EsuBft1799_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_7a-0001
Unique NameEsuBft1799_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:106921..108853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1799_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length162
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7aEsuBft1799_7aEctocarpus subulatus male Bft15bgeneScaffold_550 106921..108853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7a-0001EsuBft1799_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 106954..107535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7a-0001-exonagat-exon-84933Ectocarpus subulatus male Bft15bexonScaffold_550 106921..107037 +
EsuBft1799_7a-0001-exonagat-exon-84932Ectocarpus subulatus male Bft15bexonScaffold_550 107145..107313 +
EsuBft1799_7a-0001-exonEsuBft1799_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 107516..108853 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7a-0001-exonagat-five_prime_utr-4208Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 106921..106953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7a-0001-cdsEsuBft1799_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 106954..107037 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_7a-0001-exonagat-three_prime_utr-6422Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 107536..108853 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_7a-0001 ID=EsuBft1799_7a-0001|Name=EsuBft1799_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_550:106921..108853+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCAAACCGCTTCCCGAGGCAACTCCACTACCATGGCTGAGCGCCGGAA
GCGCCAGCATCCCCAGGGGCCCGCAGCGCAACGTCGGGAGAAACGCCGTC
GAGGAGCTATCGACGAGGAACGGGAGCCCATCTACGAGCCCAAGCGGCTT
CCGTGGGCCCAACACGACGAGGCGGACCTCGATAAACGGCAAGGCTGGCG
GCGGTCGTACTGCATGGAGAAGTCCAGCTTCCGCAAGCTTGTCGAGCTAC
TCCGCCCTTCGCTGGCAGTCAACGCCTTCTTCGGCGCACTTATTCTACAG
CAGTAGGGACAGCAGTGTCTGCATATGCATACAGCAGGAGTCGTTGTATG
GGAACGACAGGAAGATACTACTATGGTGGCGCTGAAATAAGTTCAGCAGT
ATAAATAGAGCGTGCAACACGCCGGCACCACTACACGTTATACATGCCTC
GTCGGGAGCCAACACAGGTTGTCGTATCCCTCAATGATAGCATACAAGAG
TCGACACGTGCTCCTTAAATGCATATGCGAGGTTAGTTGTGTGTTCCGTG
AAGAACACAGAGCCGTCTCACAGCCCTAGTCGGGAAGTGTATTGGGCCGG
TACTCTGGCGAGTTTGACGATGACATACGTCCTTTGACGCTGGCGATTGC
AAACACACCCCCTATGACACTGGTACATATTTCCTGGACGACACACGCTC
GCTCATCCTTCGAACATTATCTGCGCGTCGCTCCGAAACCCCACAGCACT
GCGATCGCCAATCAACGGCACCATAGCTGTAGAAGTCCGCGTTGCCGTGG
CGTTGAGGATCCTGGCTGGCGCTAGTTACTGGCATGTTGCCCCCATGTTT
GGCTTGTCGGTGATCGACGCCATCAACAAGACGCCTGCGGTTGGTGCATT
CGACTTCCCCCTGACCGAGGAAGGCTGCACGCGAAATGCCAACAGATTCA
AGGTGAGGCCTAACGGTGGTCATTACTGCTGCTGTGGGTTGATCTTGGCG
GCATTCTCTTGACCAGCCGCGGGATGTCGTTTTTTTTTAATTACGTCTGG
CGTTTCCAGCCGTTTTAGTGTAGGGAGGCCTATATACAGCCTTCGACGGT
AACGCAGGAAAAAAAATGTCGTTCCCGGCGGATACAAGTTCGGATTGGTC
AGCATGCCTTTAATCGAAAAACAACCCCCGGGTCCCGGGTGGTTCGCCAG
CTGTTGGTCTTTGTACAAATGGCCTTTTCACAAATAAATGTTTTTTTTTG
TGTCATCATTAGTGTATGCTGGCCGTGTTGGTTCCGCCCCGCAACAGTGG
CCCGGCAACTGCTTGTAGTCAACCACGTGACTCTGAGATACCCTGGTACA
TTTTTACCGCTGAACCTGACGCAATATTAGGATTAGCAAACACGGTATGT
GCACCGTTGCTGATGATGGCGCCGTCGCACACGACATCAACCCACACAAC
GTACAGCCGAACGCAATTTACCGAAGTTCGTCAACGTCCATCTCTCGACC
ATTTTTTTTCCCCTTCCTGGCACTGCTACTTTCCCGCCCTCGTGTCTGCC
GTCTACAAATGCAGGAGAAGGGCACCGATGGCATTTTCTCCTGGGTCGTC
ACCGCCGTGGATGGTCTGTTCATC
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protein sequence of EsuBft1799_7a-0001

>EsuBft1799_7 ID=EsuBft1799_7|Name=EsuBft1799_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MAERRKRQHPQGPAAQRREKRRRGAIDEEREPIYEPKRLPWAQHDEADLD
KRQGWRRSYCMEKSSFRKLVELLRPSLAVNAFFGALILQQ
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mRNA from alignment at Scaffold_550:106921..108853+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_7a-0001 ID=EsuBft1799_7a-0001|Name=EsuBft1799_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1933bp|location=Sequence derived from alignment at Scaffold_550:106921..108853+ (Ectocarpus subulatus male Bft15b)
CCCCAAACCGCTTCCCGAGGCAACTCCACTACCATGGCTGAGCGCCGGAA
GCGCCAGCATCCCCAGGGGCCCGCAGCGCAACGTCGGGAGAAACGCCGTC
GAGGAGCTATCGACGAGGTCGGTGCAGCCCAGGAACACAGGAGATCTCTC
ACAGTCCTGGGTCTTCTGTAGTGGCGGCGGGCGTGGTGGCAGCAGGAGAA
GCTCATCGTGCCCACTGCCCTCAGGAACGGGAGCCCATCTACGAGCCCAA
GCGGCTTCCGTGGGCCCAACACGACGAGGCGGACCTCGATAAACGGCAAG
GCTGGCGGCGGTCGTACTGCATGGAGAAGTCCAGCTTCCGCAAGCTTGTC
GAGCTACTCCGCCCTTCGCTGGCAGTCAACGCCTTCTTCGGCGGTGAGTG
TTGATATGTACATGCAGCCGCCCACGGCAGGTATGCGTAAGGCTTCCTCC
CATGTATACGTAGAGAACAACGGGGAAGAGCAAGTCTAAAACCCAGGGGA
AACACTACTGCTGTAGACTGCCTTGCTGTTTGTCTGCTTCTTCAAAAAAA
AACTCTCTTCGAAACATGCAGCCAGGGTATGCATACACGCAGCAGCACTT
ATTCTACAGCAGTAGGGACAGCAGTGTCTGCATATGCATACAGCAGGAGT
CGTTGTATGGGAACGACAGGAAGATACTACTATGGTGGCGCTGAAATAAG
TTCAGCAGTATAAATAGAGCGTGCAACACGCCGGCACCACTACACGTTAT
ACATGCCTCGTCGGGAGCCAACACAGGTTGTCGTATCCCTCAATGATAGC
ATACAAGAGTCGACACGTGCTCCTTAAATGCATATGCGAGGTTAGTTGTG
TGTTCCGTGAAGAACACAGAGCCGTCTCACAGCCCTAGTCGGGAAGTGTA
TTGGGCCGGTACTCTGGCGAGTTTGACGATGACATACGTCCTTTGACGCT
GGCGATTGCAAACACACCCCCTATGACACTGGTACATATTTCCTGGACGA
CACACGCTCGCTCATCCTTCGAACATTATCTGCGCGTCGCTCCGAAACCC
CACAGCACTGCGATCGCCAATCAACGGCACCATAGCTGTAGAAGTCCGCG
TTGCCGTGGCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGCATGTTGCC
CCCATGTTTGGCTTGTCGGTGATCGACGCCATCAACAAGACGCCTGCGGT
TGGTGCATTCGACTTCCCCCTGACCGAGGAAGGCTGCACGCGAAATGCCA
ACAGATTCAAGGTGAGGCCTAACGGTGGTCATTACTGCTGCTGTGGGTTG
ATCTTGGCGGCATTCTCTTGACCAGCCGCGGGATGTCGTTTTTTTTTAAT
TACGTCTGGCGTTTCCAGCCGTTTTAGTGTAGGGAGGCCTATATACAGCC
TTCGACGGTAACGCAGGAAAAAAAATGTCGTTCCCGGCGGATACAAGTTC
GGATTGGTCAGCATGCCTTTAATCGAAAAACAACCCCCGGGTCCCGGGTG
GTTCGCCAGCTGTTGGTCTTTGTACAAATGGCCTTTTCACAAATAAATGT
TTTTTTTTGTGTCATCATTAGTGTATGCTGGCCGTGTTGGTTCCGCCCCG
CAACAGTGGCCCGGCAACTGCTTGTAGTCAACCACGTGACTCTGAGATAC
CCTGGTACATTTTTACCGCTGAACCTGACGCAATATTAGGATTAGCAAAC
ACGGTATGTGCACCGTTGCTGATGATGGCGCCGTCGCACACGACATCAAC
CCACACAACGTACAGCCGAACGCAATTTACCGAAGTTCGTCAACGTCCAT
CTCTCGACCATTTTTTTTCCCCTTCCTGGCACTGCTACTTTCCCGCCCTC
GTGTCTGCCGTCTACAAATGCAGGAGAAGGGCACCGATGGCATTTTCTCC
TGGGTCGTCACCGCCGTGGATGGTCTGTTCATC
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Coding sequence (CDS) from alignment at Scaffold_550:106921..108853+

>EsuBft1799_7a-0001 ID=EsuBft1799_7a-0001|Name=EsuBft1799_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_550:106921..108853+ (Ectocarpus subulatus male Bft15b)
ATGGCTGAGCGCCGGAAGCGCCAGCATCCCCAGGGGCCCGCAGCGCAACG
TCGGGAGAAACGCCGTCGAGGAGCTATCGACGAGGAACGGGAGCCCATCT
ACGAGCCCAAGCGGCTTCCGTGGGCCCAACACGACGAGGCGGACCTCGAT
AAACGGCAAGGCTGGCGGCGGTCGTACTGCATGGAGAAGTCCAGCTTCCG
CAAGCTTGTCGAGCTACTCCGCCCTTCGCTGGCAGTCAACGCCTTCTTCG
GCGCACTTATTCTACAGCAGTAG
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