Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1799_3 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 125 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGGGATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAG
CAGGGTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGT
ACGTCAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAG
GTGGCATCGTCCGTGACGCCCTAACCGGCCATAGTTTACCTCTGTTTTTG
CAGCATGGTGCACCGTATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGA
CGAGGGGGAGGAGGGGGAGGCAAAGGATGCCTCCAGCGGAAAGCCCGTCC
CTGTCATCGTGCCTGCTGATGCTACGTTGGCGAAGCGCAGCTGGTGCTGT
TCGAAAACCAAGACAGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATG
GCATCGCCACGTCGACCATGGGATGATCGACCTCAACAACGATCGCTTCA
CTTGCTGCTTCTGCGATACCAAGGCGAAATCGGCATGTCGGTGTCACGCG
TGAGTACCCAATTTCGTTTTCCGCTGTTCAGAGTCTTTGTTCATTAGCAA
TTCTGTGTTATGATGTGACCAAGAGTAATGTGCCAGATCGAGTTCTCGGA
TGCTTCTCGCGCACGTGGGTTTCACCCGTTTCGATACCAACCACCCATGT
GGTTTTTACGAGAGGAATATGCAACAATATCTCGACTTCCACAGCGCTCT
CGCAGTCTGGTAGGTTGTCACATGTTTCCACCTAGCTGCTCCGGGACTGT
TGCTGGTGATCTATATCGACTCCAACTTTTCTGGTTGCTTGACCATCGGT
GTTTGTTAGGGCTTCACCCTCTCGCCGTGCGACCAAGACCGAAGTGTCCA
CAATACGACCTGCTCTTGGGGTGTGCACTGTAAGTTACTCAATTCCCCCC
CTCTACTTTTCCCACCATCACATGCTTCGTACTCGAACAGGTGCAACAAG
AAGAAAGCTGATAAGCGAGCGGCATCCCAACGAGCTCAAACCGGCCACAT
CCACGGGAGTAGCGTCTCCCGAGTGGTTCACCGTCAGACTCGAACCAGCG
CTTTCAAGCTCCGTCTGCCTCTCACGGTCGCGGCGGGCAACTCTAGAGAT
AGAGAGAAGGCACTGTTTTCGGTCTCTACTACCGCCCGCGGCGACCGTGT
CATGGTCGTCACCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCAAGCT
GCATCGTGAACTGCTGCGATAACCGATGCCACAACTGGGCACACGTCGAG
ACGGATT back to topprotein sequence of EsuBft1799_3a-0001 >EsuBft1799_3 ID=EsuBft1799_3|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MAAAAAAAATAIDGAAGCSWRGGVTAAAGWTGTSATPAAAVACAAEDGRW
HRP back to topmRNA from alignment at Scaffold_550:135236..137140+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1905bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)
GGGGATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAG
CAGGGTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGT
ACGTCAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAG
GTGGCATCGTCCGTGACGCCCTAACCGGCCATAGTTTACCTCTGTTTTTG
CAGCATGGTGCACCGTATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGA
CGAGGGGGAGGAGGGGGAGGCAAAGGATGCCTCCAGCGGAAAGCCCGTCC
CTGTCATCGTGCCTGCTGATGCTACGTTGGCGAAGCGCAGCTGGTGCTGT
TCGAAAACCAAGACAGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATG
GCATCGCCACGTCGACCATGGGATGATCGACCTCAACAACGATCGCTTCA
CTTGCTGCTTCTGCGATACCAAGGCGAAATCGGCATGTCGGTGTCACGCG
TGAGTACCCAATTTCGTTTTCCGCTGTTCAGAGTCTTTGTTCATTAGCAA
TTCTGTGTTATGATGTGACCAAGAGTAATGTGCCAGATCGAGTTCTCGGA
TGCTTCTCGCGCACGTGGGTTTCACCCGTTTCGATACCAACCACCCATGT
GGTTTTTACGAGAGGAATATGCAACAATATCTCGACTTCCACAGCGCTCT
CGCAGTCTGGTAGGTTGTCACATGTTTCCACCTAGCTGCTCCGGGACTGT
TGCTGGTGATCTATATCGACTCCAACTTTTCTGGTTGCTTGACCATCGGT
GTTTGTTAGGGCTTCACCCTCTCGCCGTGCGACCAAGACCGAAGTGTCCA
CAATACGACCTGCTCTTGGGGTGTGCACTGTAAGTTACTCAATTCCCCCC
CTCTACTTTTCCCACCATCACATGCTTCGTACTCGAACAGGTGCAACAAG
AAGAAAGCTGATAAGCGAGCGGCATCCCAACGAGCTCAAACCGGCCACAT
CCACGGGAGTAGCGTCTCCCGAGTGGTTCACCGTCAGACTCGAACCAGCG
CTTTCAAGCTCCGTCTGCCTCTCACGGTCGCGGCGGGCAACTCTAGAGAT
AGAGAGAAGGCACTGTTTTCGGTCTCTACTACCGCCCGCGGCGACCGTGT
CATGGTCGTCACCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCAAGCT
GCATCGTGAACTGCTGCGATAACCGATGCCACAAGTGAGTCGATGTGTGT
AGTTGTTGGGGGATGTCACGAAACAACAGTACGTGTGTGGTGTTTGATAC
GCTTCCTTCTCACCGGCAAACCTATGATGGAAACTTGACGTCTTTGTTGC
AACCCAACGCGTTTATAACTCATTTGGAACAGAAAGGCATTTGCAGGTCA
CAGATAGGGGCCCGGCCGTTCAGCACTCACGTGTTATTTTTCGATAGTTG
CTGCTTCCTAAATTTATCAGAAACTAGTCAGAAATTCATCGGCATGTTTT
TTTTTTTCTGACGACGCTCTGTCACTTTCATGGTTGCTTTCGTATGGTTT
TGCAGTGTGCAATCGGAACCCGAGCAAGCGCCAAACGCCGAGCAGATTGC
AGGGGGCCAATGTTAGCACGCTGACGTCATTCTCGGAGATGGAACCACTC
CGAAGGCGGATATTCCTGAAGCAGAGCCGGTTGTCTTTGGCAAAGATGGG
GAAGGGATCGAAAGCGTTGGGATGCAGCGATAACCCAGATTGGTTTTGAC
TCAGGGTTGCTTTGACACCATTCTAAGGATGGCAGCGACTGCAGAGGAGC
ATGGGGTGCCGCTGTTGATGCGCTTAGGCGAGACTCAGACGTATGTTGTA
TACCATCCGGGTCATCGGTCTATTCCTGGCAGCTGGGCACACGTCGAGAC
GGATT back to topCoding sequence (CDS) from alignment at Scaffold_550:135236..137140+ >EsuBft1799_3a-0001 ID=EsuBft1799_3a-0001|Name=EsuBft1799_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_550:135236..137140+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCCGCCGCCGCCGCCGCCGCCACGGCTATTGATGGCGCAGCAGG
GTGCAGCTGGCGGGGCGGTGTTACAGCCGCAGCAGGTTGGACGGGTACGT
CAGCCACTCCCGCCGCTGCCGTTGCCTGTGCAGCAGAGGACGGCAGGTGG
CATCGTCCGTGA back to top
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