EsuBft1515_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1515_3a-0001
Unique NameEsuBft1515_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:164505..167051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1515_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length34
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_3aEsuBft1515_3aEctocarpus subulatus male Bft15bgeneScaffold_228 164505..167051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_3a-0001-exonagat-exon-19781Ectocarpus subulatus male Bft15bexonScaffold_228 164505..164627 +
EsuBft1515_3a-0001-exonEsuBft1515_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 166830..167051 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_3a-0001-exonagat-five_prime_utr-2950Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 164505..164627 +
EsuBft1515_3a-0001-exonagat-five_prime_utr-2951Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 166830..166883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_3a-0001-cdsEsuBft1515_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 166884..167051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_3a-0001EsuBft1515_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 166884..167051 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=345bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGAACTCACCAACGTTGGTCCTACAGCAGTAGTGTACCTGGTGAATACG
GTCACGGATAGCCGGATGGCTCATCTAGGCCGAACGTAATACCAACTAAG
GAGGCTAGCGCACGGTGGAGCAGCGCTGGGGGTCCGCCTTTTCCTGCGGC
GTTCACGGGAACAAATTGAGGAGGGAGATGAGACCACAATTCGGGCGGAT
ATTGGATTCTCTTTTGACGAAGCTGGCGGGGAAGAGCCCGCCGGGGGAGA
TGGGGGGCACGATGAACAAACACCCGGAGATGGCGGCCGAGAGACCACAC
CGGATGGCGAGGAGGAAACTCGCACTCAGGAGAGGGGGGGGGTGA
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protein sequence of EsuBft1515_3a-0001

>EsuBft1515_3 ID=EsuBft1515_3|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MRPQFGRILDSLLTKLAGKSPPGEMGGTMNKHPEMAAERPHRMARRKLAL
RRGGG
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mRNA from alignment at Scaffold_228:164505..167051+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2547bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)
TCGAACTCACCAACGTTGGTCCTACAGCAGTAGTGTACCTGGTGAATACG
GTCACGGATAGCCGGATGGCTCATCTAGGCCGAACGTAATACCAACTAAG
GAGGCTAGCGCACGGTGGAGCAGGTGTGTGAGTACCCATTGACAGTGCTT
TGGGGTGAAAGTGTCTACGGTTTCACTATAATCTGGCCATCTAAAGTGTG
GCCTTCAAAGGACACGTCATGGTTGAACTTGGCCGGTGCGCTGCACGAAG
ACACTCTGCCTCTGAGATCAAGCTGCTCGCCTGTGCCCCTCTCTGCGAAG
GGGGGAGTCTTCGTGGTCGAAGCCAACGCTTGGCTACCGGAGCTATTGCT
GCTGTAGCGATGCAAGGTAGGCAGAGCAGTTTGGAGCGTGTGTGTCGGCG
CCAACATGCTTCTATGCGGTGTTCTGTGTGTACCAGTTGGTGACACCAGA
TTCCGCACCCCCTGCACCGATGTTCAAAGCTCGAGTACTCCACCACGAAA
AGGATGGAACATTGTACATAAAACCAGTGATACATCTTCAGAAAGCTCTC
GGCGAGCCGTTTCAGCGCCGCCATTTTCGGCGCCATCATGTTTTGCTTTA
GGAATATTCGGGTTTCGAAATTTAGTCCAGGGGGTGTGATATCTTGTGCA
ATCAATAGCACACATTGTATACGATGTACGCGACCACAAGAAGAGTTGTT
AGCGCCCCCTGCCTGCGGACGGAATGGGTTTTCGCACTCAAGAACGAAGT
GGATCTGGTGTAGAAGGGTCGGCCTATGTTGCAGTTTGGTTTTGCAACAG
CACTGTACAAGACCGCGCGTCTGTTTTTTTCTTTTTTTTTAATTTGAGAC
ACTCCACGTTGACCCCTTGGGTGCACGGAGTTCGCATGTTCACCGCCCAC
TCACAGCAATAATGGCAGAGTAGGTCTTGCCCTNGTCTTCAGAAAGCTCT
CGGCGAGCCGTTTCCAGCGCCGCCATTTTCGGCGCCATCATGTTGTTTTG
CTTAAGGAATATTCGGGTTTCGAAATTTGGTCCAGGGGGTGTGATATCTT
GTGCAATCAATGGCACACATTGTATACGATGTACGCGACCACAAGAAGAG
TTGTTAGCGCCCCCTGCCTGCGGACGGAATGGGTTTTCGCACTCAAGAAC
GAAGTGGATCTGGTGTAGAAGGGTCGGCCTATGTTGCAGTTTGGTTTTGC
AACAGCACTGTACAAGGCCGCGCGTCTGTTTTTTTCTTTTTTTTTGAGTT
TGAGACACTCCACGTTGACCCCTTGGGTGCACGGAGTTTGCATGTTCACC
GCCCACTCACAGCAATAATGGCAGAGTAGGTCTTGCCCTTGCTTGCTCAA
GTCTAGTACGGCAGTTGACAACGGAAAAAAATGAAACACGGTAGGTGCAA
TGCGTTGTGTATCCAGCAGACGGAAAGGTGTGGGTGTGCATTAGACACCA
AACTTCCCCTTCCCAGTTGTTTGTTCGGCATTGAACCACATGCTCCACCG
TTCACGCCAACCTGCGCGATGTCCTAACCTAGCCATTAAAATTTGTATCT
TAATGTTGGTGTTGTGCAGCATCCCGGTACGTGGTACAGTAGAGGTCCCT
ATTTAGTGCCGGGATGTGCGCCGAAATTTCACCGGCCTTAACTGGACACC
GGCACTATTTTATTATTTATTTATTTATTTTTGCCTTCCGACAATTGCAG
ATGTACCTCAGAAAACTTTCACTTAATGTCTCATACTCTACATGAATATT
CTAAGTACAGAACGACTTGGTTTTCCAGTGTGTGAGCCGAAAACACCGGG
CACTGTAACGGCAACCGTCACTTTTCAACCGGCACTAAACCGGGACCCCT
ACTGTATTGGTGGGTGTGATACGAGTTTGTTGCTGTAGCTGCAGTGAATC
CCCACCCCCTCACCCTTGTCAAGGAGCTCGCATCGATTGGCCCTGGTCGN
AGCCGAAAACACCGGGCACTGTAACGGCAACCGTCACTTTTCAACCGTCA
CTAAACCGGGACCCCTACTGTATTGGTGGGTGTGATAGGAGTTTGTTGCT
GTAGCTGCAGTGAATCCCCACCCCCTCACCCTTGTCAAGGAGCTCGCATC
GATTGGCCCTGGTCGGAAGGCACGCCACCAGCACCACCGGGGTGGTCGTT
CTGTGTGAATTATTGTTACCCGGCGGAGCCGACAGACTACGTGCGCATCC
GCGTTGCAACATCCTCCCATGGTCACAGTAGGCGATGTCAAAAATACGCA
AGCATTTTTCGATACTTTTTCATCGACGACACCCCGTCCTCGTCTGAAAC
TTCGTATGGTTCACGGACCGAGCAGCGCTGGGGGTCCGCCTTTTCCTGCG
GCGTTCACGGGAACAAATTGAGGAGGGAGATGAGACCACAATTCGGGCGG
ATATTGGATTCTCTTTTGACGAAGCTGGCGGGGAAGAGCCCGCCGGGGGA
GATGGGGGGCACGATGAACAAACACCCGGAGATGGCGGCCGAGAGACCAC
ACCGGATGGCGAGGAGGAAACTCGCACTCAGGAGAGGGGGGGGGTGA
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Coding sequence (CDS) from alignment at Scaffold_228:164505..167051+

>EsuBft1515_3a-0001 ID=EsuBft1515_3a-0001|Name=EsuBft1515_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_228:164505..167051+ (Ectocarpus subulatus male Bft15b)
ATGAGACCACAATTCGGGCGGATATTGGATTCTCTTTTGACGAAGCTGGC
GGGGAAGAGCCCGCCGGGGGAGATGGGGGGCACGATGAACAAACACCCGG
AGATGGCGGCCGAGAGACCACACCGGATGGCGAGGAGGAAACTCGCACTC
AGGAGAGGGGGGGGGTGA
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