EsuBft1507_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1507_4a-0001
Unique NameEsuBft1507_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:293712..298686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0N3
ProteomeIdEsuBft1507_4
Protein domainsIPR008266
Protein domainsTMhelix
Protein domainsIPR000719
Protein domainsSIGNAL_PEPTIDE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsG3DSA
Protein domainsIPR011009
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsPTHR24349
Ownerapollo_admin@sb-roscoff.fr
Notecbl-interacting serine threonine-protein kinase 15 os:arabidopsis thaliana gn:cipk15 pe:1 sv:2 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length977
Hectar predicted targeting categoryother localisation
Evalue1.4e-192
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-14_001640.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
EC2.8.1.8
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005524
GO0006468
GO0044464
GO0007165
GO0004672
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1507_4aEsuBft1507_4aEctocarpus subulatus male Bft15bgeneScaffold_284 293712..298686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1507_4a-0001EsuBft1507_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 293712..298663 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1507_4a-0001-exonagat-exon-585Ectocarpus subulatus male Bft15bexonScaffold_284 293712..293850 -
EsuBft1507_4a-0001-exonagat-exon-581Ectocarpus subulatus male Bft15bexonScaffold_284 294448..294514 -
EsuBft1507_4a-0001-exonagat-exon-583Ectocarpus subulatus male Bft15bexonScaffold_284 294974..295155 -
EsuBft1507_4a-0001-exonagat-exon-584Ectocarpus subulatus male Bft15bexonScaffold_284 295559..295755 -
EsuBft1507_4a-0001-exonEsuBft1507_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 296655..296783 -
EsuBft1507_4a-0001-exonagat-exon-582Ectocarpus subulatus male Bft15bexonScaffold_284 298424..298686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1507_4a-0001-cdsEsuBft1507_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 293712..293850 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1507_4a-0001-exonagat-five_prime_utr-2913Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_284 298664..298686 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1507_4a-0001 ID=EsuBft1507_4a-0001|Name=EsuBft1507_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=977bp|location=Sequence derived from alignment at Scaffold_284:293712..298686- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAGCGCCGACACCACTGTCACATGTGCTCCACAATGGCAATGATGTCG
AGCTTCTCCCAAGCCCAGTTCAAAGTTGCCAGACGTCTGTTCCCGAGCCC
GTTCTGCACGGCACTAGGAGCAGGAGGAGGGGGGGGGGGCTTCATGATCG
CCAGCACATCAAGCGAACTGCAGTTGCACGTGATTGACAGGATTCGAGGT
TGCCTGTACGGGGAGGTGCTTCGAGCTATGGAGGTTTCGCGCGGAGGTTT
CTATGCTATCAAGCAAATGAGCCTCGAGAGGATATCAAGCATGGCTGGAC
GTCATTCTTGTGAAGATCCGCTGCACGAGGTTGCCATTCTCCAGTTTTTG
AAAGCTCATGGATCGCACCCGAACGTCATCGAAGTTGTCGAGGTGCTCCG
AGACGAAGAGTACATCTATGTCGTCCTGCCGTTCTGCGACGGGGGGGAGC
TGTATAGCCGAGTGTCCCACCCTAGCACAGGGCTAGGGCCGGCCGCCAGC
ACCGGGTTGAACGAGGACGTCGCGCGGCCGATTATTCGTGGCCTGCTTGC
CGGCATGGCCTTCTTGCACGGGCACCAGATATGCCACAGGGACGTGAGCC
TCGAGAACATCGTCCTGACCGTGTCCGGTGAGGTCAAGATCATCGACTTC
GGCTTGGCGCTCAGGTCCGGACAGCACCGGCCGCAAGGCCGCACGGCCCA
ATTCGACGGTGACAACCAGCTCGACGTGCGCAGCATCTCGCCTACGGGGC
ATTTCGGGAAGAAGAACTACACGATGAACGAGGAGGACTACAATGGGTTC
GCTGTGGACGTCTGGGCTCTGGGGGTCGTCATATTTATCACGCTCGCAGG
GATCCCTCCCTTCCACATCCCGATCCCCGCACGGGACCACCGCTGCCACA
CCATCGCCGTCGAGCGCGGCTTGTTGGAGGTCGTCAGGCGGTGGGGGCTA
ACAATGTCCGACGAGGTGGGCGTGTAG
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protein sequence of EsuBft1507_4a-0001

>EsuBft1507_4 ID=EsuBft1507_4|Name=EsuBft1507_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MCSTMAMMSSFSQAQFKVARRLFPSPFCTALGAGGGGGGFMIASTSSELQ
LHVIDRIRGCLYGEVLRAMEVSRGGFYAIKQMSLERISSMAGRHSCEDPL
HEVAILQFLKAHGSHPNVIEVVEVLRDEEYIYVVLPFCDGGELYSRVSHP
STGLGPAASTGLNEDVARPIIRGLLAGMAFLHGHQICHRDVSLENIVLTV
SGEVKIIDFGLALRSGQHRPQGRTAQFDGDNQLDVRSISPTGHFGKKNYT
MNEEDYNGFAVDVWALGVVIFITLAGIPPFHIPIPARDHRCHTIAVERGL
LEVVRRWGLTMSDEVGV
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mRNA from alignment at Scaffold_284:293712..298686-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1507_4a-0001 ID=EsuBft1507_4a-0001|Name=EsuBft1507_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4975bp|location=Sequence derived from alignment at Scaffold_284:293712..298686- (Ectocarpus subulatus male Bft15b)
CACAGCGCCGACACCACTGTCACATGTGCTCCACAATGGCAATGATGTCG
AGCTTCTCCCAAGCCCAGTTCAAAGTTGCCAGACGTCTGTTCCCGAGCCC
GTTCTGCACGGCACTAGGAGCAGGAGGAGGGGGGGGGGGCTTCATGATCG
CCAGCACATCAAGCGAACTGCAGTTGCACGTGATTGACAGGATTCGAGGT
TGCCTGTACGGGGAGGTGCTTCGAGCTATGGAGGTTTCGCGCGGAGGTTT
CTATGCTATCAAGGTACGCACGCTGTGTGTGTCCGCTCCGCTGACGTGCG
CTGCTGTAAGTAGGCTGAAAATGATCTGTTTGACTGATAACCTACCGTTT
ATATCTTGGGACGACATCACACAGCAAGAGTCGCTTATTTTCTGCTCGAA
GGGGGGCGCCGATAGGGTAGGATAGGATGGGTTGGCGTGAGGAAAGAACA
CCAATATCCAGCTCGCTCCTTAATCTCAAGACTCTGCCGTGCACGAGTTT
GTTTGCTTCAGATGTGTACTCTGCGGGGTGGTGGAAATCAAACCTTAAAC
CATCGGAAGAGTAGGTGCGTGGTTGCGGACAAAATAGCTTGTGATTATTT
TCCTCGCGGCGGGGCTAGCCGGAGGCACTTCAAAAGTAAAACATTGCGGC
CGTGCGTGCTTCCGACCAGCCGTAACAGGTCTAGTCTCGCGCGCTGGCAC
GTGTTGGTGTTGACATGTACACGTTGCGTTATATATTTTATGCGAGGCCG
TTTGTACCGTAGGCGGTCACTCACGTGTACCGCGCGATACATCAGTAGGC
GGTGTCGAGAACGGGCGGCGGCACCGTTCTCCCTTTTTCTCGTCTCCGTT
CCTACCTTTCCGCTTCGATCGCACTTAATGGTGCGAGCAAAAGATAATCG
AGAGAGCGTGCCCAAAGAAAAAAGCAACGGACTCCAGGTCCAAAGCTCTC
AAGCCAAGGAGGCTGGAGTGCTTGACTAAGCGGCGGTGCCGATCATTTTT
TTTTTGAATGATTCCGAAATCAACGTGCCTGCAAACAAGTTTCTCTGCGG
AGAGATTTTTCTCTGCGGCTGACAAAAGCACCGCAATTGCATCGCCTCAT
CATGTTGTTTTTGTTTTTGTTCGTTTTTCTCCCATCATTGGACTCTGTCG
TCTACCCCTCTGGCCCCTATCCTCCACTTCTACCAGCTAGACGACCCAAC
CGGGGTCACATAGGAGGGGGGGGTTGGACACCCTCCTGCGGTTCCTGCCT
GAGATATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCGCGCGACTT
GCGAAGTCGATCAAGTTTACGAACAACGAGCTTTGCAGCGCGTCGCTTCC
AACCGAGACCAGGATTTAATAAGCGAGAAAAACTCACTCTGTCGGGACTC
GAACCCATGACCTGGCCCTTAGCAGGCTGCGAGGTTACCCACTAGACCAC
CGGGGCGACCGGCCATGTGTGGGTCCACAGCAGTGCTTGAAGAGCGAAAC
GTTCCAGGCACCAGCCCCTATTTTCACCTCGCTCATGCCCCCCACGAAAT
CCTTTTTTTGTTTCTCCAGTTTGGGTATCCAAAGACACAATGCAGACACC
GGTGCGGGTACGACGGATGAAAAGGGTGTGCGCCTCAATCGCGCTGCTGC
TGTTGCACTGTACGGCAACAAGCAGCATAATTTGTAGTCTACAGCAAGCA
CTTGCAGTACTCAAATCCTACAAAGGCTGCGCGATCTGCGAGGAGATTAC
TACTACCGTAGTTCGCTGCCTCGCGTGCCTCACCTCACCCCGGGGGGCCC
GCCGCCCACCCGCCACCGCCAACGTTGCGAAATATAGTCTATAGTTAACC
AACCATGCGCCTGTCTGTCTGTCTGTCTCACGTTCGTGCGTAATGGCCTT
CAGCAAATGAGCCTCGAGAGGATATCAAGCATGGCTGGACGTCATTCTTG
TGAAGATCCGCTGCACGAGGTTGCCATTCTCCAGTTTTTGAAAGCTCATG
GATCGCACCCGAACGTCATCGAAGTTGTCGAGGTGTGTGTCCAAAGCATG
CCCGCATCCCGCTCTCTACTTGTCCCCCTCCCAGGCGGTTGAAAAAACTT
CAGTATGAATACACATACATGGAACCCCCCCCCCCGTTTTGTGTTTGCAT
CAGTAGTCTACGCAGCAAAATGATTAGGCAAACGGATGGGATATAGTATT
CAATCCGTGCTTTGGGGTTACGGTTAGGGTTAGGGATATGGTCTGAGCAC
CCCCTCCTCCCTATTCTTTTTCTAGATACTCTTAAAGTCCTGCGTAGGCG
GTCCGTTTGTATCCTAGGCTACAAGCCTGGTGATGTCTGTTCTTCTCGAG
CTTGTGTGTCCGAATCTCTCTGGAGTAGCCGTGGAAAGTGCAGAGTCGTG
GGTGAACACAAAAAAAGAGAGACTTCCTGTCTGTGTGACCCCGGCTGGCA
CGTCAAACATACATCGAAAGGTGTAGGCTGGCGCCCAGAATACGTGGAAT
AGATGGGGCGAAAACACCTTCGAAGCAAATAAGAGGGCACATGCGGCGAT
TCAATGTGTATTCTACCGAACAACCACGATTACCACAGATAAGTATATGG
TAAGGTGCCTCGGTGACTTTATGCGTGCGTGTATGTGTGTGTGCAGCCAA
CTGCATTATTCTATTCCACCGGTGTCTCAAGTTCGTTCATAGCTGCATTA
TCTTTGTTCGTCTCTTCAGCCAGCGTTCTTCCCACACCACTTTACCTTGA
AATCGGCCTGCGTCGAGTACGTACATACGTGCCTCCTCAATCTCCATGCC
GCCCCCCGACCGCCATCTTCTTTTAATCACCACGCCCCTCTAACCATTCG
CAAAAAGCAACTAATGGGAGCTGAAACCTTGTACAATATTTGTTGCCGCA
ACGAGTCGAATTTATACCCACGTCATTGTAGGTGCTCCGAGACGAAGAGT
ACATCTATGTCGTCCTGCCGTTCTGCGACGGGGGGGAGCTGTATAGCCGA
GTGTCCCACCCTAGCACAGGGCTAGGGCCGGCCGCCAGCACCGGGTTGAA
CGAGGACGTCGCGCGGCCGATTATTCGTGGCCTGCTTGCCGGCATGGCCT
TCTTGCACGGGCACCAGATATGCCACAGGTATTTTTGCAGTCAGTATCAG
GTTGCCGTAGTATCATCACGGTAGTGGTGAAAACGCGAAGTAGTTGAAAT
AATGCGGCGGAAAATGAAAATTTAGGAGCGCGAGAGAGCCAGAGGAGAGC
AAAGCACCTTAACCGTGTCATTAGAAGGCGAAGCTCTGAAAACTTTTGTA
GTTGCGCAAAGGACTAAATGCACTAAAGATCTGAACGGACGAACTTACTA
CATGGTCCGTGCCGTACTTCACGATGACAATCGTTACAGTCCGCTAGGAC
CGTTCATCGTGCTACAAAGAAGCCTGCCGTCTCGTTCCCCGCCGCCGTTG
AAAATCACGGGGCGCATGTTTGCAACTTCACCACAACAACACCCCCGCCC
CACCCATGTTTCGCCCCCCCCCGCCCCCAAGGGACGTGAGCCTCGAGAAC
ATCGTCCTGACCGTGTCCGGTGAGGTCAAGATCATCGACTTCGGCTTGGC
GCTCAGGTCCGGACAGCACCGGCCGCAAGGCCGCACGGCCCAATTCGACG
GTGACAACCAGCTCGACGTGCGCAGCATCTCGCCTACGGGGCATTTCGGG
AAGAAGAACTACAGTAAGTAGTGCGATAGGGCATACCGTAGGTGACACAA
GATACCGCACCCCCTGAACCGATTTTCAAAGCTCGATTTCTCCACAACGA
AGAGTATTCGCAGATCATGTGTAGAGATTTCGGAAAGCTTTCGATGGGAC
GGCTTCAACGCCGCCATTTTCGACACCGCCGCTAGTTTCTCCTGGAGTAG
TCGAGTTTTGAAACATCGGTCCGGGTGTGTGGTATCTTGTGTCATGTCAC
CTACGGTATACAACACATACACGTATGTATGGCCTCGAAAGAACTCGTTG
TCGTGCGGCCAGGTAATGTGTGTTATGTTGTACCCTCGGTGTTTGTTTGT
TAATTCTGCTGCAAGCCTTGTTCTTTCTTTGCCTTGTTGCCGAGTCCACC
CCCATCGCGAAACCTAACCTGTTCTGATCTCTTTTCTGCTGCTCCAAATT
TTCCAAGTGTCCCCGGAAGTAGCGATGAACGAGGAGGACTACAATGGGTT
CGCTGTGGACGTCTGGGCTCTGGGGGTCGTCATATTTATGTAAGAGGGAG
AGAGTTTGAGAGCCGGGGGGGGGGGGTTGNNNNNNNNNNNNNNNNNGGGG
GGGGGGGGGGGGTTGGTATGCGGGCGGGCACCGAATGCTTTGGGTTGCGC
GGCGACACTGTCATTGTTCCCTATCAACTATGAGGTGTAGCTTGACCACA
TACAGATTTTAACATTCGTGACTCCACGCAAGCAAAAAGATCTCTGTCAC
CTTCCCAGGTCATTAGCCAAGATAGTGCCGAAAGGTGTACGTAAAACTCG
ACCAGACATACAAGCAGATCCTTCCGTGAATTCCACCGGAGGCGGGCGGA
ATCCTAGGCCCGGAGATTGGTCGTTGCTCTGAACCATTTTGGTTCCCGCC
AGACGCACTCGATTCAAGGACACCGCCAGGATAGACCACAGGAAATATAT
GGCCCCGGCACGGCGCAAGCTAGTGTGTCGCTCTCCAGACAGTCCTCCTC
CGGCTGTCTTGTACCACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTACC
CTTTTATCTTGCGTCAACGCGCCTGCTAACCATGCTGCTTGTCGATGCCT
TGCTGTTGATGCTGTTGTTGCCGTCGTTGTTCACAGCACGCTCGCAGGGA
TCCCTCCCTTCCACATCCCGATCCCCGCACGGGACCACCGCTGCCACACC
ATCGCCGTCGAGCGCGGCTTGTTGGAGGTCGTCAGGCGGTGGGGGCTAAC
AATGTCCGACGAGGTGGGCGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_284:293712..298686-

>EsuBft1507_4a-0001 ID=EsuBft1507_4a-0001|Name=EsuBft1507_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_284:293712..298686- (Ectocarpus subulatus male Bft15b)
ATGTGCTCCACAATGGCAATGATGTCGAGCTTCTCCCAAGCCCAGTTCAA
AGTTGCCAGACGTCTGTTCCCGAGCCCGTTCTGCACGGCACTAGGAGCAG
GAGGAGGGGGGGGGGGCTTCATGATCGCCAGCACATCAAGCGAACTGCAG
TTGCACGTGATTGACAGGATTCGAGGTTGCCTGTACGGGGAGGTGCTTCG
AGCTATGGAGGTTTCGCGCGGAGGTTTCTATGCTATCAAGCAAATGAGCC
TCGAGAGGATATCAAGCATGGCTGGACGTCATTCTTGTGAAGATCCGCTG
CACGAGGTTGCCATTCTCCAGTTTTTGAAAGCTCATGGATCGCACCCGAA
CGTCATCGAAGTTGTCGAGGTGCTCCGAGACGAAGAGTACATCTATGTCG
TCCTGCCGTTCTGCGACGGGGGGGAGCTGTATAGCCGAGTGTCCCACCCT
AGCACAGGGCTAGGGCCGGCCGCCAGCACCGGGTTGAACGAGGACGTCGC
GCGGCCGATTATTCGTGGCCTGCTTGCCGGCATGGCCTTCTTGCACGGGC
ACCAGATATGCCACAGGGACGTGAGCCTCGAGAACATCGTCCTGACCGTG
TCCGGTGAGGTCAAGATCATCGACTTCGGCTTGGCGCTCAGGTCCGGACA
GCACCGGCCGCAAGGCCGCACGGCCCAATTCGACGGTGACAACCAGCTCG
ACGTGCGCAGCATCTCGCCTACGGGGCATTTCGGGAAGAAGAACTACACG
ATGAACGAGGAGGACTACAATGGGTTCGCTGTGGACGTCTGGGCTCTGGG
GGTCGTCATATTTATCACGCTCGCAGGGATCCCTCCCTTCCACATCCCGA
TCCCCGCACGGGACCACCGCTGCCACACCATCGCCGTCGAGCGCGGCTTG
TTGGAGGTCGTCAGGCGGTGGGGGCTAACAATGTCCGACGAGGTGGGCGT
GTAG
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