EsuBft1799_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_3a-0001
Unique NameEsuBft1799_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:135236..137140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1799_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length125
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3aEsuBft1799_3aEctocarpus subulatus male Bft15bgeneScaffold_550 135236..137140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3a-0001EsuBft1799_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 135240..135401 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3a-0001-exonagat-exon-84920Ectocarpus subulatus male Bft15bexonScaffold_550 135236..136469 +
EsuBft1799_3a-0001-exonEsuBft1799_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 137118..137140 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3a-0001-exonagat-five_prime_utr-4206Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 135236..135239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3a-0001-cdsEsuBft1799_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 135240..135401 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_3a-0001-exonagat-three_prime_utr-6418Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 135402..136469 +
EsuBft1799_3a-0001-exonagat-three_prime_utr-6419Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 137118..137140 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAG
CAGGGTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGT
ACGTCAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAG
GTGGCATCGTCCGTGACGCCCTAACCGGCCATAGTTTACCTCTGTTTTTG
CAGCATGGTGCACCGTATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGA
CGAGGGGGAGGAGGGGGAGGCAAAGGATGCCTCCAGCGGAAAGCCCGTCC
CTGTCATCGTGCCTGCTGATGCTACGTTGGCGAAGCGCAGCTGGTGCTGT
TCGAAAACCAAGACAGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATG
GCATCGCCACGTCGACCATGGGATGATCGACCTCAACAACGATCGCTTCA
CTTGCTGCTTCTGCGATACCAAGGCGAAATCGGCATGTCGGTGTCACGCG
TGAGTACCCAATTTCGTTTTCCGCTGTTCAGAGTCTTTGTTCATTAGCAA
TTCTGTGTTATGATGTGACCAAGAGTAATGTGCCAGATCGAGTTCTCGGA
TGCTTCTCGCGCACGTGGGTTTCACCCGTTTCGATACCAACCACCCATGT
GGTTTTTACGAGAGGAATATGCAACAATATCTCGACTTCCACAGCGCTCT
CGCAGTCTGGTAGGTTGTCACATGTTTCCACCTAGCTGCTCCGGGACTGT
TGCTGGTGATCTATATCGACTCCAACTTTTCTGGTTGCTTGACCATCGGT
GTTTGTTAGGGCTTCACCCTCTCGCCGTGCGACCAAGACCGAAGTGTCCA
CAATACGACCTGCTCTTGGGGTGTGCACTGTAAGTTACTCAATTCCCCCC
CTCTACTTTTCCCACCATCACATGCTTCGTACTCGAACAGGTGCAACAAG
AAGAAAGCTGATAAGCGAGCGGCATCCCAACGAGCTCAAACCGGCCACAT
CCACGGGAGTAGCGTCTCCCGAGTGGTTCACCGTCAGACTCGAACCAGCG
CTTTCAAGCTCCGTCTGCCTCTCACGGTCGCGGCGGGCAACTCTAGAGAT
AGAGAGAAGGCACTGTTTTCGGTCTCTACTACCGCCCGCGGCGACCGTGT
CATGGTCGTCACCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCAAGCT
GCATCGTGAACTGCTGCGATAACCGATGCCACAACTGGGCACACGTCGAG
ACGGATT
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protein sequence of EsuBft1799_3a-0001

>EsuBft1799_3 ID=EsuBft1799_3|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MAAAAAAAATAIDGAAGCSWRGGVTAAAGWTGTSATPAAAVACAAEDGRW
HRP
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mRNA from alignment at Scaffold_550:135236..137140+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1905bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)
GGGGATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAG
CAGGGTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGT
ACGTCAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAG
GTGGCATCGTCCGTGACGCCCTAACCGGCCATAGTTTACCTCTGTTTTTG
CAGCATGGTGCACCGTATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGA
CGAGGGGGAGGAGGGGGAGGCAAAGGATGCCTCCAGCGGAAAGCCCGTCC
CTGTCATCGTGCCTGCTGATGCTACGTTGGCGAAGCGCAGCTGGTGCTGT
TCGAAAACCAAGACAGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATG
GCATCGCCACGTCGACCATGGGATGATCGACCTCAACAACGATCGCTTCA
CTTGCTGCTTCTGCGATACCAAGGCGAAATCGGCATGTCGGTGTCACGCG
TGAGTACCCAATTTCGTTTTCCGCTGTTCAGAGTCTTTGTTCATTAGCAA
TTCTGTGTTATGATGTGACCAAGAGTAATGTGCCAGATCGAGTTCTCGGA
TGCTTCTCGCGCACGTGGGTTTCACCCGTTTCGATACCAACCACCCATGT
GGTTTTTACGAGAGGAATATGCAACAATATCTCGACTTCCACAGCGCTCT
CGCAGTCTGGTAGGTTGTCACATGTTTCCACCTAGCTGCTCCGGGACTGT
TGCTGGTGATCTATATCGACTCCAACTTTTCTGGTTGCTTGACCATCGGT
GTTTGTTAGGGCTTCACCCTCTCGCCGTGCGACCAAGACCGAAGTGTCCA
CAATACGACCTGCTCTTGGGGTGTGCACTGTAAGTTACTCAATTCCCCCC
CTCTACTTTTCCCACCATCACATGCTTCGTACTCGAACAGGTGCAACAAG
AAGAAAGCTGATAAGCGAGCGGCATCCCAACGAGCTCAAACCGGCCACAT
CCACGGGAGTAGCGTCTCCCGAGTGGTTCACCGTCAGACTCGAACCAGCG
CTTTCAAGCTCCGTCTGCCTCTCACGGTCGCGGCGGGCAACTCTAGAGAT
AGAGAGAAGGCACTGTTTTCGGTCTCTACTACCGCCCGCGGCGACCGTGT
CATGGTCGTCACCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCAAGCT
GCATCGTGAACTGCTGCGATAACCGATGCCACAAGTGAGTCGATGTGTGT
AGTTGTTGGGGGATGTCACGAAACAACAGTACGTGTGTGGTGTTTGATAC
GCTTCCTTCTCACCGGCAAACCTATGATGGAAACTTGACGTCTTTGTTGC
AACCCAACGCGTTTATAACTCATTTGGAACAGAAAGGCATTTGCAGGTCA
CAGATAGGGGCCCGGCCGTTCAGCACTCACGTGTTATTTTTCGATAGTTG
CTGCTTCCTAAATTTATCAGAAACTAGTCAGAAATTCATCGGCATGTTTT
TTTTTTTCTGACGACGCTCTGTCACTTTCATGGTTGCTTTCGTATGGTTT
TGCAGTGTGCAATCGGAACCCGAGCAAGCGCCAAACGCCGAGCAGATTGC
AGGGGGCCAATGTTAGCACGCTGACGTCATTCTCGGAGATGGAACCACTC
CGAAGGCGGATATTCCTGAAGCAGAGCCGGTTGTCTTTGGCAAAGATGGG
GAAGGGATCGAAAGCGTTGGGATGCAGCGATAACCCAGATTGGTTTTGAC
TCAGGGTTGCTTTGACACCATTCTAAGGATGGCAGCGACTGCAGAGGAGC
ATGGGGTGCCGCTGTTGATGCGCTTAGGCGAGACTCAGACGTATGTTGTA
TACCATCCGGGTCATCGGTCTATTCCTGGCAGCTGGGCACACGTCGAGAC
GGATT
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Coding sequence (CDS) from alignment at Scaffold_550:135236..137140+

>EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAGCAGG
GTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGTACGT
CAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAGGTGG
CATCGTCCGTGA
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