EsuBft1663_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1663_7a-0001
Unique NameEsuBft1663_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:315912..317898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G557
ProteomeIdEsuBft1663_7
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2880.D7G557|-
Length168
Hectar predicted targeting categoryother localisation
Evalue0.000128
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_7aEsuBft1663_7aEctocarpus subulatus male Bft15bgeneScaffold_499 315912..317898 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_7a-0001-exonagat-exon-25531Ectocarpus subulatus male Bft15bexonScaffold_499 315912..317266 -
EsuBft1663_7a-0001-exonagat-exon-25530Ectocarpus subulatus male Bft15bexonScaffold_499 317408..317499 -
EsuBft1663_7a-0001-exonEsuBft1663_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 317659..317898 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_7a-0001-exonagat-three_prime_utr-5621Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 315912..316368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_7a-0001-cdsEsuBft1663_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 316369..317266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_7a-0001EsuBft1663_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 316369..317898 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1663_7a-0001 ID=EsuBft1663_7a-0001|Name=EsuBft1663_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1687bp|location=Sequence derived from alignment at Scaffold_499:315912..317898- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGTGTTTCTTTCTTCAGATTGAATCGGAGGACGGCGAAGGTGC
GATGCACGGGGCGGAGGAGCAGGGGCAGGAGCAGGGGGCTGAAGACACAG
AGAAGAACAAAGATGAAGAAGACATGGAGGAGGAGGAGACGGAGGAGGAG
GAGGATGGTGAATGGGAGGAGGAGCGTAGTGATGGCACGGAGCAAGGGCG
GGGGGACGACACGGATGAGGGCGCGAGCGAAGATGAGCAGGCAGGGAATG
GAAAGCGGAAGCGTAGTAGCGGCAAACAAAAGGCCCCGGTCAAGAGAAGG
GCTCAGCCAGCTCAGCACAACAACACCAGAAGCCGCGCACAACAGCCACC
CGAGCGTCAACGAGGGGGTCCTGTGTCGGAAAATGGCGGAAGCAAGCACG
CTAAGCGTCGCTCCACGTGTAAAAACCCGTGTTGCAACAAAACACCGTCG
TTCGGCGTGGAGGGCACCAAGACGGTGCAGTTCTGTTACTCGCATGCCAG
GTCGGGTATGGTGAACCTTAAGAACAGGAGGTGTGAAAACCCGGATTGCA
ACAAACAACAGCCGTCGTACGGCGTGGAGGGCACGACGAAGGGGCGGTTC
TGCTTCGAACACAAGGAAGCGGGAATGATGAACGTCGTCGGCAAAAGGTG
CGACCACCCGGATTGCAACAAACATCCGTCGTTCGGCGTGGAGGGCACCA
AGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAACCTC
AAGCAGAAGACGTGTGGCCAACATGGTTGCACCACTTCGGCGACGTGCAG
AGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGG
GAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAACATGGTTGCACCACT
TCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAA
GCACGCCATGCAGGGAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAAC
ATGGTTGCACCACTTCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCA
CTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAGCGTCAGCAAGAA
GTGTGGCCGCCACGGTTGCACCAAGCACCGGACGTACGGCGTGGACGGTG
GGAAGCGGGAATTTTGCGCCGAACACGCTGAGGGGGGGATGGTGGACTTC
ACAGACAAGTGTAGGAGAAAGAATACGTAAACAAACTGTCTCAAGCGTTT
TGTAAGAAATACGGTGTGGTTACTTCAGTTAGAGGGGCGGCGTGCACGCA
AGCGGGTGTCCCTCCACCATTAATCGTGAGCCTTGATTTTCGGGTTGGGG
GAGGGGGGGCTTTGAATATTTTAGCGGGGACGTCGACACGCAAAATTGTA
TTGCGTTAGCAGAGTCAGTATGCAGTGTACACGCGGTGAAAGTGACGTTT
GAAGAGGTGCCTGCTGTGGACGACGATATGAACATCGACGGTGAAGCAAC
CAAAATCAGTTAACACGAAAGCGTTCTCACCATCTACGTCACATGCTTTA
ACAGCGCACCCAAAACGCATATTTGTTCGTTGGTGATGCTGTGACGAGTG
CGGAGATCGGGGGTGAGGCGCCAACCTGGCACGGATGGGTAGGCGTATAT
TCAGAGGGAGCAGAAACATGGGCTTTGTGGCGCGTTC
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protein sequence of EsuBft1663_7a-0001

>EsuBft1663_7 ID=EsuBft1663_7|Name=EsuBft1663_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=409bp
MFSCFFLQIESEDGEGAMHGAEEQGQEQGAEDTEKNKDEEDMEEEETEEE
EDGEWEEERSDGTEQGRGDDTDEGASEDEQAGNGKRKRSSGKQKAPVKRR
AQPAQHNNTRSRAQQPPERQRGGPVSENGGSKHAKRRSTCKNPCCNKTPS
FGVEGTKTVQFCYSHARSGMVNLKNRRCENPDCNKQQPSYGVEGTTKGRF
CFEHKEAGMMNVVGKRCDHPDCNKHPSFGVEGTKTALFCSKHAMQGMVNL
KQKTCGQHGCTTSATCRAEGTKTALFCSKHAMQGMVNLKQKTCGQHGCTT
SATCRAEGTKTALFCSKHAMQGMVNLKQKTCGQHGCTTSATCRAEGTKTA
LFCSKHAMQGMVSVSKKCGRHGCTKHRTYGVDGGKREFCAEHAEGGMVDF
TDKCRRKNT
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mRNA from alignment at Scaffold_499:315912..317898-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1663_7a-0001 ID=EsuBft1663_7a-0001|Name=EsuBft1663_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1987bp|location=Sequence derived from alignment at Scaffold_499:315912..317898- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGTGTTTCTTTCTTCAGATTGAATCGGAGGACGGCGAAGGTGC
GATGCACGGGGCGGAGGAGCAGGGGCAGGAGCAGGGGGCTGAAGACACAG
AGAAGAACAAAGATGAAGAAGACATGGAGGAGGAGGAGACGGAGGAGGAG
GAGGATGGTGAATGGGAGGAGGAGCGTAGTGATGGCACGGAGCAAGGGCG
GGGGGACGACACGGATGAGGGCGCGAGCGAAGATGAGCAGGTAAGCAAGA
TCGTGCTTTTCGTATTCGCTTTGTGTAAAAGCTGGTGATGCCTCAATACT
ATATAGTAGTGAACGAAGTTCGTCACATATTGGTAGCAGCATGAACAGAT
TTTTTACTCGACCATCCATGCACGCATCCGGTCATCTTTGTCGCTCTAGG
CAGGGAATGGAAAGCGGAAGCGTAGTAGCGGCAAACAAAAGGCCCCGGTC
AAGAGAAGGGCTCAGCCAGCTCAGCACAACAACACCAGAAGGTGAGCATT
GCAAAGTGTGTTGACCACAGAAGTTGCAGGCAAAGTTGTTTACATGTCCA
TCCTTCACTCGACCTACTCGGGTGTCCTCACACACATGACTGAATCTATT
TTCGTTTCGCCTCGCCTGTTTCCGTGATGCAGCCGCGCACAACAGCCACC
CGAGCGTCAACGAGGGGGTCCTGTGTCGGAAAATGGCGGAAGCAAGCACG
CTAAGCGTCGCTCCACGTGTAAAAACCCGTGTTGCAACAAAACACCGTCG
TTCGGCGTGGAGGGCACCAAGACGGTGCAGTTCTGTTACTCGCATGCCAG
GTCGGGTATGGTGAACCTTAAGAACAGGAGGTGTGAAAACCCGGATTGCA
ACAAACAACAGCCGTCGTACGGCGTGGAGGGCACGACGAAGGGGCGGTTC
TGCTTCGAACACAAGGAAGCGGGAATGATGAACGTCGTCGGCAAAAGGTG
CGACCACCCGGATTGCAACAAACATCCGTCGTTCGGCGTGGAGGGCACCA
AGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAACCTC
AAGCAGAAGACGTGTGGCCAACATGGTTGCACCACTTCGGCGACGTGCAG
AGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGG
GAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAACATGGTTGCACCACT
TCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAA
GCACGCCATGCAGGGAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAAC
ATGGTTGCACCACTTCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCA
CTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAGCGTCAGCAAGAA
GTGTGGCCGCCACGGTTGCACCAAGCACCGGACGTACGGCGTGGACGGTG
GGAAGCGGGAATTTTGCGCCGAACACGCTGAGGGGGGGATGGTGGACTTC
ACAGACAAGTGTAGGAGAAAGAATACGTAAACAAACTGTCTCAAGCGTTT
TGTAAGAAATACGGTGTGGTTACTTCAGTTAGAGGGGCGGCGTGCACGCA
AGCGGGTGTCCCTCCACCATTAATCGTGAGCCTTGATTTTCGGGTTGGGG
GAGGGGGGGCTTTGAATATTTTAGCGGGGACGTCGACACGCAAAATTGTA
TTGCGTTAGCAGAGTCAGTATGCAGTGTACACGCGGTGAAAGTGACGTTT
GAAGAGGTGCCTGCTGTGGACGACGATATGAACATCGACGGTGAAGCAAC
CAAAATCAGTTAACACGAAAGCGTTCTCACCATCTACGTCACATGCTTTA
ACAGCGCACCCAAAACGCATATTTGTTCGTTGGTGATGCTGTGACGAGTG
CGGAGATCGGGGGTGAGGCGCCAACCTGGCACGGATGGGTAGGCGTATAT
TCAGAGGGAGCAGAAACATGGGCTTTGTGGCGCGTTC
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Coding sequence (CDS) from alignment at Scaffold_499:315912..317898-

>EsuBft1663_7a-0001 ID=EsuBft1663_7a-0001|Name=EsuBft1663_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1230bp|location=Sequence derived from alignment at Scaffold_499:315912..317898- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGTGTTTCTTTCTTCAGATTGAATCGGAGGACGGCGAAGGTGC
GATGCACGGGGCGGAGGAGCAGGGGCAGGAGCAGGGGGCTGAAGACACAG
AGAAGAACAAAGATGAAGAAGACATGGAGGAGGAGGAGACGGAGGAGGAG
GAGGATGGTGAATGGGAGGAGGAGCGTAGTGATGGCACGGAGCAAGGGCG
GGGGGACGACACGGATGAGGGCGCGAGCGAAGATGAGCAGGCAGGGAATG
GAAAGCGGAAGCGTAGTAGCGGCAAACAAAAGGCCCCGGTCAAGAGAAGG
GCTCAGCCAGCTCAGCACAACAACACCAGAAGCCGCGCACAACAGCCACC
CGAGCGTCAACGAGGGGGTCCTGTGTCGGAAAATGGCGGAAGCAAGCACG
CTAAGCGTCGCTCCACGTGTAAAAACCCGTGTTGCAACAAAACACCGTCG
TTCGGCGTGGAGGGCACCAAGACGGTGCAGTTCTGTTACTCGCATGCCAG
GTCGGGTATGGTGAACCTTAAGAACAGGAGGTGTGAAAACCCGGATTGCA
ACAAACAACAGCCGTCGTACGGCGTGGAGGGCACGACGAAGGGGCGGTTC
TGCTTCGAACACAAGGAAGCGGGAATGATGAACGTCGTCGGCAAAAGGTG
CGACCACCCGGATTGCAACAAACATCCGTCGTTCGGCGTGGAGGGCACCA
AGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAACCTC
AAGCAGAAGACGTGTGGCCAACATGGTTGCACCACTTCGGCGACGTGCAG
AGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAAGCACGCCATGCAGG
GAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAACATGGTTGCACCACT
TCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCACTGTTCTGCTCCAA
GCACGCCATGCAGGGAATGGTGAACCTCAAGCAGAAGACGTGTGGCCAAC
ATGGTTGCACCACTTCGGCGACGTGCAGAGCGGAGGGCACCAAGACGGCA
CTGTTCTGCTCCAAGCACGCCATGCAGGGAATGGTGAGCGTCAGCAAGAA
GTGTGGCCGCCACGGTTGCACCAAGCACCGGACGTACGGCGTGGACGGTG
GGAAGCGGGAATTTTGCGCCGAACACGCTGAGGGGGGGATGGTGGACTTC
ACAGACAAGTGTAGGAGAAAGAATACGTAA
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