EsuBft1750_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1750_2a-0001
Unique NameEsuBft1750_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:619875..621263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1750_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_2aEsuBft1750_2aEctocarpus subulatus male Bft15bgeneScaffold_647 619875..621263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_2a-0001-exonEsuBft1750_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 619875..620170 -
EsuBft1750_2a-0001-exonagat-exon-31393Ectocarpus subulatus male Bft15bexonScaffold_647 621156..621263 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_2a-0001-exonagat-three_prime_utr-6148Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 619875..620122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_2a-0001-cdsEsuBft1750_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 620123..620170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_2a-0001EsuBft1750_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 620123..621263 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1750_2a-0001 ID=EsuBft1750_2a-0001|Name=EsuBft1750_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=404bp|location=Sequence derived from alignment at Scaffold_647:619875..621263- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAGACAGACATCACACGCACACGCGCGCCCGGAGCAGCGGAGCC
AGTGGACGTCAACAGGAGGACCAAACAGCCTCCTCAGCATCCTTTGGGCG
GCCCTAAGGTGCGACCGAGAGACGCGAGAGATGCCCGCCCACTGGACTGT
AGTTAGTCAGCCAATCAGAAATTGTCCAACGTGTCGGACACTTTTTTTGG
ATGGATCGCAGCCAATCAGCAATCGTGCACGAACCGTACAGAGTCGTGTC
ATAGTATTTTCAAGTGTTTTGTACGGTTGGAGCATGATTCAAGTTTCCAG
TAAACTTTTAGAGCTCCTTATACAGTTGGTATCTCACGGTTGGAGGGGAA
AAGGAGTGGCGAAGATTCCTGCGGGGGAAATGATTGATGAAAGGGTCTGA
TTTC
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protein sequence of EsuBft1750_2a-0001

>EsuBft1750_2 ID=EsuBft1750_2|Name=EsuBft1750_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MCKTDITRTRAPGAAEPVDVNRRTKQPPQHPLGGPKVRPRDARDARPLDC
S
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mRNA from alignment at Scaffold_647:619875..621263-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1750_2a-0001 ID=EsuBft1750_2a-0001|Name=EsuBft1750_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1389bp|location=Sequence derived from alignment at Scaffold_647:619875..621263- (Ectocarpus subulatus male Bft15b)
ATGTGCAAGACAGACATCACACGCACACGCGCGCCCGGAGCAGCGGAGCC
AGTGGACGTCAACAGGAGGACCAAACAGCCTCCTCAGCATCCTTTGGGCG
GCCCTAAGGTGTGTTCATCTGTCTCTGCGCGCGTAAACGTGCGTGTGGTT
GTCTGGTGCAGGCTCGCAGGCCGCCGCGCGCATGCCAGACAAAAGACGGC
GACCATACGAGCCCCTCGCACCACCACCTCGGGTAGAACCGATCGCTTTC
CCTTCCCATGGCATAAACCAAGCTTCCTATGTGCTTTTAGTTTATTTTTG
AATCGTCTGTGTTCATCGCCTTGCGGCTGCAACGTGTTTCACACGCCAGA
CCGCATCCCGCCCAATTTTTTTTTTTGCAGTTTTGGTGTTTTCCCACCCC
GATTTTCGAAAAAATATAGTTTGGGGGGTAGGGGGTGATACTTCGAAAAA
AACGACTTGAAAATAGACTACTGCTTGTTTAAGTGTACACGTATAGCTGT
GTATCTCGGCACCAGAGCATCCGTTGACCCTAAAAAAAATATCCACGTGT
GCGCCTCACCTAGCCGAACAATATATTCCGAGGATTTTATTTTCCGACAA
GATCCTGATTTTTTCAAGCTAAAGTAACGCTTACAGCAGTAAGTCTACAC
GTATAGCTTTCTAAGTCGCCACCATTTTCATTTCTGAACTCGACATTTCG
CATGCTTGAACCCGTGGCCCATGTTCACAAGTAGATTTTTTTTGTTGTTG
AATTCCAAGCACATCTCGATTTTTAAGTATGTTTGAAGATCCACATTGGT
CAGTCAAGACGTTATGCGGCTCCAAACCGTCCAGGATTTTTCTCGCCTCG
AAACTTGGCACACGTGCGTGTCTGACCCGTCCTCACCCATCCCCGCAACA
TTAACGATCAAATTCGAAGTACATGCCGCTGTGTGGCGCCCGCTTGTGGC
AAAAAACACACACGGGCCCCCCTGACCACTAACTCCCGCCCCCGCTCCCC
AGAGACGGCCCAATAACTATGAAATGTGCCACGCTTGTTCTCCCTCCCCC
CCTGCCCACCCCCTCACATTTTTTTCGAGCAAAATTGACACAGGTGCGAC
CGAGAGACGCGAGAGATGCCCGCCCACTGGACTGTAGTTAGTCAGCCAAT
CAGAAATTGTCCAACGTGTCGGACACTTTTTTTGGATGGATCGCAGCCAA
TCAGCAATCGTGCACGAACCGTACAGAGTCGTGTCATAGTATTTTCAAGT
GTTTTGTACGGTTGGAGCATGATTCAAGTTTCCAGTAAACTTTTAGAGCT
CCTTATACAGTTGGTATCTCACGGTTGGAGGGGAAAAGGAGTGGCGAAGA
TTCCTGCGGGGGAAATGATTGATGAAAGGGTCTGATTTC
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Coding sequence (CDS) from alignment at Scaffold_647:619875..621263-

>EsuBft1750_2a-0001 ID=EsuBft1750_2a-0001|Name=EsuBft1750_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_647:619875..621263- (Ectocarpus subulatus male Bft15b)
ATGTGCAAGACAGACATCACACGCACACGCGCGCCCGGAGCAGCGGAGCC
AGTGGACGTCAACAGGAGGACCAAACAGCCTCCTCAGCATCCTTTGGGCG
GCCCTAAGGTGCGACCGAGAGACGCGAGAGATGCCCGCCCACTGGACTGT
AGTTAG
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