EsuBft151_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft151_7a-0001
Unique Name	EsuBft151_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:165401..167170 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft151_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	157
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft151_7a	EsuBft151_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 165401..167170 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_7a-0001-exon	EsuBft151_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 165401..166696 -
EsuBft151_7a-0001-exon	agat-exon-79030	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 166893..167170 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_7a-0001-exon	agat-three_prime_utr-4566	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 165401..166696 -
EsuBft151_7a-0001-exon	agat-three_prime_utr-4567	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 166893..166984 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_7a-0001-cds	EsuBft151_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 166985..167170 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_7a-0001	EsuBft151_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 166985..167170 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:165401..167170-
coding sequence from alignment at Scaffold_392:165401..167170-

spliced messenger RNA

>EsuBft151_7a-0001 ID=EsuBft151_7a-0001|Name=EsuBft151_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1574bp|location=Sequence derived from alignment at Scaffold_392:165401..167170- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACTTCAACTTCCTGCCGCCCAACGCCTCTTCTCTTCCCGGGCGG
CACCGCGGGCGTTAACAACGGAGCGCGGCGCGGGGCTACTGGTGGTCTGA
GAAGGATGTGCGCGACAATCAAGCTCGTTGAAATGATAAGGGCTGGGATG
GTGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTCTGAGTTTTTGTTTGCTC
CCGGCCGGCTTTCGGGCCAGGATTCGATAGATCGGGTGTTCGACAGCAGT
ACCTGGTAGTTACTTGCCCTCCGGCCAGGTGGAATCTGTTGGGTTGTATG
ATGTTTCCAAGCACCACTCACTTCGTCTCGCACGGTTGTCTTTCCGTCTT
TTCTGGTTTAGCACAGCTTAAGCAGCGCTGGTGTCGACATTTCTGGGTCC
TGATTTTGTTTCGTTACTTCTCTTTGATTTTTCACAACCACGTGTCTGCG
TGCCCGTCTTCGGTTAGCCTATGCATGACCACCATCGGGAAGGCGTCCGC
GTCAGTAATAAAAAATAGGAGGCACTTCTAAAGCAAGCAGCAATCGGCGA
TTTTTTATTTGTTGTGAAAGAGAGCAGCCGAGTGCGCGTCGGGCGACCCG
ACGCAGCATGAGTGAAAACAATTGCATCGACGTTATGCCAGGTGCTGCTG
TGGGAGCGTCGCGTTTTCGCATCCCCGTTGCTCACCTCGGTAGGAGCACC
CCCACCAACAGCAGCAACCGCATCAGCACCAGAGCCGCCTGCTGGCCTTC
CGTTCGCCCGCTTCCCTCCTCCCCCTCCTCCTCCTCCTCTTCCTCCGCCC
CCCCTGCCGCCGCCTGCGGCACCAGGTCTTGACGGACTAGAAACGTTTCC
GTTTCCGTTCGCATTGGAAGCGATTCTTTTTCCGATCGGGCTCAGGCTCA
GGTCTGGGGCCGTTCTGGGGCGCTGCCGTCTGGTGGCACCCCTGCTTCCT
TCTCGGGCAGGCATCTCCACGAGCTGATCTCCACAGCACTCGCTGAGATA
GTTTGTAATCCACCCGCGCGCGCGGCCCGCGTTCCTCGTTTAAAAAAAAC
TCCGGCTATACAGCCCGCAGAAGGAGTTGCTCTTGTCTGACTCCCGCACA
CGAAACGGAGACTGCTGTCCTTTACAACGCGGGTGCGACGCCCCGGTGGT
GGTGGGTGCTATCGCTCGTCGTGACCCCCTCCCCCCGAACGAAACGGAGC
AGGGGAAATTGTTTTGTTCCGAGAAAAGAGACGCTCTCGGCTATGTGCCT
CTTGTTATTTTAGTTGGTGAGGACGGCAAGTGTTTTTTTGCCTGCGCTCC
CCCTGTGCTCAGCGACAGCCCACGCAAGCAAGTCACCACCAGGAATGGCA
AATCAGCTCAGCAGCCCTCAGCTTAGAGAGAACGGTATGACTCCATGGTC
ATCTTCGTGTAAACACGAACAGACCAACAGAACCCGGTGTCTTCTTGACG
TTGCCCCAACACCTGGTGCCCGCTGCTGCTGCTTCCGCTGGGTCCAGAAA
GAAGTTGTCGATAATTTTTTTCAGACGGAGAAATGGAACACAACCCCCCC
TCTTTGCTCCGTCGCAGCTTTCTC

protein sequence of EsuBft151_7a-0001

>EsuBft151_7 ID=EsuBft151_7|Name=EsuBft151_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MITSTSCRPTPLLFPGGTAGVNNGARRGATGGLRRMCATIKLVEMIRAGM
VAAAAAAVVVV

mRNA from alignment at Scaffold_392:165401..167170-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft151_7a-0001 ID=EsuBft151_7a-0001|Name=EsuBft151_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_392:165401..167170- (Ectocarpus subulatus male Bft15b)
ATGATCACTTCAACTTCCTGCCGCCCAACGCCTCTTCTCTTCCCGGGCGG
CACCGCGGGCGTTAACAACGGAGCGCGGCGCGGGGCTACTGGTGGTCTGA
GAAGGATGTGCGCGACAATCAAGCTCGTTGAAATGATAAGGGCTGGGATG
GTGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTCTGAGTTTTTGTTTGCTC
CCGGCCGGCTTTCGGGCCAGGATTCGATAGATCGGGTGTTCGACAGCAGT
ACCTGGTAGTTACTTGCCCTCCGGCCAGGTTCGTGGTCGGGCGGTCGAAC
GTAGTGTAGTGGTGTACCCCAAGTCAAACAAACACCACAACCTTCTGTGG
GACACACGCATATGGGCACGACACTACTGCTGCTGCTGTACGGGGGGGAA
TAGGCAGCGGACATGCAGCATCGCGGTTGCCTACAACGTGTGCATGTCTC
GGGAGTTTTAGCAAAAAACAACAGGTGGAATCTGTTGGGTTGTATGATGT
TTCCAAGCACCACTCACTTCGTCTCGCACGGTTGTCTTTCCGTCTTTTCT
GGTTTAGCACAGCTTAAGCAGCGCTGGTGTCGACATTTCTGGGTCCTGAT
TTTGTTTCGTTACTTCTCTTTGATTTTTCACAACCACGTGTCTGCGTGCC
CGTCTTCGGTTAGCCTATGCATGACCACCATCGGGAAGGCGTCCGCGTCA
GTAATAAAAAATAGGAGGCACTTCTAAAGCAAGCAGCAATCGGCGATTTT
TTATTTGTTGTGAAAGAGAGCAGCCGAGTGCGCGTCGGGCGACCCGACGC
AGCATGAGTGAAAACAATTGCATCGACGTTATGCCAGGTGCTGCTGTGGG
AGCGTCGCGTTTTCGCATCCCCGTTGCTCACCTCGGTAGGAGCACCCCCA
CCAACAGCAGCAACCGCATCAGCACCAGAGCCGCCTGCTGGCCTTCCGTT
CGCCCGCTTCCCTCCTCCCCCTCCTCCTCCTCCTCTTCCTCCGCCCCCCC
TGCCGCCGCCTGCGGCACCAGGTCTTGACGGACTAGAAACGTTTCCGTTT
CCGTTCGCATTGGAAGCGATTCTTTTTCCGATCGGGCTCAGGCTCAGGTC
TGGGGCCGTTCTGGGGCGCTGCCGTCTGGTGGCACCCCTGCTTCCTTCTC
GGGCAGGCATCTCCACGAGCTGATCTCCACAGCACTCGCTGAGATAGTTT
GTAATCCACCCGCGCGCGCGGCCCGCGTTCCTCGTTTAAAAAAAACTCCG
GCTATACAGCCCGCAGAAGGAGTTGCTCTTGTCTGACTCCCGCACACGAA
ACGGAGACTGCTGTCCTTTACAACGCGGGTGCGACGCCCCGGTGGTGGTG
GGTGCTATCGCTCGTCGTGACCCCCTCCCCCCGAACGAAACGGAGCAGGG
GAAATTGTTTTGTTCCGAGAAAAGAGACGCTCTCGGCTATGTGCCTCTTG
TTATTTTAGTTGGTGAGGACGGCAAGTGTTTTTTTGCCTGCGCTCCCCCT
GTGCTCAGCGACAGCCCACGCAAGCAAGTCACCACCAGGAATGGCAAATC
AGCTCAGCAGCCCTCAGCTTAGAGAGAACGGTATGACTCCATGGTCATCT
TCGTGTAAACACGAACAGACCAACAGAACCCGGTGTCTTCTTGACGTTGC
CCCAACACCTGGTGCCCGCTGCTGCTGCTTCCGCTGGGTCCAGAAAGAAG
TTGTCGATAATTTTTTTCAGACGGAGAAATGGAACACAACCCCCCCTCTT
TGCTCCGTCGCAGCTTTCTC

Coding sequence (CDS) from alignment at Scaffold_392:165401..167170-

>EsuBft151_7a-0001 ID=EsuBft151_7a-0001|Name=EsuBft151_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_392:165401..167170- (Ectocarpus subulatus male Bft15b)
ATGATCACTTCAACTTCCTGCCGCCCAACGCCTCTTCTCTTCCCGGGCGG
CACCGCGGGCGTTAACAACGGAGCGCGGCGCGGGGCTACTGGTGGTCTGA
GAAGGATGTGCGCGACAATCAAGCTCGTTGAAATGATAAGGGCTGGGATG
GTGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTCTGA