EsuBft1804_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1804_4a-0001
Unique Name	EsuBft1804_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:286237..291004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G1R3
ProteomeId	EsuBft1804_4
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR12210
Protein domains	IPR023214
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	IPR004274
Owner	apollo_admin@sb-roscoff.fr
Note	ctd small phosphatase-like protein 2 os:homo sapiens gn:ctdspl2 pe:1 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1320
Hectar predicted targeting category	other localisation
Evalue	1.85e-35
EggNOG OGs	COG5190@1\|root,KOG1605@2759\|Eukaryota
Ec32 ortholog description	putative nuclear LIM interactor-interacting protein, C terminal part
Ec32 ortholog	Ec-17_000290.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	CTDSPL2
KEGG ko	ko:K17616
GOs	GO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030510,GO:0030514,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051171,GO:0051222,GO:0051223,GO:0051252,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090316,GO:0140096,GO:1901564,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001141
Description	phosphoprotein phosphatase activity
COG category	K
BRITE	ko00000,ko01000,ko01009

Cross References

External references for this mRNA


Database	Accession
GO	0004721
GO	0031227
GO	0052745
EC	3.1.3
EC	3.1.3.18

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_4a	EsuBft1804_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 286237..291004 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_4a-0001-exon	agat-exon-100880	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 286237..287334 +
EsuBft1804_4a-0001-exon	EsuBft1804_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 290444..290607 +
EsuBft1804_4a-0001-exon	agat-exon-100881	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 290947..291004 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_4a-0001-cds	EsuBft1804_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 286237..287334 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_4a-0001	EsuBft1804_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 286237..291004 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:286237..291004+
coding sequence from alignment at Scaffold_100:286237..291004+

spliced messenger RNA

>EsuBft1804_4a-0001 ID=EsuBft1804_4a-0001|Name=EsuBft1804_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1320bp|location=Sequence derived from alignment at Scaffold_100:286237..291004+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGATTCCCGGACCAGGCGATAGCAGCTGCTGTGCCGGTCATATC
GGCAGCCATGGTGTGCAGGTGGACGCTGCGGAGCCAACTGCCGTCCACTC
CTTCTTTTTCCAACAGCAGACGAAACAATCCCAACAGGAGCGCCGCTGCT
TCCACGATGCTTCTGCCGTTGCTGATGGCCTGGGCGTACGTTCTCGCGCT
TGGAGAGAAGCTCCAGTTGGAGTTGGAGAGCTTGTACAGCGGGAGTAAGG
GCACCGCCAGTCCTACCACGGCACCAAAGCCCCCATCGCCATCGCTATTG
CCATCGGAGCTAGGAAAGGGTGCCCCAGCTTCCACAGCACCAATTGTTCC
CCTCCCTGCTGCAGATAAATCCGCCGCCGCGGCGGTTGCAACAACACGTA
CTTGCACTTCATGCTGGGGTCGGAAACTGCTGCCATCCAGCAGGAGCAGC
ACGACCGAGCATAACGAACGACTGCTGCCTCCTGCGTGTCCAACAAGCCG
GGCGCGGGCGACCGACAAGACTCTGGTGTTGGATCTCGACGAGACGCTAA
TCCTCGCCAGGGGAGACGCCAGGGAAATGGGAGAGGAGCAGAGGTTCGAC
TTCATGCTGAGCTTCCAACACCAACTACCACCACCGCAAGAAGAGAGGAG
GAGGAGCCGAGGGCTGGTACCACGCATGAGGAGGGCCGCGGCACGAGCAA
GCGGAGACTTGGGCAACGAGGGGCAGACACCCCGACGCGTCTACGTACGG
AAGCGGCCGCACTTGCGCGAGTTTCTGGAGGCCGTTTCCGAGATGTTCGA
GGTGGTGCTCTTCACGGCCGCGCCGCAAGCGTTCGCGACGGCCGTGCTTG
AGCAGATAGATCCTGAGGGGTCTTTCGTGGATCATGTCTTGTCGAGCGAC
AACTGCACGCGCTTAGGCAGCAGTACCATTAGAGGTGCAAGTGGCGGTAG
TGGAAGGAGCAGGGGTAGCAGCAGCAGCAGTTGCAGGACTTGGGGTGGGA
GAGACGGGGGCGTTTCTAGCGACCTGTCGAGGAAGAGGCGAGAAGGCCCC
ACGTCGATGGTGAAGGATCTCGGTATCATCGGGCGGCCGCTGTCCAAGGT
CATTATGGTGGACAATTCTCTGGACGCTATTCGATACCATCTGGAGAACG
GCGTGCACATCTCCAGCTTCTACGGAGATCGCGAGGACACGGACCTTCTG
TCCACGCTCGATGCGCTCAAGACGCTGGCGCCCGCGGCGGACGTCAGAGA
TGCTATTATCAGACCTGGGTCACACTCGATCTGCTTTGCAGTACCCTCCG
TGCTTCGCCCTGCGGCCTAA

protein sequence of EsuBft1804_4a-0001

>EsuBft1804_4 ID=EsuBft1804_4|Name=EsuBft1804_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=439bp
MSRFPDQAIAAAVPVISAAMVCRWTLRSQLPSTPSFSNSRRNNPNRSAAA
STMLLPLLMAWAYVLALGEKLQLELESLYSGSKGTASPTTAPKPPSPSLL
PSELGKGAPASTAPIVPLPAADKSAAAAVATTRTCTSCWGRKLLPSSRSS
TTEHNERLLPPACPTSRARATDKTLVLDLDETLILARGDAREMGEEQRFD
FMLSFQHQLPPPQEERRRSRGLVPRMRRAAARASGDLGNEGQTPRRVYVR
KRPHLREFLEAVSEMFEVVLFTAAPQAFATAVLEQIDPEGSFVDHVLSSD
NCTRLGSSTIRGASGGSGRSRGSSSSSCRTWGGRDGGVSSDLSRKRREGP
TSMVKDLGIIGRPLSKVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLL
STLDALKTLAPAADVRDAIIRPGSHSICFAVPSVLRPAA

mRNA from alignment at Scaffold_100:286237..291004+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1804_4a-0001 ID=EsuBft1804_4a-0001|Name=EsuBft1804_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4768bp|location=Sequence derived from alignment at Scaffold_100:286237..291004+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGATTCCCGGACCAGGCGATAGCAGCTGCTGTGCCGGTCATATC
GGCAGCCATGGTGTGCAGGTGGACGCTGCGGAGCCAACTGCCGTCCACTC
CTTCTTTTTCCAACAGCAGACGAAACAATCCCAACAGGAGCGCCGCTGCT
TCCACGATGCTTCTGCCGTTGCTGATGGCCTGGGCGTACGTTCTCGCGCT
TGGAGAGAAGCTCCAGTTGGAGTTGGAGAGCTTGTACAGCGGGAGTAAGG
GCACCGCCAGTCCTACCACGGCACCAAAGCCCCCATCGCCATCGCTATTG
CCATCGGAGCTAGGAAAGGGTGCCCCAGCTTCCACAGCACCAATTGTTCC
CCTCCCTGCTGCAGATAAATCCGCCGCCGCGGCGGTTGCAACAACACGTA
CTTGCACTTCATGCTGGGGTCGGAAACTGCTGCCATCCAGCAGGAGCAGC
ACGACCGAGCATAACGAACGACTGCTGCCTCCTGCGTGTCCAACAAGCCG
GGCGCGGGCGACCGACAAGACTCTGGTGTTGGATCTCGACGAGACGCTAA
TCCTCGCCAGGGGAGACGCCAGGGAAATGGGAGAGGAGCAGAGGTTCGAC
TTCATGCTGAGCTTCCAACACCAACTACCACCACCGCAAGAAGAGAGGAG
GAGGAGCCGAGGGCTGGTACCACGCATGAGGAGGGCCGCGGCACGAGCAA
GCGGAGACTTGGGCAACGAGGGGCAGACACCCCGACGCGTCTACGTACGG
AAGCGGCCGCACTTGCGCGAGTTTCTGGAGGCCGTTTCCGAGATGTTCGA
GGTGGTGCTCTTCACGGCCGCGCCGCAAGCGTTCGCGACGGCCGTGCTTG
AGCAGATAGATCCTGAGGGGTCTTTCGTGGATCATGTCTTGTCGAGCGAC
AACTGCACGCGCTTAGGCAGCAGTACCATTAGAGGTGCAAGTGGCGGTAG
TGGAAGGAGCAGGGGTAGCAGCAGCAGCAGTTGCAGGACTTGGGGTGGGA
GAGACGGGGGCGTTTCTAGCGACCTGTCGAGGAAGAGGCGAGAAGGCCCC
ACGTCGATGGTGAAGGATCTCGGTATCATCGGGCGGCCGCTGTCCAAGGT
GAGATATATCTACACATCTACATACCAGTATGTAGAAAGCACGCATGCAC
GTGGACGGGTGAAAAAGACACGTGTCATGCAGCATCTTCTAGTGTAACGC
GGGTATCCATTATTCTCGGTGGGATAAAATACTGCTACAGCAGTAGTCTA
CGGCGTCGGACGATCTCATCCCACGGGAGCTTTGATTTGTTTAGGTTTTA
GTGTAGATTGCTTTTCGGGTATCCCTTCTGCATGTACATCAACTACTATT
GGTCCACATAGGGCCATTGTGCACGTCGAGTGTTCGGGATTGCCAACCTA
AATAAATTGTTCGGGATAGCCAACCAAGATAGTGATACTTTTATAATGTG
GACTCGTCGTGGCAACGTATTTATATATATATTATATCACGATTCGTCTA
ATGAGTCCTACATCTTGATTAATGAATGCATTCGCTGCATACGGGGTTAG
AATTTTTTTTTTTTCGTATATTTTTTGACCTCTCTCGCCCAATACTCCAT
TTCACGACTTGAAACCACGCAAGTGCGTTCATCACGTGCAGTTTATAAAC
CCAATACTCCATTTCACGACTTGAAACCACGCAAGTGCGTTCATCACGTG
CAGTTTATGAGACCTACGAATGGAATGACGCCTTGCTCATTATGACACCG
ACATTGACACCTTCGCAAAAGTAGACCTCAGCCGCTGTGTGCTTCCCAAC
ATCCACGTACACGTTCTGCATGCATCGACGCGCATGGACGTGACATTACA
CAACACAAACATCGCCACCCTTTATGCATTCATCAAACGTCGTCACAACA
TGACAAGTAGTTACGATTGGCCATGCTCACTGCAGATTTACAGCATTCAG
ATGCCCCATGCTCGCTGCCGCATACGGGCAAATATACCGATTTTCTGCAG
ACAACCTCGCTCGCCAATCAAATTTTCGCCGCATATTATGTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACTTTCCAATGATC
TTTTCATTAATTGATGAGGATTACACATTCATCGCCACTCATATGTCACT
GCGTTTCAATTGCAGTCGTGACCAAAGCCGCGGGATGTATCATCATTGAC
ACATCCTCCTTTAATAGACATAACCTGCATCCTCCTTTCTATTTCCCGCG
CTTCACATCCACAAATCATTCATTGGCCTTCTTCGTGCGTATATCCGGGT
GGCCGTTCCGCCGCCTACGGCGGGCGGCCACCTTACCCTAGTGCATACGA
TTCAGCATGGGTTACTCCAGAAGTAAGCACTTGTAGCAGTTGCCGCATCA
AGCATCAAAACACGTTTCCTGTGAGAGTGCCATTGCTGTCGATCTTTCCG
GACAAAGTCTTCGGCTGAACGCGAAGCCTTTGTGTGCAACTCCGGTTCAG
ATCCGGCCTATTAAACGATGAAACACCGGCAAGGTTAAGATGGTTGTGGA
GCTTTGCGACCGAAGTTTTTTCCTTGAATCGCAGACTCGCTACGCCTACG
CTTGATTGCCGGGAATCCTGCAACTCGTTGTGCACGCACAGCATAGTAAT
ATATGTCATCCCGAGGCGTCGCTCAGCCTTTGCTAACTGCCCGACCTTCC
ATGTCTTGTCGAAGGGCTCCCATGTAGAGTCGCACTTGCAAAACTTGTCT
GTACATCGCTATTTTTCAACACGAGAAGTGCATACATACGCGGTTCGATT
CGATCAGGTCATTATGGTGGACAATTCTCTGGACGCTATTCGATACCATC
TGGAGAACGGCGTGCACATCTCCAGCTTCTACGGAGATCGCGAGGACACG
GACCTTCTGTCCACGCTCGATGCGCTCAAGACGCTGGCGCCCGCGGCGGA
CGTCAGAGATGCTATTATCAGGTATGATTGTCATCCACGAGTTCGTTGAG
CCGTTTCCATCTGTTTTTTCCTGCGATGCCAATATGGTTCTCCTTTGCTC
AAGACGGCAACCCACGTCGCCCCGGTGGTTGCGTTTTTTCCGCCGCAAAG
AGATAACCAACTACTGCACTGAGGCTGTGTTGTTATTTAACCCATTCTGC
CATCGCCCGCTCCTCGACCCCTGTATGTAGCCAATAAATCCGTGTGCCGC
CTCCTCTTGTAAACGTGAAACCCACTCGAGGCCACACGAGACCTCCCTTT
CGTTATTTGTACGTTGGATAGTCCCTGGTTGACGTGGTGCTCTGTGTTGA
CGAAATGTAGACCTGGGTCACACTCGATCTGCTTTGCAGTACCCTCCGTG
CTTCGCCCTGCGGCCTAA

Coding sequence (CDS) from alignment at Scaffold_100:286237..291004+

>EsuBft1804_4a-0001 ID=EsuBft1804_4a-0001|Name=EsuBft1804_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1320bp|location=Sequence derived from alignment at Scaffold_100:286237..291004+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGATTCCCGGACCAGGCGATAGCAGCTGCTGTGCCGGTCATATC
GGCAGCCATGGTGTGCAGGTGGACGCTGCGGAGCCAACTGCCGTCCACTC
CTTCTTTTTCCAACAGCAGACGAAACAATCCCAACAGGAGCGCCGCTGCT
TCCACGATGCTTCTGCCGTTGCTGATGGCCTGGGCGTACGTTCTCGCGCT
TGGAGAGAAGCTCCAGTTGGAGTTGGAGAGCTTGTACAGCGGGAGTAAGG
GCACCGCCAGTCCTACCACGGCACCAAAGCCCCCATCGCCATCGCTATTG
CCATCGGAGCTAGGAAAGGGTGCCCCAGCTTCCACAGCACCAATTGTTCC
CCTCCCTGCTGCAGATAAATCCGCCGCCGCGGCGGTTGCAACAACACGTA
CTTGCACTTCATGCTGGGGTCGGAAACTGCTGCCATCCAGCAGGAGCAGC
ACGACCGAGCATAACGAACGACTGCTGCCTCCTGCGTGTCCAACAAGCCG
GGCGCGGGCGACCGACAAGACTCTGGTGTTGGATCTCGACGAGACGCTAA
TCCTCGCCAGGGGAGACGCCAGGGAAATGGGAGAGGAGCAGAGGTTCGAC
TTCATGCTGAGCTTCCAACACCAACTACCACCACCGCAAGAAGAGAGGAG
GAGGAGCCGAGGGCTGGTACCACGCATGAGGAGGGCCGCGGCACGAGCAA
GCGGAGACTTGGGCAACGAGGGGCAGACACCCCGACGCGTCTACGTACGG
AAGCGGCCGCACTTGCGCGAGTTTCTGGAGGCCGTTTCCGAGATGTTCGA
GGTGGTGCTCTTCACGGCCGCGCCGCAAGCGTTCGCGACGGCCGTGCTTG
AGCAGATAGATCCTGAGGGGTCTTTCGTGGATCATGTCTTGTCGAGCGAC
AACTGCACGCGCTTAGGCAGCAGTACCATTAGAGGTGCAAGTGGCGGTAG
TGGAAGGAGCAGGGGTAGCAGCAGCAGCAGTTGCAGGACTTGGGGTGGGA
GAGACGGGGGCGTTTCTAGCGACCTGTCGAGGAAGAGGCGAGAAGGCCCC
ACGTCGATGGTGAAGGATCTCGGTATCATCGGGCGGCCGCTGTCCAAGGT
CATTATGGTGGACAATTCTCTGGACGCTATTCGATACCATCTGGAGAACG
GCGTGCACATCTCCAGCTTCTACGGAGATCGCGAGGACACGGACCTTCTG
TCCACGCTCGATGCGCTCAAGACGCTGGCGCCCGCGGCGGACGTCAGAGA
TGCTATTATCAGACCTGGGTCACACTCGATCTGCTTTGCAGTACCCTCCG
TGCTTCGCCCTGCGGCCTAA