EsuBft1545_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1545_2a-0001
Unique NameEsuBft1545_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:143291..143772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJ59
ProteomeIdEsuBft1545_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length48
Hectar predicted targeting categoryother localisation
Evalue1.89e-11
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameMCA5
Descriptioncysteine-type peptidase activity
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2aEsuBft1545_2aEctocarpus subulatus male Bft15bgeneScaffold_284 143291..143772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2a-0001-exonEsuBft1545_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 143291..143772 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2a-0001-exonagat-three_prime_utr-4768Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_284 143291..143552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2a-0001-cdsEsuBft1545_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 143553..143771 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2a-0001-exonagat-five_prime_utr-3095Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_284 143772..143772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1545_2a-0001EsuBft1545_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 143553..143771 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1545_2a-0001 ID=EsuBft1545_2a-0001|Name=EsuBft1545_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=482bp|location=Sequence derived from alignment at Scaffold_284:143291..143772- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACG
TTTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACG
AACGCCATGCTCCTTACAGCGATGAAGCAAGAAAGAAGAAGCGACGATGG
GATGGTAGGTGGGCGTTGCTGGTGCTGCTGCTGTACTCACAGACGGGAAT
CATTTGGGTGTCGCGTTTGATCGAGGTCTGGCCTCGAGTGCTGAGCGTAT
CCTGACTGCTATACTTCGAGTTGGGCTAGCTCTGCTGCTGCCACAACAAC
GGTGTGCGCTCGGTGCTTTTCGGTGTGCAGACTCTTCCGCCTGCCTGACT
ATTCCCCACCAAGATACTGTTGCGTATTTGGCTCTGTCTCTTGCGCCAAT
GCTGATCCTTTGGTGCTACTCGTGTGTTCGGTTGGCGTTCACACCACCCC
TCCCTGCCAGAGTGACGACCACTCCGACTCGT
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protein sequence of EsuBft1545_2a-0001

>EsuBft1545_2 ID=EsuBft1545_2|Name=EsuBft1545_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MFSGCMDSQTSADVKDVSKFGLPDADGAGGACTNAMLLTAMKQERRSDDG
MVGGRCWCCCCTHRRESFGCRV
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mRNA from alignment at Scaffold_284:143291..143772-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1545_2a-0001 ID=EsuBft1545_2a-0001|Name=EsuBft1545_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=482bp|location=Sequence derived from alignment at Scaffold_284:143291..143772- (Ectocarpus subulatus male Bft15b)
TATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACG
TTTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACG
AACGCCATGCTCCTTACAGCGATGAAGCAAGAAAGAAGAAGCGACGATGG
GATGGTAGGTGGGCGTTGCTGGTGCTGCTGCTGTACTCACAGACGGGAAT
CATTTGGGTGTCGCGTTTGATCGAGGTCTGGCCTCGAGTGCTGAGCGTAT
CCTGACTGCTATACTTCGAGTTGGGCTAGCTCTGCTGCTGCCACAACAAC
GGTGTGCGCTCGGTGCTTTTCGGTGTGCAGACTCTTCCGCCTGCCTGACT
ATTCCCCACCAAGATACTGTTGCGTATTTGGCTCTGTCTCTTGCGCCAAT
GCTGATCCTTTGGTGCTACTCGTGTGTTCGGTTGGCGTTCACACCACCCC
TCCCTGCCAGAGTGACGACCACTCCGACTCGT
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Coding sequence (CDS) from alignment at Scaffold_284:143291..143772-

>EsuBft1545_2a-0001 ID=EsuBft1545_2a-0001|Name=EsuBft1545_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_284:143291..143772- (Ectocarpus subulatus male Bft15b)
ATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACGT
TTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACGA
ACGCCATGCTCCTTACAGCGATGAAGCAAGAAAGAAGAAGCGACGATGGG
ATGGTAGGTGGGCGTTGCTGGTGCTGCTGCTGTACTCACAGACGGGAATC
ATTTGGGTGTCGCGTTTGA
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