EsuBft1631_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1631_7a-0001
Unique Name	EsuBft1631_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:4138..7520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft1631_7
Protein domains	PTHR19303
Protein domains	IPR009057
Protein domains	IPR007889
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	261
Evalue	7.82e-90
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a	EsuBft1631_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 4138..7520 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a-0001	EsuBft1631_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 5292..7381 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a-0001-exon	agat-exon-92260	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 4138..6002 -
EsuBft1631_7a-0001-exon	EsuBft1631_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 6197..6291 -
EsuBft1631_7a-0001-exon	agat-exon-92261	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 6871..7520 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a-0001-exon	agat-three_prime_utr-5394	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_265 4138..5291 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a-0001-cds	EsuBft1631_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 5292..6002 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_7a-0001-exon	agat-five_prime_utr-3505	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_265 7382..7520 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:4138..7520-
coding sequence from alignment at Scaffold_265:4138..7520-

spliced messenger RNA

>EsuBft1631_7a-0001 ID=EsuBft1631_7a-0001|Name=EsuBft1631_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2610bp|location=Sequence derived from alignment at Scaffold_265:4138..7520- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCCGCGCAACCGGAGCTCTCGTTTGAGCACCACAGCGTCGCACGCC
AAGCATTCTACCCCGAGATACAACCGAGGGAGCCACCACAGCTCCCGCTG
CTAGCCACCTTCATCGTTTTCTTGGGATTTTTGCTAAGCATGACCCGGCG
CAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGCGATAGATGATG
GCATGTCGGTTAGGAAGGCTGCTGAGGTCTTTGGGGTAGGTCGTACGTCC
ATCGTAGACCGCCGCCGTGGCAAGGCGGCCATGAACGCGAAGGTTGGTCC
CGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGAATATATTCTGC
TGTTTGCTGCTCGCAACTTCTTGGCTGTGGATCGGGTTTACCTCAGAGAT
GCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGA
GAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCTTCGTAGGCACCTAC
GGGTGGCGGAGCGCTCGACCCGCATCTTCGAGGCAAACATGATCACCGAG
GACGAGGAGCCTCGTATGGTGCAGTTCTACGAGAGATGGGCAGCTCTCCT
CGACGAGGTCAAACCGGAGGCCAACCACGTGCACAATACGGACGAGACAG
AGCCACCGCGTNGACATCGGAGAAAGGGCCCTGAGGCTGCTGAGGGGGCA
AGGGCACACCGTCACGGGAATCCGAGTAGGCACGGTGNGGACTGCAAGGT
GGTTGGTTCGATGCGCTCCAACTCGCGAGAGAACACCACCGTGGTCGCTA
CCATCAGCGCTGATGGTCACACCTGGGCACCAACCATTATCTTCAAGGGG
CAACGACTTCAGGCCGATTGGTTTGTAGAGCGAAACGGCCTAGAAGGTGC
GAAGTACACCTGTACGGATTATTCGTTCATGCAGGGAGACCTATTCATCG
CCTACTTGAAGGATTTCCACAAGCAGCTCTGCGACCGAGGGTTGCTCGAC
GGAAAACCCCACATACTCTTGCTCGATGGACATGCATCACACGTGAGCGT
GGAGGTAATCAAGCTGGCCATGAATCTCAAAATCATCTTGTTCCAGCTAC
CCTCCCACACGTCGCACATCACCCAGCCCTTGGATGTCGTCGCCTTCGGA
AGCTTTAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTCTACCGCAACTC
CGGCGGCTTGTTGCCGCTGAAACGCGACATGCCCGGCGTGATCGCGGATG
CCTGGAAATTGAGCTTTACACCGGAGATAAATAAATCATCATTCGCTGGG
GCGGGCTTGTGGCCTGTGAACAAGGAGCGGGCGCTGGGCCGGCTGAAGGG
CACAGCGACGAAGAAAGAGCGGCGAGACGAGCGCCCACCCCTACAGGATG
TCCCCATCGCCGCCCTCAACGAGCAGCTGGAAAAGACATCGGAGAAAGGG
CCCTGAGGCTGCTGAGGGGGCAAGGGCACACCGTCACGGGAATCCGAGTA
GGCACGGTGTTACTCGGTGGCCTCTTGACTCAAAGGAAGCGCGCGAAGAA
GATGGAGACCTCGCGGGGCTCGCTTGGCCTTCCCGACGGAGGTAACATTA
CCGCGCCTGAGTTCCTGGACGCTGTTGCCGAAAAAGAACGCGAGCGGGGG
GAGGGAGGCGGGGGCCGCGGTATTGGTCGTGGAGACGGGGTGGGAGCGCG
TGGCCGGGGGGGCGGCGCGGCCGGGTGGGGGGGCGCGGCCGGGTGGCTGG
AGCAGAAGGGACGACTTTGTCGGAACGCCAACCAGCGCCCTCCGTGTCCA
GGGTCGGACGACAACGGACGCCGACACCCGTTGTCGAGGTGTAGCCGTAT
GGATATTTCTCACTTGTCCTGACAGGTTCAGATTTGAATCGAACACGCCC
AAATGGTCATGAAGTTGTACCCGCAGTCGATATGCACCCTGTAGAACGTC
GCATGTGGTTCGTAGGCTATGCGACGGTGATTTTAGGGCGTGCCAGCACC
GGGGGGGCAGGATGCACAGGTTTTGAACCCAACCCGAGAATGTCATCGTT
TTGTCCCCGGGTGACCTGTGTGTGTGTGTGTGCGTGTGTGTTCGTTTGCG
TAGATGTTTTTCACATGCTTACAGGTTCCCTCAAATGCGCTGGTCGCGGG
GGTGCAAAGGTGTTTTGAAACTACAGTTTTCGGCGTTAATTCTTACCGTG
GCGGCAAGCCTAAAATCAGGGGAAAAGTATCCTTATTTGACCTTAAATAT
ATCATCAGGTGTGCTCCAATGGTCGTGGAATTGTGCGTGCAGTCGAAACA
TACCCTGTAGAACGTCGTGTGGTTCGTACCCTGTTTGATGGTGACGTTCG
TGCGTTCCAGTACCGGGGGGGGAAGGGATGCACGGGTTTAGACTGAAAAC
CCGGGGACGCGGTGGTCCTTTCCCCGGGGTGGCTTTTTTTTTTTGTTCTG
AACATGTTTCTCACTCGTGTTTAAAGATCCCCTCCAAAGAATGTGTCGTG
GGGATGAATGAGTATTCCTCAATGGTGGATACAGTTTGGCGGTGTTTGGC
GTGAATTCTTACCGTTAGCGGCATGCTAAATCAGGAAAAAGTACCCATAT
TTGACCAAGC

protein sequence of EsuBft1631_7a-0001

>EsuBft1631_7 ID=EsuBft1631_7|Name=EsuBft1631_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MTRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNA
KVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIP
WDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITEDEEPRMVQFYERW
AALLDEVKPEANHVHNTDETEPPRXHRRKGPEAAEGARAHRHGNPSRHGX
DCKVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNG
LEGAKYTCTDYSFMQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHAS
HVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASF
YRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALG
RLKGTATKKERRDERPPLQDVPIAALNEQLEKTSEKGP

mRNA from alignment at Scaffold_265:4138..7520-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1631_7a-0001 ID=EsuBft1631_7a-0001|Name=EsuBft1631_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3383bp|location=Sequence derived from alignment at Scaffold_265:4138..7520- (Ectocarpus subulatus male Bft15b)
TTGCTCCGCGCAACCGGAGCTCTCGTTTGAGCACCACAGCGTCGCACGCC
AAGCATTCTACCCCGAGATACAACCGAGGGAGCCACCACAGCTCCCGCTG
CTAGCCACCTTCATCGTTTTCTTGGGATTTTTGCTAAGCATGACCCGGCG
CAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGCGATAGATGATG
GCATGTCGGTTAGGAAGGCTGCTGAGGTCTTTGGGGTAGGTCGTACGTCC
ATCGTAGACCGCCGCCGTGGCAAGGCGGCCATGAACGCGAAGGTTGGTCC
CGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGAATATATTCTGC
TGTTTGCTGCTCGCAACTTCTTGGCTGTGGATCGGGTTTACCTCAGAGAT
GCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGA
GAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCTTCGTAGGCACCTAC
GGGTGGCGGAGCGCTCGACCCGCATCTTCGAGGCAAACATGATCACCGAG
GACGAGGAGCCTCGTATGGTGCAGTTCTACGAGAGATGGGCAGCTCTCCT
CGACGAGGTCAAACCGGAGGCCAACCACGTGCACAATACGGACGAGACAG
GTGAAGATTCGCTCCTAGACCTGTCTATAACAGTGCAGACTAGCCTACAG
CAGTAGTAGACGTGTGGCAGCAGTCGAAACTGCGCGGGTGACTGCTGTGC
ATAGACCGAAACATGTCACACCGAAATATCAGGCAGAGTTCTGCCCCCTT
GCGGCGTAATTTTGGCCTCCTCATGTACGGCAGCAGTGTAGGCCGTGCTC
CCGCATTCCTGCCCAAAAATGGCGAAATTGCCGCTGGCTCTGGTCTAACG
TAGGCTACAGCAGTAGTTTCAGACACAAGAGTAGAGTACAGCACTGGTTC
CAGACAATATACTGCTGTAGACTATGGTAGTCTAGAATTCAATATTTTCA
TTGCTGCATCGCATCGTCTTCAGCTGGTAGTTCACCTGCGGCGACGAACG
TGTACCTAAGGCGATTTTTAGTAGATGCATTTGCAAACACATGAAAAAAC
TGAACTAGACTAGACTAGTCTACACAGCACCCTGCTTTTGCTCTCCCGGT
TGCCTCGTCCAGCTACCGCCAAAATGACGGTGGACTGCGTAGGTTGAAAG
CCCTCGCCGCACGAAAATAAATGTAAAAGAGCCACCGCGTNGACATCGGA
GAAAGGGCCCTGAGGCTGCTGAGGGGGCAAGGGCACACCGTCACGGGAAT
CCGAGTAGGCACGGTGNGGACTGCGTAGGTTGAAAGCCCTCGCCGCACGA
AAATAAATGTAAAAGAGCCCCCGCGTGTCCCCCCCCCCGTCCACCCCCGT
TGCTTGGGGCGCACGATATTGACTATAAATGTTTGTGTGCATGCGTATAC
TACTGCTGGTAATTTTAACTATCCATTAGACTAGCCTAACGCCCCCCCCC
CCCCCCCCCCCCCCNCAGAAGGTGGTTGGTTCGATGCGCTCCAACTCGCG
AGAGAACACCACCGTGGTCGCTACCATCAGCGCTGATGGTCACACCTGGG
CACCAACCATTATCTTCAAGGGGCAACGACTTCAGGCCGATTGGTTTGTA
GAGCGAAACGGCCTAGAAGGTGCGAAGTACACCTGTACGGATTATTCGTT
CATGCAGGGAGACCTATTCATCGCCTACTTGAAGGATTTCCACAAGCAGC
TCTGCGACCGAGGGTTGCTCGACGGAAAACCCCACATACTCTTGCTCGAT
GGACATGCATCACACGTGAGCGTGGAGGTAATCAAGCTGGCCATGAATCT
CAAAATCATCTTGTTCCAGCTACCCTCCCACACGTCGCACATCACCCAGC
CCTTGGATGTCGTCGCCTTCGGAAGCTTTAAGAAATCGGTGACCAGAGTT
TTGGCGTCCTTCTACCGCAACTCCGGCGGCTTGTTGCCGCTGAAACGCGA
CATGCCCGGCGTGATCGCGGATGCCTGGAAATTGAGCTTTACACCGGAGA
TAAATAAATCATCATTCGCTGGGGCGGGCTTGTGGCCTGTGAACAAGGAG
CGGGCGCTGGGCCGGCTGAAGGGCACAGCGACGAAGAAAGAGCGGCGAGA
CGAGCGCCCACCCCTACAGGATGTCCCCATCGCCGCCCTCAACGAGCAGC
TGGAAAAGACATCGGAGAAAGGGCCCTGAGGCTGCTGAGGGGGCAAGGGC
ACACCGTCACGGGAATCCGAGTAGGCACGGTGTTACTCGGTGGCCTCTTG
ACTCAAAGGAAGCGCGCGAAGAAGATGGAGACCTCGCGGGGCTCGCTTGG
CCTTCCCGACGGAGGTAACATTACCGCGCCTGAGTTCCTGGACGCTGTTG
CCGAAAAAGAACGCGAGCGGGGGGAGGGAGGCGGGGGCCGCGGTATTGGT
CGTGGAGACGGGGTGGGAGCGCGTGGCCGGGGGGGCGGCGCGGCCGGGTG
GGGGGGCGCGGCCGGGTGGCTGGAGCAGAAGGGACGACTTTGTCGGAACG
CCAACCAGCGCCCTCCGTGTCCAGGGTCGGACGACAACGGACGCCGACAC
CCGTTGTCGAGGTGTAGCCGTATGGATATTTCTCACTTGTCCTGACAGGT
TCAGATTTGAATCGAACACGCCCAAATGGTCATGAAGTTGTACCCGCAGT
CGATATGCACCCTGTAGAACGTCGCATGTGGTTCGTAGGCTATGCGACGG
TGATTTTAGGGCGTGCCAGCACCGGGGGGGCAGGATGCACAGGTTTTGAA
CCCAACCCGAGAATGTCATCGTTTTGTCCCCGGGTGACCTGTGTGTGTGT
GTGTGCGTGTGTGTTCGTTTGCGTAGATGTTTTTCACATGCTTACAGGTT
CCCTCAAATGCGCTGGTCGCGGGGGTGCAAAGGTGTTTTGAAACTACAGT
TTTCGGCGTTAATTCTTACCGTGGCGGCAAGCCTAAAATCAGGGGAAAAG
TATCCTTATTTGACCTTAAATATATCATCAGGTGTGCTCCAATGGTCGTG
GAATTGTGCGTGCAGTCGAAACATACCCTGTAGAACGTCGTGTGGTTCGT
ACCCTGTTTGATGGTGACGTTCGTGCGTTCCAGTACCGGGGGGGGAAGGG
ATGCACGGGTTTAGACTGAAAACCCGGGGACGCGGTGGTCCTTTCCCCGG
GGTGGCTTTTTTTTTTTGTTCTGAACATGTTTCTCACTCGTGTTTAAAGA
TCCCCTCCAAAGAATGTGTCGTGGGGATGAATGAGTATTCCTCAATGGTG
GATACAGTTTGGCGGTGTTTGGCGTGAATTCTTACCGTTAGCGGCATGCT
AAATCAGGAAAAAGTACCCATATTTGACCAAGC

Coding sequence (CDS) from alignment at Scaffold_265:4138..7520-

>EsuBft1631_7a-0001 ID=EsuBft1631_7a-0001|Name=EsuBft1631_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_265:4138..7520- (Ectocarpus subulatus male Bft15b)
ATGACCCGGCGCAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGC
GATAGATGATGGCATGTCGGTTAGGAAGGCTGCTGAGGTCTTTGGGGTAG
GTCGTACGTCCATCGTAGACCGCCGCCGTGGCAAGGCGGCCATGAACGCG
AAGGTTGGTCCCGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGA
ATATATTCTGCTGTTTGCTGCTCGCAACTTCTTGGCTGTGGATCGGGTTT
ACCTCAGAGATGCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCT
TGGGATCCAGAGAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCTTCG
TAGGCACCTACGGGTGGCGGAGCGCTCGACCCGCATCTTCGAGGCAAACA
TGATCACCGAGGACGAGGAGCCTCGTATGGTGCAGTTCTACGAGAGATGG
GCAGCTCTCCTCGACGAGGTCAAACCGGAGGCCAACCACGTGCACAATAC
GGACGAGACAGAGCCACCGCGTNGACATCGGAGAAAGGGCCCTGAGGCTG
CTGAGGGGGCAAGGGCACACCGTCACGGGAATCCGAGTAGGCACGGTGNG
GACTGCAAGGTGGTTGGTTCGATGCGCTCCAACTCGCGAGAGAACACCAC
CGTGGTCGCTACCATCAGCGCTGATGGTCACACCTGGGCACCAACCATTA
TCTTCAAGGGGCAACGACTTCAGGCCGATTGGTTTGTAGAGCGAAACGGC
CTAGAAGGTGCGAAGTACACCTGTACGGATTATTCGTTCATGCAGGGAGA
CCTATTCATCGCCTACTTGAAGGATTTCCACAAGCAGCTCTGCGACCGAG
GGTTGCTCGACGGAAAACCCCACATACTCTTGCTCGATGGACATGCATCA
CACGTGAGCGTGGAGGTAATCAAGCTGGCCATGAATCTCAAAATCATCTT
GTTCCAGCTACCCTCCCACACGTCGCACATCACCCAGCCCTTGGATGTCG
TCGCCTTCGGAAGCTTTAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTC
TACCGCAACTCCGGCGGCTTGTTGCCGCTGAAACGCGACATGCCCGGCGT
GATCGCGGATGCCTGGAAATTGAGCTTTACACCGGAGATAAATAAATCAT
CATTCGCTGGGGCGGGCTTGTGGCCTGTGAACAAGGAGCGGGCGCTGGGC
CGGCTGAAGGGCACAGCGACGAAGAAAGAGCGGCGAGACGAGCGCCCACC
CCTACAGGATGTCCCCATCGCCGCCCTCAACGAGCAGCTGGAAAAGACAT
CGGAGAAAGGGCCCTGA