAGCCGCTGTGAAAAGCCAT
GCCCCTGCCCATGCCGTTATGGATCATCCCACATCTTCCTTGCCTTTGGA
CGAACCTGTTGAGTCACCACGCCATGCTGCATCACACGCCTCGACTTCGG
CCTCCCGTACTGAAATGCTGTTGGAACAAGTATTCACTCTCCTGCGAGCA
AATCAAGTAGTGGATGCTGCTGCCGACGCGAATGTACAACCTCCTGTGCC
CCCCCACGCTCCTAGCGTGCCACCACCTGCCCCATCTTCTTCCCCACCAA
CGCGTCCGACACCGATGCAAGACCACGCTTCGAGCTTTTCGGGAGCTCCT
GTGGGACGCGATGTTCGTGCCGAAACCGCTGCCAGGACCACGCCAGGATC
ATCGTCATCAGCCACGAGGTCGGCGACAGTACCGGTCGAGCCTGCGGTGG
CACAGTCAGCGTCGACAGCTCCAGCCCTGTAGCAACAGCCTTTGGTGGTA
TCGCCCCCCCCGCTCCAGCGTGCGTCTGTGTTGATTGATCCTGACTCTGC
AACCGGCCACATCGTCGAGCCACCGAGTCAAGCGGCATCACCGGTGCCAT
AGGACGATGCTAGGTTGCCTTTGTCTTCCTCGGGAGGCAGGAGGCTCTGC
ACGCTGCGGACGCCGCTGCAGCGGAGGCCGACACCATCCGCGTTCAAGAC
AAGATGGACAAGCTGAAGCCGGAACAACTTGGTAGTGTCACACGCTTGCC
CCTCGGTCCTGATCCTGAGGAATTTGCTCGCTTCGCGTCTAGCTGCAAGG
GTGTAGTCACAGAGATCCTCAACAAAAGCGACGTCAAGCGCAAGCAGACT
TTCAATTCCTCCACCTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACG
TGTCCGTGCTGCTGTCGTTGAAGGCCAAACCACCAATCGTGCCACTCTGG
ATTTTCTTGATGCCACCTTCCTACAGGTAGAAAACCATCTGCGCAAGGAA
CCGGCAGGGCCCTCGACGTACGCCTTCTTCATCCAGAAATTGGCGGCCGC
CTGGGACACTCAAGACAAGAGCTCGGGGATTGATCGTCTTCGCAGTTTTG
GCGTATCCAACGGCGAGACTTACGGAGAATACATCCGTCGCTTTAAGGCT
CTGGCCATGACCGTCATCGTTTCCCACCACGCGTTCAAGCCTTCGGATGC
GCAAGTGCAGATAGCTGTTCGAGACTCCATGTTGAAGCAGTTTCCGGTAG
TGTCTGGGCAGGTGTACAAGGATGAGCAGCTCTCCATGGAAGCCCCTTTT
GGGCGACATGCTTCGTGTCTGGATGATATGTGGGATGTGTTGGACAAGCG
TGCGTTCGCGCACACGCCGGCGGTGCATGGAGATGATTTCTTTTCGGTAT
CTTCCACGAATGCTAGGAGTTCGTCTGCTGTTTCGCGTGCTGTAGCTTCT
TCGGCGTTGCGTTCGACGGTGACCCCTTCGTGGAGCCAAGGTTCTTCGGC
CGCCGTGATGAGTGTTGACCCTCTACCTAATCAT
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Coding sequence (CDS) from alignment at Scaffold_350:1536..6119-

>EsuBft1809_6a-0001 ID=EsuBft1809_6a-0001|Name=EsuBft1809_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=876bp|location=Sequence derived from alignment at Scaffold_350:1536..6119- (Ectocarpus subulatus male Bft15b)
ATGGAGTACCAACGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAA
CATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGC
GCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAG
GAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGA
GCGTGAGGCTGCTCTGGCTGCTGCCGCGAGGAAGCAGGAGGAGAAGCGTG
CGGCTGTTCTGGCGGAGCGTGAGGCGTATCTCCAAGCGGCTCGGACGAAG
CAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGA
CCCGCGAGCAGCCCCCCACCCCCTTCGCCGTGTTATCGTCCCCGTCCCCA
CGCAATCCCAGGTGCACCTTGGCTCCCATCGTACCGCCTCGCCGCACGAG
AAGGAGCGCGAGGTGGCGGCGTCTCCGACGAACGAACAGGAGCGGAAGAG
GACAGCGACTCCAGAGTTTTCGGTTACTTGGGTCTTCCGGCTGGTGCTGA
AAACGGGGCATCGTTTGCGGCGGCAACCACGGTATACGAGTTCCACGTTG
GAGATACAGCGTTTCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTC
ACCTTCCACGACGAGGATAAATTCGCAGCTCTTTTTGCATGGGCTGGCAT
CAAACAACTTGTCCGTGCACCATTCCCCCCACCGCACACATTTGCTTTCG
GGCACATCTACCACACACCGTACCTCGCGAAACTTCCGCCTTCTTCGCGG
CAGTCCGTGTTCCAGCTGTTGTTCGCTCTCCGTCGTGCCACCTGTCATGA
AGGTCCTCAAGGAACGTCGGTGGTGA
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