EsuBft1663_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1663_6a-0001
Unique NameEsuBft1663_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:319458..320596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1663_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length88
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6aEsuBft1663_6aEctocarpus subulatus male Bft15bgeneScaffold_499 319458..320596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6a-0001EsuBft1663_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 320103..320558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6a-0001-exonagat-exon-25528Ectocarpus subulatus male Bft15bexonScaffold_499 319458..320139 -
EsuBft1663_6a-0001-exonEsuBft1663_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 320255..320376 -
EsuBft1663_6a-0001-exonagat-exon-25529Ectocarpus subulatus male Bft15bexonScaffold_499 320520..320596 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6a-0001-exonagat-three_prime_utr-5620Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 319458..320102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6a-0001-cdsEsuBft1663_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 320103..320139 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1663_6a-0001-exonagat-five_prime_utr-3645Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 320559..320596 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1663_6a-0001 ID=EsuBft1663_6a-0001|Name=EsuBft1663_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=881bp|location=Sequence derived from alignment at Scaffold_499:319458..320596- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGCGGGGACGATGGTGTTTTGATCCCTGACGTCGGCATGTCAGGCGAT
CTCCCTGCGGTGGAGCAGTCTGGTTCGCTCGCACCGACACACCAGGCATT
GGAGCGAGAGGGAGGACAAGTTGAAATCGAAAGGAGGGAAGCAGGGGACG
CAGTCAGAGAAAAGAGGCTGCTGAGGAACGCGAGCGGAAGGCACGAGAGG
CAATCGAGAAGCTACAAACGGACATGGAGAGAGTGAAGGCCGACATCGAA
CGTGCTTTGAGGAAGAATGAGAAGTGCCAATCCAAGGCCCCACGAGTGAG
GTTGCCACGCCGCTGTAGGGAGAAAGCTCAAGAAAAGGACGGGCCCAAAG
AAATGGCGGCCCTTGACTTTCGATCTATGCATAATGAGGTGCCCTTTGTG
TGGCTAAAGGAGCATTTTGAAGTGGACGAGAGGCCAAGCCAGATTGAAGG
CCAAGGGGCGTTTCTCAAGCGATGCGCACGCAAAGGCAAAACAGTGCATA
CGTCGGTGTTGCCTAGCTCCGAATTCGACGATATTTTTACGATAGAACAG
TACGACTGCTGCTATCGCGTGATTCATGCTGAAAAGAGCGGGGTAGTGTA
CATCGACCCAGGTGCTCTTTTCCGAGGCAACTTGATGGGGTGCCTGGAAG
ACATGGGAAGTCGGATGATTCGTCTTCTAAATCATTGCAGCTCGCCCAAT
GCGGAGCTAACTTTCAGCGGCAGCTCCTGACTGGTATGAATCAACGAAAG
CTGGACAGGCGGTGATTACAACCTGGTACACGTGCTCACTCGTAACTCTT
CGACCCGTGCGAGCAGGGGAAGAACTTACGATTCGCTATGCCAGGGTTAC
GCCCGAGTAGGAGCGGGGTAAGCTGGACAGG
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protein sequence of EsuBft1663_6a-0001

>EsuBft1663_6 ID=EsuBft1663_6|Name=EsuBft1663_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MSGDLPAVEQSGSLAPTHQALEREGGQVEIERREAGDAVREKRLLRNASG
RHERQSRSYKRTWRE
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mRNA from alignment at Scaffold_499:319458..320596-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1663_6a-0001 ID=EsuBft1663_6a-0001|Name=EsuBft1663_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1139bp|location=Sequence derived from alignment at Scaffold_499:319458..320596- (Ectocarpus subulatus male Bft15b)
GCGGCGGGGACGATGGTGTTTTGATCCCTGACGTCGGCATGTCAGGCGAT
CTCCCTGCGGTGGAGCAGTCTGGTTCGGTGAGTGAGCGGCTTGAGAACGA
GAGAGTGTGTGTGTGTGTGTAAATTGTCACCAAAAGCGCTGGGTGCACTT
TTCCTGTGAAAACCGTGGCCCACAAGTTATGTTTCTCCCTCCGCGCGCGA
CTCGGCCACGGCTCGAACAGCTCGCACCGACACACCAGGCATTGGAGCGA
GAGGGAGGACAAGTTGAAATCGAAAGGAGGGAAGCAGGGGACGCAGTCAG
AGAAAAGAGGCTGCTGAGGAACGCGAGCGGAAGGCACGAGAGGTGGGTTG
CCGACGTTTGTGTGTGTCCAAGTTGTAAACGCTTTGTCTTGTCGCTGGTC
CCCTGCACATGGCAGCATCACGGAGCGATCCCCATGTGTGTATGTTTTGA
TCGGCAGGCAATCGAGAAGCTACAAACGGACATGGAGAGAGTGAAGGCCG
ACATCGAACGTGCTTTGAGGAAGAATGAGAAGTGCCAATCCAAGGCCCCA
CGAGTGAGGTTGCCACGCCGCTGTAGGGAGAAAGCTCAAGAAAAGGACGG
GCCCAAAGAAATGGCGGCCCTTGACTTTCGATCTATGCATAATGAGGTGC
CCTTTGTGTGGCTAAAGGAGCATTTTGAAGTGGACGAGAGGCCAAGCCAG
ATTGAAGGCCAAGGGGCGTTTCTCAAGCGATGCGCACGCAAAGGCAAAAC
AGTGCATACGTCGGTGTTGCCTAGCTCCGAATTCGACGATATTTTTACGA
TAGAACAGTACGACTGCTGCTATCGCGTGATTCATGCTGAAAAGAGCGGG
GTAGTGTACATCGACCCAGGTGCTCTTTTCCGAGGCAACTTGATGGGGTG
CCTGGAAGACATGGGAAGTCGGATGATTCGTCTTCTAAATCATTGCAGCT
CGCCCAATGCGGAGCTAACTTTCAGCGGCAGCTCCTGACTGGTATGAATC
AACGAAAGCTGGACAGGCGGTGATTACAACCTGGTACACGTGCTCACTCG
TAACTCTTCGACCCGTGCGAGCAGGGGAAGAACTTACGATTCGCTATGCC
AGGGTTACGCCCGAGTAGGAGCGGGGTAAGCTGGACAGG
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Coding sequence (CDS) from alignment at Scaffold_499:319458..320596-

>EsuBft1663_6a-0001 ID=EsuBft1663_6a-0001|Name=EsuBft1663_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_499:319458..320596- (Ectocarpus subulatus male Bft15b)
ATGTCAGGCGATCTCCCTGCGGTGGAGCAGTCTGGTTCGCTCGCACCGAC
ACACCAGGCATTGGAGCGAGAGGGAGGACAAGTTGAAATCGAAAGGAGGG
AAGCAGGGGACGCAGTCAGAGAAAAGAGGCTGCTGAGGAACGCGAGCGGA
AGGCACGAGAGGCAATCGAGAAGCTACAAACGGACATGGAGAGAGTGA
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