EsuBft1515_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1515_4a-0001
Unique NameEsuBft1515_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:170766..171256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1515_4
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_4aEsuBft1515_4aEctocarpus subulatus male Bft15bgeneScaffold_228 170766..171256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_4a-0001-exonEsuBft1515_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 170766..171040 -
EsuBft1515_4a-0001-exonagat-exon-19782Ectocarpus subulatus male Bft15bexonScaffold_228 171126..171256 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_4a-0001-exonagat-three_prime_utr-4528Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 170766..170973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_4a-0001-cdsEsuBft1515_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 170974..171040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_4a-0001EsuBft1515_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 170974..171256 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1515_4a-0001 ID=EsuBft1515_4a-0001|Name=EsuBft1515_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=406bp|location=Sequence derived from alignment at Scaffold_228:170766..171256- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTACGGAGCACAAGTCAAAAGGACATGTGCAGAAGACGCACTTC
AAGTGCAAAGGAGCTCACTGTCGCTCCGTCGGTGCACGCAACTCCCAGAT
CATACACAGAGTCCGGACCCATAAGAGAAGGGCTCTCTCTGAAGAGATGC
AATCTCAAAACTACCGACACGAAAGAATCATATTTGGAAATGCTCTGAAG
CCAAATGAACACCATTATTAGGACGGCGCGAAAAGAAATACGGGCAGCCC
TCCCTCCTGTTCGTTGGTATCCTCTTCCTCCTCCTGCTGTTGTTGTTCGA
GCTTGTCCACTGCTTCTCCTCCGTCGTCGGGATGATCCTCGATGGCGTCC
TCGTCCTACCCCTCGTCCTCTTGTTGTTCGGGGTCGTCTCCGTCGTAATT
CGTCGT
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protein sequence of EsuBft1515_4a-0001

>EsuBft1515_4 ID=EsuBft1515_4|Name=EsuBft1515_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MMVRSTSQKDMCRRRTSSAKELTVAPSVHATPRSYTESGPIREGLSLKRC
NLKTTDTKESYLEML
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mRNA from alignment at Scaffold_228:170766..171256-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1515_4a-0001 ID=EsuBft1515_4a-0001|Name=EsuBft1515_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=491bp|location=Sequence derived from alignment at Scaffold_228:170766..171256- (Ectocarpus subulatus male Bft15b)
ATGATGGTACGGAGCACAAGTCAAAAGGACATGTGCAGAAGACGCACTTC
AAGTGCAAAGGAGCTCACTGTCGCTCCGTCGGTGCACGCAACTCCCAGAT
CATACACAGAGTCCGGACCCATAAGAGAAGGGTAAGTCCCCCACGCGCAT
GACACCACCTACGATGTCGAATCGAACGAAATTCACTCAACATTTCCACT
CATACCAAACCCGCAGGCTCTCTCTGAAGAGATGCAATCTCAAAACTACC
GACACGAAAGAATCATATTTGGAAATGCTCTGAAGCCAAATGAACACCAT
TATTAGGACGGCGCGAAAAGAAATACGGGCAGCCCTCCCTCCTGTTCGTT
GGTATCCTCTTCCTCCTCCTGCTGTTGTTGTTCGAGCTTGTCCACTGCTT
CTCCTCCGTCGTCGGGATGATCCTCGATGGCGTCCTCGTCCTACCCCTCG
TCCTCTTGTTGTTCGGGGTCGTCTCCGTCGTAATTCGTCGT
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Coding sequence (CDS) from alignment at Scaffold_228:170766..171256-

>EsuBft1515_4a-0001 ID=EsuBft1515_4a-0001|Name=EsuBft1515_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_228:170766..171256- (Ectocarpus subulatus male Bft15b)
ATGATGGTACGGAGCACAAGTCAAAAGGACATGTGCAGAAGACGCACTTC
AAGTGCAAAGGAGCTCACTGTCGCTCCGTCGGTGCACGCAACTCCCAGAT
CATACACAGAGTCCGGACCCATAAGAGAAGGGCTCTCTCTGAAGAGATGC
AATCTCAAAACTACCGACACGAAAGAATCATATTTGGAAATGCTCTGA
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