EsuBft1580_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1580_8a-0001
Unique NameEsuBft1580_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:49280..52199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSZ4
ProteomeIdEsuBft1580_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSSF101447
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR029044
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length230
Hectar predicted targeting categorysignal peptide
Evalue3.48e-219
EggNOG OGs2EYNU@1|root,2T04Z@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8aEsuBft1580_8aEctocarpus subulatus male Bft15bgeneScaffold_390 49280..52199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8a-0001EsuBft1580_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 50128..51363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8a-0001-exonEsuBft1580_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 49280..51488 -
EsuBft1580_8a-0001-exonagat-exon-83630Ectocarpus subulatus male Bft15bexonScaffold_390 52105..52199 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8a-0001-exonagat-three_prime_utr-5067Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 49280..50127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8a-0001-cdsEsuBft1580_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 50128..51363 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_8a-0001-exonagat-five_prime_utr-3282Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 51364..51488 -
EsuBft1580_8a-0001-exonagat-five_prime_utr-3283Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 52105..52199 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1580_8a-0001 ID=EsuBft1580_8a-0001|Name=EsuBft1580_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2304bp|location=Sequence derived from alignment at Scaffold_390:49280..52199- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGTCTGTTGTCCCTCTGTCTGCTGCCTCTCTGTTTGTCTGTCGTCTC
CGGAGTATCTGGTTGCTCCTCCTTCGTGAGGTGCTCAATACGCATATAGA
GGGCTGAATCCCCCGCCTCCCCCCGCCGCCAGGGCCGCAACGACAACAAC
AACAACAACGGACGACGCAGCCCCCACAAATATCTCCCACCACATCCTCA
CAACTTCGAGAATTCATCAGATGCGACGAGCGAGACGGAGGTGCTGGTCC
GTCACCCTGGCCCTCCTGCTAACGTACGCCGTCGTCAGCACCGTCCTTTT
CTTGCGGCCTCCGCTCCACCCGGTCGGCCCCTCCACCAAACCCAGCACCA
CCATCTCCGGCAATCAGCGGACACGACAACAACCCAGGCTCCGATCGGCT
TCGGGGGCCGACTCGATCGTCTTCGTTGCCCTGGGTCCCGCGGCGCGGTC
GGCCTCGCTACTGTACGCCCTGACATCGCTTAGAGACGAGGGAGGCTGGG
ACGGCCAGGTGCACGTGATCGTTGAGCGCGAGGATGACCTGGCCTGCCTC
TCGTCGTACCTTCGCCAGTCCGTCACGGCCATCGCTGTCGCACCACCGCC
GCCGCCGCCCTCGACCGGCGGTAGTCTTCATTCCGGTGGCGGGGACACCA
GCGGGGTGGTGCAGAACGCCAAGATGGCGAAGATGAAGCTCCTGGACCTA
CTTCCGCCCTCGGTGGAGCGCGTGGTGTACGTGGACTGCGACGTCATCAC
CCAGCGTCCTCTCGGGCCTTTCCTCGACGCCGTCGCCCGCGAGTGGGACG
AGCTGGACAGAAAAGCGGCAGCGGCAGCGGCAGCGGCAACAGCTGCGGTG
GGAGGGCCAGCGACAACCAGGCCGCCACCGAAAAACGGGGTAGTCAGCCC
ACGCTTGCGAGGAAGGCTTGATGATGGAGACGTGGTATTTGCTCCTCCTC
CTCAGCCGATGAGCGGCGACGGTGACACCAACCGACGGTCGCCGCCGCCG
CCGCCGCCACCGCCGCCGCCGCCGTCAAAAGTGATTATCTTTGCGGACGC
GGGCGGGCACACGGTCCCCGTTTGCCGGGGCTGCGACCGGGCGCACTCGG
GGGTGGTGGCCCTGGCACGTGGGCACTCCGAGCGGTGCCTGAAGCTTTGG
CACGACGCTTTCGAGGGCGACGGCGCGGGAAACGGGGGCACGTCCACGGA
CCAAGAAGCGCTGGACGCGGCGCTCGGGGAGGGGTCGGGATGCGAGGCGA
TTATGATGGGCCGGCGGCACCTCTCGTTCATGAAGGACGCGTTTGTCATG
GCCGGGCTGACGAGGACGAGCACATTCGGCCACTACACGGGGCTGCTTCA
CCCGAAGACCCTGGGCAAGGTCTACCGGAGGTTTTACGAGTGGGCCCTTG
GGATGAGGTTCGAGGAGTGGGGGCAAGGGGAGATCCAGGGCTGCGCGGTC
GAGTGATGATTGAGAGGGAGGGCGGGGGCTGTGGTGGTGTTGTGGGCTGG
TTCTTGTGATTCGGTTGGCTCGATATGTTGGTAAAAGTTGCTCTGTTTGG
TGAGCAGGAGGGCCTCGGAACAGCAATATTATATCGGGAAAGTTGTGGGT
GTTTTAATATGACCGGGGTTGCTAGAAAGACGAAAGATTTCTAGGGCGCT
GAAGTGGGGGTTTCGCATTAGTGGCAGCTAGGATGACCGTGTGACTGTCC
GTTCAATGCTTACACTGTTTCCTATGGAAGGAATGGCACGAACTAGGGGG
AGCTGGGGTGAGGTGGATGGAACAATACCGTACGTAGAGCTAATCGCATT
TGACTGTGTTGAACGGAGTGTAATTATTTGGCTAGAAAAACGGCCGGGAG
AGCTGGCGCCGCCGTATACCCCTCAATAGTTGTTTGGTTTTGCTCGGCTG
CAGATTTGTATGACGTGATTGCTCTCATTATTGAGCCCAGTACAACTTTG
ATCACAGCTTGCTTACAGACGGAAACAAACAAAATGGAAGGGCGGGTTGC
AAGTCCAGTCGTCGGGTATCGATGCGAATGTCTTCTTGTCTTGGCTGTCG
GTGTTGCCCCGACACTAGTGGAAAGGAGAGGTTTGGCTAATAGTTGGTAG
GCGTTCATGCGACGGTTCCCGGGGTTCTCGTCCAGAGCAATCCTCCACTG
GAGAGAATGGGAGACTAGCGATTGAACCTCACGTCATTTCGTATCAGCTC
GATTGGGCTCCTACTATAGTAGGCGCAGGTGTTCGGTTCCGAAGTCCCGA
CAAAAGACTAGGTTCTGCAAAGGAATCTGTAAACACAAAATTGACCAATG
ATTG
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protein sequence of EsuBft1580_8a-0001

>EsuBft1580_8 ID=EsuBft1580_8|Name=EsuBft1580_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=411bp
MRRARRRCWSVTLALLLTYAVVSTVLFLRPPLHPVGPSTKPSTTISGNQR
TRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLRDEGGWDGQVHVI
VEREDDLACLSSYLRQSVTAIAVAPPPPPPSTGGSLHSGGGDTSGVVQNA
KMAKMKLLDLLPPSVERVVYVDCDVITQRPLGPFLDAVAREWDELDRKAA
AAAAAATAAVGGPATTRPPPKNGVVSPRLRGRLDDGDVVFAPPPQPMSGD
GDTNRRSPPPPPPPPPPPSKVIIFADAGGHTVPVCRGCDRAHSGVVALAR
GHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRH
LSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMRFEEW
GQGEIQGCAVE
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mRNA from alignment at Scaffold_390:49280..52199-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1580_8a-0001 ID=EsuBft1580_8a-0001|Name=EsuBft1580_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2920bp|location=Sequence derived from alignment at Scaffold_390:49280..52199- (Ectocarpus subulatus male Bft15b)
GTCTGTCTGTTGTCCCTCTGTCTGCTGCCTCTCTGTTTGTCTGTCGTCTC
CGGAGTATCTGGTTGCTCCTCCTTCGTGAGGTGCTCAATACGCATGTGAG
TGCAGCAGCTTGGTGGGAAAGGCCTGATTTGGTCACCCTGCGACGTATCG
GGTGTGTGTACATCAGCAGCAGAAGTATCACCTGGTCTGTGTTGTATGAT
AGGCGAGAGTCACATGCCTTGGACACAGAAGAAGCTTTTCTCTTTGTCAT
GGTGTGCCGCTGAGCTCGAGCCGGTAAATCTCGGTGATATTCATCGGATG
GGTGTAACCACCCCAGCGCACATCGCATCAAGTGTCAATCTAGTTTACGT
ACATGTAGCTGCTGAATACATTTTGTTTTCGTTCCCTTTGAGACAACAGA
ATAATAAATCCAAACCGGCCATCGGGCAGATGCTCTATCCGAGAACAACT
TATTGCGTCCGCATCTACGTGAGGCGGAGAAGATATGGCGATACGGACGC
GTTCTCCACCAGACGACACAACTGTTGTATCGTCGTAGTGCCCCTTCGTG
GAGCAACTATAATTGTAGGTACTGATGTAGCTGCTGTGAGATACACCGAT
CAACCGACCTCCTTCCATGTTTTGGTGACTGGAGTCCACTTGAAGGTGCT
TGCTGCGTCTGCAAACAAACCTATCTGCCGCGTGTATCCATCCCGCCCGC
CTGCTTAACAGATAGAGGGCTGAATCCCCCGCCTCCCCCCGCCGCCAGGG
CCGCAACGACAACAACAACAACAACGGACGACGCAGCCCCCACAAATATC
TCCCACCACATCCTCACAACTTCGAGAATTCATCAGATGCGACGAGCGAG
ACGGAGGTGCTGGTCCGTCACCCTGGCCCTCCTGCTAACGTACGCCGTCG
TCAGCACCGTCCTTTTCTTGCGGCCTCCGCTCCACCCGGTCGGCCCCTCC
ACCAAACCCAGCACCACCATCTCCGGCAATCAGCGGACACGACAACAACC
CAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGTCTTCGTTGCCCTGG
GTCCCGCGGCGCGGTCGGCCTCGCTACTGTACGCCCTGACATCGCTTAGA
GACGAGGGAGGCTGGGACGGCCAGGTGCACGTGATCGTTGAGCGCGAGGA
TGACCTGGCCTGCCTCTCGTCGTACCTTCGCCAGTCCGTCACGGCCATCG
CTGTCGCACCACCGCCGCCGCCGCCCTCGACCGGCGGTAGTCTTCATTCC
GGTGGCGGGGACACCAGCGGGGTGGTGCAGAACGCCAAGATGGCGAAGAT
GAAGCTCCTGGACCTACTTCCGCCCTCGGTGGAGCGCGTGGTGTACGTGG
ACTGCGACGTCATCACCCAGCGTCCTCTCGGGCCTTTCCTCGACGCCGTC
GCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCAGCGGCAGCGGCAGC
GGCAACAGCTGCGGTGGGAGGGCCAGCGACAACCAGGCCGCCACCGAAAA
ACGGGGTAGTCAGCCCACGCTTGCGAGGAAGGCTTGATGATGGAGACGTG
GTATTTGCTCCTCCTCCTCAGCCGATGAGCGGCGACGGTGACACCAACCG
ACGGTCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGTCAAAAGTGA
TTATCTTTGCGGACGCGGGCGGGCACACGGTCCCCGTTTGCCGGGGCTGC
GACCGGGCGCACTCGGGGGTGGTGGCCCTGGCACGTGGGCACTCCGAGCG
GTGCCTGAAGCTTTGGCACGACGCTTTCGAGGGCGACGGCGCGGGAAACG
GGGGCACGTCCACGGACCAAGAAGCGCTGGACGCGGCGCTCGGGGAGGGG
TCGGGATGCGAGGCGATTATGATGGGCCGGCGGCACCTCTCGTTCATGAA
GGACGCGTTTGTCATGGCCGGGCTGACGAGGACGAGCACATTCGGCCACT
ACACGGGGCTGCTTCACCCGAAGACCCTGGGCAAGGTCTACCGGAGGTTT
TACGAGTGGGCCCTTGGGATGAGGTTCGAGGAGTGGGGGCAAGGGGAGAT
CCAGGGCTGCGCGGTCGAGTGATGATTGAGAGGGAGGGCGGGGGCTGTGG
TGGTGTTGTGGGCTGGTTCTTGTGATTCGGTTGGCTCGATATGTTGGTAA
AAGTTGCTCTGTTTGGTGAGCAGGAGGGCCTCGGAACAGCAATATTATAT
CGGGAAAGTTGTGGGTGTTTTAATATGACCGGGGTTGCTAGAAAGACGAA
AGATTTCTAGGGCGCTGAAGTGGGGGTTTCGCATTAGTGGCAGCTAGGAT
GACCGTGTGACTGTCCGTTCAATGCTTACACTGTTTCCTATGGAAGGAAT
GGCACGAACTAGGGGGAGCTGGGGTGAGGTGGATGGAACAATACCGTACG
TAGAGCTAATCGCATTTGACTGTGTTGAACGGAGTGTAATTATTTGGCTA
GAAAAACGGCCGGGAGAGCTGGCGCCGCCGTATACCCCTCAATAGTTGTT
TGGTTTTGCTCGGCTGCAGATTTGTATGACGTGATTGCTCTCATTATTGA
GCCCAGTACAACTTTGATCACAGCTTGCTTACAGACGGAAACAAACAAAA
TGGAAGGGCGGGTTGCAAGTCCAGTCGTCGGGTATCGATGCGAATGTCTT
CTTGTCTTGGCTGTCGGTGTTGCCCCGACACTAGTGGAAAGGAGAGGTTT
GGCTAATAGTTGGTAGGCGTTCATGCGACGGTTCCCGGGGTTCTCGTCCA
GAGCAATCCTCCACTGGAGAGAATGGGAGACTAGCGATTGAACCTCACGT
CATTTCGTATCAGCTCGATTGGGCTCCTACTATAGTAGGCGCAGGTGTTC
GGTTCCGAAGTCCCGACAAAAGACTAGGTTCTGCAAAGGAATCTGTAAAC
ACAAAATTGACCAATGATTG
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Coding sequence (CDS) from alignment at Scaffold_390:49280..52199-

>EsuBft1580_8a-0001 ID=EsuBft1580_8a-0001|Name=EsuBft1580_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1236bp|location=Sequence derived from alignment at Scaffold_390:49280..52199- (Ectocarpus subulatus male Bft15b)
ATGCGACGAGCGAGACGGAGGTGCTGGTCCGTCACCCTGGCCCTCCTGCT
AACGTACGCCGTCGTCAGCACCGTCCTTTTCTTGCGGCCTCCGCTCCACC
CGGTCGGCCCCTCCACCAAACCCAGCACCACCATCTCCGGCAATCAGCGG
ACACGACAACAACCCAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGT
CTTCGTTGCCCTGGGTCCCGCGGCGCGGTCGGCCTCGCTACTGTACGCCC
TGACATCGCTTAGAGACGAGGGAGGCTGGGACGGCCAGGTGCACGTGATC
GTTGAGCGCGAGGATGACCTGGCCTGCCTCTCGTCGTACCTTCGCCAGTC
CGTCACGGCCATCGCTGTCGCACCACCGCCGCCGCCGCCCTCGACCGGCG
GTAGTCTTCATTCCGGTGGCGGGGACACCAGCGGGGTGGTGCAGAACGCC
AAGATGGCGAAGATGAAGCTCCTGGACCTACTTCCGCCCTCGGTGGAGCG
CGTGGTGTACGTGGACTGCGACGTCATCACCCAGCGTCCTCTCGGGCCTT
TCCTCGACGCCGTCGCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCA
GCGGCAGCGGCAGCGGCAACAGCTGCGGTGGGAGGGCCAGCGACAACCAG
GCCGCCACCGAAAAACGGGGTAGTCAGCCCACGCTTGCGAGGAAGGCTTG
ATGATGGAGACGTGGTATTTGCTCCTCCTCCTCAGCCGATGAGCGGCGAC
GGTGACACCAACCGACGGTCGCCGCCGCCGCCGCCGCCACCGCCGCCGCC
GCCGTCAAAAGTGATTATCTTTGCGGACGCGGGCGGGCACACGGTCCCCG
TTTGCCGGGGCTGCGACCGGGCGCACTCGGGGGTGGTGGCCCTGGCACGT
GGGCACTCCGAGCGGTGCCTGAAGCTTTGGCACGACGCTTTCGAGGGCGA
CGGCGCGGGAAACGGGGGCACGTCCACGGACCAAGAAGCGCTGGACGCGG
CGCTCGGGGAGGGGTCGGGATGCGAGGCGATTATGATGGGCCGGCGGCAC
CTCTCGTTCATGAAGGACGCGTTTGTCATGGCCGGGCTGACGAGGACGAG
CACATTCGGCCACTACACGGGGCTGCTTCACCCGAAGACCCTGGGCAAGG
TCTACCGGAGGTTTTACGAGTGGGCCCTTGGGATGAGGTTCGAGGAGTGG
GGGCAAGGGGAGATCCAGGGCTGCGCGGTCGAGTGA
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