EsuBft1743_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1743_6a-0001
Unique Name	EsuBft1743_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:261202..263971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1743_6
Protein domains	IPR014710
Protein domains	IPR018490
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	48
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_6a	EsuBft1743_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 261202..263971 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_6a-0001-exon	EsuBft1743_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 261202..261327 +
EsuBft1743_6a-0001-exon	agat-exon-106458	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 263178..263422 +
EsuBft1743_6a-0001-exon	agat-exon-106459	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 263857..263971 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_6a-0001-cds	EsuBft1743_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 261202..261327 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_6a-0001	EsuBft1743_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 261202..263971 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:261202..263971+
coding sequence from alignment at Scaffold_70:261202..263971+

spliced messenger RNA

>EsuBft1743_6a-0001 ID=EsuBft1743_6a-0001|Name=EsuBft1743_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=486bp|location=Sequence derived from alignment at Scaffold_70:261202..263971+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTGCAGGTACTCCTGGTCGAGTCTGGTGAGGCTGTACGATTGGG
AGACCCGCGAGAGAATACCATCAGGAACTACAGCTCGCTGCGAATCAGAG
CAGGGCAGTTGTTTGGAGCTGAAGAGGCCCTCTCCGGGCTACCCAGCTAC
ACCTGCAACCTCACGGCCACGTGCCCACTCCAGTTCTTCGCCATCCCCGC
GGAGGCATTTCTCCGAGCAATAGATGGCGTGTGGACTGAGCCTTTGTACC
GGCTCCGGTCCAGAGTACGTGTGGTCGGCGACGGCTGCAGAGCCGATTCC
GCGGGACAGGCACGCCCTTTGACGGCCGCCGGGATCGACGGAGAGCGCTC
TCTCCCGCGGAACTGGTCAAGCAACGATGCATTGCCGAACCTGACGAAGT
CGAGAACAAGACCGCCACCCGTGATGCTGACACCCATACCCCTGTTCTCC
GGAATCCAGGGGGGATCGGGCTTGGAGGAGAGGTGA

protein sequence of EsuBft1743_6a-0001

>EsuBft1743_6 ID=EsuBft1743_6|Name=EsuBft1743_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=161bp
MHLQVLLVESGEAVRLGDPRENTIRNYSSLRIRAGQLFGAEEALSGLPSY
TCNLTATCPLQFFAIPAEAFLRAIDGVWTEPLYRLRSRVRVVGDGCRADS
AGQARPLTAAGIDGERSLPRNWSSNDALPNLTKSRTRPPPVMLTPIPLFS
GIQGGSGLEER

mRNA from alignment at Scaffold_70:261202..263971+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1743_6a-0001 ID=EsuBft1743_6a-0001|Name=EsuBft1743_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2770bp|location=Sequence derived from alignment at Scaffold_70:261202..263971+ (Ectocarpus subulatus male Bft15b)
ATGCACTTGCAGGTACTCCTGGTCGAGTCTGGTGAGGCTGTACGATTGGG
AGACCCGCGAGAGAATACCATCAGGAACTACAGCTCGCTGCGAATCAGAG
CAGGGCAGTTGTTTGGAGCTGAAGAGGTGTGCATGGGAGGCGGCGGGGGG
GGGGCGGGGGGGACTCATAGTCGTGCATTCCGTAGTCGTTATTAGACCAT
TGACCTCGCATCCCTACAAAGCACGCCGGGTTATCACCGGACCAGGCTCT
GACATCATCAAACGCGAAGCGCCGTGAGGTATTCGGTGAATCACATGGAG
GGAGGAACAACGATTGTGCAAGTCGTCGGACGCTCAAGGTTGTATCTATG
TTACCTGTGTAGAACAGGTGTTTGAGAGAGGGCTAGCGAGTTTCGGCTGC
TGGCACACAAGCTAAAAAAAAACTCTCGTTGTGTCTGTCGACTGAAATCA
GACAGTGGCGCAACCCGTACGTCCCTCCCGAGGTTGACATCGGGTTGAGG
GAAAACCTAGCGGCATCACGCCACGCAGCAGTACGCATTCTTCCGTGATG
AGGGGGCTGCTGTACAACACGGTGGTCAGGTAGTCCGCTTGGTCTTAGTT
CACCCCTGTATTCCCCTACTTGAACTCCTCATCTGCACGCCGGGTCACTA
GGTATTTTCGCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCATCGGGGTTGGGTTTTCGTCGCTTGGCAAC
GACGTCGTAGAACAAGCCAATTCACTCCGTGAACTCGGCCACCAGGTTAC
CGCTTTTTTTCATTCCCTCTGTATTTCTTTTCGGCGGTAACGATAATTGT
GGTCGAGTAGATGACGTTGTGCGGGGTCGAGAATCCTCACTCCGCGCAAG
GGGGATGATCGCACTACGTTGTGTTAAATCGGTCAAGCACCCTCGAGGCA
GCTACACAGTGCTTACAACTGTCTCTGNGGTGATGTGAGAGCCTGGTCCG
GTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAAT
GGTCTAACGACTACGGCATGCATGACTATGAGTACACCCTCCCCTCAATC
GGCGGGAAGTAATACCAATAATTATTGTAGGGGAAGAAGAAGGAACGATT
GGCCATCGATGACCGGTCCTGTGTGAGTAATACTCCGTCCTCTCGAGGGC
GCGTGGTCAATGGTCAAATCGCTGAGGCATTTAGAACATGAGGACCCCTC
CCCGCCATCATTTTTTTCATCCGCAGGCCCTCTCCGGGCTACCCAGCTAC
ACCTGCAACCTCACGGCCACGTGCCCACTCCAGTTCTTCGCCATCCCCGC
GGAGGCATTTCTCCGAGCAATAGATGGCGTGTGGACTGAGCCTTTGTACC
GGCTCCGGTCCAGAGTACGTGTGGTCGGCGACGGCTGCAGAGCCGATTCC
GCGGGACAGGCACGCCCTTTGACGGCCGCCGGGATCGACGGAGAGCGCTC
TCTCCCGCGGAACTGGTCAAGGTACACACGGGCCTCTCTACCGCAAAAAT
TACGCCGGCTGTTGTAGCGCCGTTTGACTCGATTAGCGGTGAGGGCGGCT
CGGCCCGCGCTTGTTTTGGACCTACAGTAGGTCGTGTGACGAGATCATTT
GAGCCCTTGTTATTTCGGTGCGCAGTAAACCCATTTTTGAGGATATGGGT
GGGGAGGAGAGGATGGTGAGACGACCTACTGTATGCACGTCGTACTCCAA
GGGCTCGACTTCGATCCACCGGCCAGTCCCTGATTGAATCGTTTGTTTGC
CTTCCAACAGAAGACCCTGCAGTAGCAGCTCGCTCTCTGTTCGTACATAC
AAGCGAGGTTTTTGTTCAGTCAAGACAGATGTCCGTGCACCCCTTCCGCG
TGCCGCCGCCGCCCAACATGAATGGCCTGCCTTTTCTTCTATACGGAACA
TGCAGCAACGATGCATTGCCGAACCTGACGAAGTCGAGAACAAGACCGCC
ACCCGTGATGCTGACACCCATACCCCTGTTCTCCGGAATCCAGGGGGGAT
CGGGCTTGGAGGAGAGGTGA

Coding sequence (CDS) from alignment at Scaffold_70:261202..263971+

>EsuBft1743_6a-0001 ID=EsuBft1743_6a-0001|Name=EsuBft1743_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=486bp|location=Sequence derived from alignment at Scaffold_70:261202..263971+ (Ectocarpus subulatus male Bft15b)
ATGCACTTGCAGGTACTCCTGGTCGAGTCTGGTGAGGCTGTACGATTGGG
AGACCCGCGAGAGAATACCATCAGGAACTACAGCTCGCTGCGAATCAGAG
CAGGGCAGTTGTTTGGAGCTGAAGAGGCCCTCTCCGGGCTACCCAGCTAC
ACCTGCAACCTCACGGCCACGTGCCCACTCCAGTTCTTCGCCATCCCCGC
GGAGGCATTTCTCCGAGCAATAGATGGCGTGTGGACTGAGCCTTTGTACC
GGCTCCGGTCCAGAGTACGTGTGGTCGGCGACGGCTGCAGAGCCGATTCC
GCGGGACAGGCACGCCCTTTGACGGCCGCCGGGATCGACGGAGAGCGCTC
TCTCCCGCGGAACTGGTCAAGCAACGATGCATTGCCGAACCTGACGAAGT
CGAGAACAAGACCGCCACCCGTGATGCTGACACCCATACCCCTGTTCTCC
GGAATCCAGGGGGGATCGGGCTTGGAGGAGAGGTGA