EsuBft1804_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1804_3a-0001
Unique Name	EsuBft1804_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:294404..294979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft1804_3
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	57
Hectar predicted targeting category	other localisation
Evalue	1.2e-16
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_3a	EsuBft1804_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 294404..294979 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_3a-0001-exon	EsuBft1804_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 294404..294979 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_3a-0001-cds	EsuBft1804_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 294404..294979 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1804_3a-0001	EsuBft1804_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 294404..294979 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:294404..294979+
coding sequence from alignment at Scaffold_100:294404..294979+

spliced messenger RNA

>EsuBft1804_3a-0001 ID=EsuBft1804_3a-0001|Name=EsuBft1804_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_100:294404..294979+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCGGGCAATACCCCAACAACATCCTCCCGGAGGAACAGTGCAG
ATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCAGCC
TCCAGGAGATAGGGCGGAGAAGGAAAAGACCGCTCTACATGTGCTTCGTC
GACTTGAAGAAGGCGTATGATTCGGTGGAACGAGAGATGCTGTTGAAGGT
CCTGGCCAGGGCCGGGATCCCCGCGAACTTGATCGAAGTCATCCGCCGAT
TTCCACCATGGAATGCGGGCCCGGGTGGGCATGGACGACCGAGAAGCATC
GGACTGCTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGCTATTCCCC
CTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCG
ATTCACCGAGGATGATGTTGCTCTGCGGAGCCTGGTATGCTTGGAGGAGG
GGAAGACGGAAGCGGTGGGGGGGGAGGAGACACCCCTTGACCGAGTACGG
AGGGCAGTATGGGGGATGTTGTATGCCAATGATGACGGCGTCGAATCTAG
GTCTGGAGAAGGGCTGGCGAGAATGA

protein sequence of EsuBft1804_3a-0001

>EsuBft1804_3 ID=EsuBft1804_3|Name=EsuBft1804_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MAAGQYPNNILPEEQCRFRPGRSTVDMLFVVRSLQEIGRRRKRPLYMCFV
DLKKAYDSVEREMLLKVLARAGIPANLIEVIRRFPPWNAGPGGHGRPRSI
GLLLRDTGRATRMCYSPCCSTSSSPRSSRSLSSDSPRMMLLCGAWYAWRR
GRRKRWGGRRHPLTEYGGQYGGCCMPMMTASNLGLEKGWRE

mRNA from alignment at Scaffold_100:294404..294979+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1804_3a-0001 ID=EsuBft1804_3a-0001|Name=EsuBft1804_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_100:294404..294979+ (Ectocarpus subulatus male Bft15b)
ATGGCAGCCGGGCAATACCCCAACAACATCCTCCCGGAGGAACAGTGCAG
ATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCAGCC
TCCAGGAGATAGGGCGGAGAAGGAAAAGACCGCTCTACATGTGCTTCGTC
GACTTGAAGAAGGCGTATGATTCGGTGGAACGAGAGATGCTGTTGAAGGT
CCTGGCCAGGGCCGGGATCCCCGCGAACTTGATCGAAGTCATCCGCCGAT
TTCCACCATGGAATGCGGGCCCGGGTGGGCATGGACGACCGAGAAGCATC
GGACTGCTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGCTATTCCCC
CTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCG
ATTCACCGAGGATGATGTTGCTCTGCGGAGCCTGGTATGCTTGGAGGAGG
GGAAGACGGAAGCGGTGGGGGGGGAGGAGACACCCCTTGACCGAGTACGG
AGGGCAGTATGGGGGATGTTGTATGCCAATGATGACGGCGTCGAATCTAG
GTCTGGAGAAGGGCTGGCGAGAATGA

Coding sequence (CDS) from alignment at Scaffold_100:294404..294979+

>EsuBft1804_3a-0001 ID=EsuBft1804_3a-0001|Name=EsuBft1804_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_100:294404..294979+ (Ectocarpus subulatus male Bft15b)
ATGGCAGCCGGGCAATACCCCAACAACATCCTCCCGGAGGAACAGTGCAG
ATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCAGCC
TCCAGGAGATAGGGCGGAGAAGGAAAAGACCGCTCTACATGTGCTTCGTC
GACTTGAAGAAGGCGTATGATTCGGTGGAACGAGAGATGCTGTTGAAGGT
CCTGGCCAGGGCCGGGATCCCCGCGAACTTGATCGAAGTCATCCGCCGAT
TTCCACCATGGAATGCGGGCCCGGGTGGGCATGGACGACCGAGAAGCATC
GGACTGCTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGCTATTCCCC
CTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCG
ATTCACCGAGGATGATGTTGCTCTGCGGAGCCTGGTATGCTTGGAGGAGG
GGAAGACGGAAGCGGTGGGGGGGGAGGAGACACCCCTTGACCGAGTACGG
AGGGCAGTATGGGGGATGTTGTATGCCAATGATGACGGCGTCGAATCTAG
GTCTGGAGAAGGGCTGGCGAGAATGA