EsuBft1476_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1476_6a-0001
Unique Name	EsuBft1476_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_54	contig	Scaffold_54:85529..87252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	588596.U9UNJ9
ProteomeId	EsuBft1476_6
Protein domains	Coil
Protein domains	PF13358
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	4751\|Fungi
Length	168
Evalue	3.69e-17
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a	EsuBft1476_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_54 85529..87252 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a-0001-exon	EsuBft1476_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 85529..85564 +
EsuBft1476_6a-0001-exon	agat-exon-62638	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 85609..87252 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a-0001-exon	agat-five_prime_utr-2725	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_54 85529..85548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a-0001-cds	EsuBft1476_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_54 85549..85564 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a-0001-exon	agat-three_prime_utr-4179	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_54 86895..87252 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_6a-0001	EsuBft1476_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_54 85549..86894 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_54:85529..87252+
coding sequence from alignment at Scaffold_54:85529..87252+

spliced messenger RNA

>EsuBft1476_6a-0001 ID=EsuBft1476_6a-0001|Name=EsuBft1476_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1680bp|location=Sequence derived from alignment at Scaffold_54:85529..87252+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCACACGCGCTCCGGGCACATGGGTCGCCCAAAGGGCCCCTTCGCCCCC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAACAAGGCAAGCCATTACCGCCTTCAACC
GCGGTGGAGAGGGGCGGCAGCAGGTGGTGGACAACACCGGGCAGGGAGAG
GAGGACGGCGGAGAGGACGGGGACTCGGGTGGGAGCGGGGCAGCTGGTGA
AGCAGGCAAGAGGCGTCGCTGCTGCGTCGTGCGCGTTCTGTCTGAGCTCA
AGGCGTTCAGGGAGGAGCTCAACATGGTTGAGAAGCTCTTCAAGGCACAC
GGGCACCTGTGCATCTTCTTGCCGAAGTACCACCCAGAGCTCAACGCAAT
CGAGCGATACTGGGGGTACATCAAGCACCTCCTCCGCCTCCACTGCGAGT
ATTCCCTTCGCCACATGCTCCAGGTCTTGCCCGGCGCGTTGAGCGGCGTA
CCCGCACGGTTTATCCGCGCATGGAGCAGGGTGACGTGGCTGTACATCGA
AGCCTACGACGAGGGCCTGGAGGACTACCTCGAGTACCGCGATCTCAAGG
AGTGGGGGAAGCACCGAGAAGCCACCGCCAGGGGAGATGCCGTGATTCAG
GCGAGGGGGGCGGGGAAGACGCCGGAGCAGAAGAAGGCAGCCGAGGCGAA
GGCGCTTGCGGCTGCGCAGGAAGTGCGCAAGAAGTCGATGGCAGCGACCA
GAGAAGCCTTCAACACGTGGACGAGCAAGAGAGCCTCCCGGAAGGAGCAG
CTACGGCTGTGGATTTTGCGCAACACGATGAATTTTTTGAGGAAATGGTT
GGGCGGGCACGCTCAGGCGTGAGTGGGGAGGGTACGTATCTATATGTCGC
GGTGTGTTGTAGTGTTGGTTTCTCGCGTTTAGGCGCGGTAGAGGCGTTCG
TCATGGTCACCAACTCAACGCTATAGCTGTCTCTCTTGGTATCGGACTTG
CTTAGAGAGAACGGATGTGATTGCTGCATGCTTTGTTTGCAGCACCTTCA
CCAGCCAGGGGTTGAGTAGAAAGTAAACGGCGGTATTGTATGTATGTATG
TACATATGTAACGTGTAAATAAATGTAAATATGGATTGACAACGGTTTTT
TAACTGATGATGTTCTGAAGGCATATACGTGCAGAAGGGAGGGGTTGAGG
GGGGGTCGTGGTGTACTTTGGGGGCTCCGT

protein sequence of EsuBft1476_6a-0001

>EsuBft1476_6 ID=EsuBft1476_6|Name=EsuBft1476_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MGRPKGPFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQAITAFNRGGEGRQ
QVVDNTGQGEEDGGEDGDSGGSGAAGEAGKRRRCCVVRVLSELKAFREEL
NMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHML
QVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHRE
ATARGDAVIQARGAGKTPEQKKAAEAKALAAAQEVRKKSMAATREAFNTW
TSKRASRKEQLRLWILRNTMNFLRKWLGGHAQA

mRNA from alignment at Scaffold_54:85529..87252+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1476_6a-0001 ID=EsuBft1476_6a-0001|Name=EsuBft1476_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1724bp|location=Sequence derived from alignment at Scaffold_54:85529..87252+ (Ectocarpus subulatus male Bft15b)
CGCACACGCGCTCCGGGCACATGGGTCGCCCAAAGGGTAAGCGCAAGCTG
CCAAGGAACGCCGACGGCACGATTCGGAAGGCCCCTTCGCCCCCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTG
GAGAGGGGCGGCAGCAGGTGGTGGACAACACCGGGCAGGGAGAGGAGGAC
GGCGGAGAGGACGGGGACTCGGGTGGGAGCGGGGCAGCTGGTGAAGCAGG
CAAGAGGCGTCGCTGCTGCGTCGTGCGCGTTCTGTCTGAGCTCAAGGCGT
TCAGGGAGGAGCTCAACATGGTTGAGAAGCTCTTCAAGGCACACGGGCAC
CTGTGCATCTTCTTGCCGAAGTACCACCCAGAGCTCAACGCAATCGAGCG
ATACTGGGGGTACATCAAGCACCTCCTCCGCCTCCACTGCGAGTATTCCC
TTCGCCACATGCTCCAGGTCTTGCCCGGCGCGTTGAGCGGCGTACCCGCA
CGGTTTATCCGCGCATGGAGCAGGGTGACGTGGCTGTACATCGAAGCCTA
CGACGAGGGCCTGGAGGACTACCTCGAGTACCGCGATCTCAAGGAGTGGG
GGAAGCACCGAGAAGCCACCGCCAGGGGAGATGCCGTGATTCAGGCGAGG
GGGGCGGGGAAGACGCCGGAGCAGAAGAAGGCAGCCGAGGCGAAGGCGCT
TGCGGCTGCGCAGGAAGTGCGCAAGAAGTCGATGGCAGCGACCAGAGAAG
CCTTCAACACGTGGACGAGCAAGAGAGCCTCCCGGAAGGAGCAGCTACGG
CTGTGGATTTTGCGCAACACGATGAATTTTTTGAGGAAATGGTTGGGCGG
GCACGCTCAGGCGTGAGTGGGGAGGGTACGTATCTATATGTCGCGGTGTG
TTGTAGTGTTGGTTTCTCGCGTTTAGGCGCGGTAGAGGCGTTCGTCATGG
TCACCAACTCAACGCTATAGCTGTCTCTCTTGGTATCGGACTTGCTTAGA
GAGAACGGATGTGATTGCTGCATGCTTTGTTTGCAGCACCTTCACCAGCC
AGGGGTTGAGTAGAAAGTAAACGGCGGTATTGTATGTATGTATGTACATA
TGTAACGTGTAAATAAATGTAAATATGGATTGACAACGGTTTTTTAACTG
ATGATGTTCTGAAGGCATATACGTGCAGAAGGGAGGGGTTGAGGGGGGGT
CGTGGTGTACTTTGGGGGCTCCGT

Coding sequence (CDS) from alignment at Scaffold_54:85529..87252+

>EsuBft1476_6a-0001 ID=EsuBft1476_6a-0001|Name=EsuBft1476_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_54:85529..87252+ (Ectocarpus subulatus male Bft15b)
ATGGGTCGCCCAAAGGGCCCCTTCGCCCCCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTGGAGAGGGGCGGCAG
CAGGTGGTGGACAACACCGGGCAGGGAGAGGAGGACGGCGGAGAGGACGG
GGACTCGGGTGGGAGCGGGGCAGCTGGTGAAGCAGGCAAGAGGCGTCGCT
GCTGCGTCGTGCGCGTTCTGTCTGAGCTCAAGGCGTTCAGGGAGGAGCTC
AACATGGTTGAGAAGCTCTTCAAGGCACACGGGCACCTGTGCATCTTCTT
GCCGAAGTACCACCCAGAGCTCAACGCAATCGAGCGATACTGGGGGTACA
TCAAGCACCTCCTCCGCCTCCACTGCGAGTATTCCCTTCGCCACATGCTC
CAGGTCTTGCCCGGCGCGTTGAGCGGCGTACCCGCACGGTTTATCCGCGC
ATGGAGCAGGGTGACGTGGCTGTACATCGAAGCCTACGACGAGGGCCTGG
AGGACTACCTCGAGTACCGCGATCTCAAGGAGTGGGGGAAGCACCGAGAA
GCCACCGCCAGGGGAGATGCCGTGATTCAGGCGAGGGGGGCGGGGAAGAC
GCCGGAGCAGAAGAAGGCAGCCGAGGCGAAGGCGCTTGCGGCTGCGCAGG
AAGTGCGCAAGAAGTCGATGGCAGCGACCAGAGAAGCCTTCAACACGTGG
ACGAGCAAGAGAGCCTCCCGGAAGGAGCAGCTACGGCTGTGGATTTTGCG
CAACACGATGAATTTTTTGAGGAAATGGTTGGGCGGGCACGCTCAGGCGT
GA