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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 28532.XP_010532348.1 |
| ProteomeId | EsuBft1476_3 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 35493|Streptophyta |
| Length | 1867 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.55e-34 |
| EggNOG OGs | COG2801@1|root,COG4284@1|root,KOG0017@2759|Eukaryota,KOG2388@2759|Eukaryota,37MVU@33090|Viridiplantae,3GGIU@35493|Streptophyta,3HSQP@3699|Brassicales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | USP |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K12447 |
| KEGG Reaction | R00289,R00502,R01381,R03077,R08845 |
| KEGG Pathway | ko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130 |
| KEGG Module | M00014 |
| GOs | GO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576 |
| EC | 2.7.7.64 |
| Description | udp-sugar |
| COG category | M |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005515 |
| EC | 3.1 |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0004518 |
| GO | 0090304 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAACGCCCTGAACTGCACCTCCACCACATCCAACCCAGAGAAGAAGTCGC
CGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCG
TTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGC
CCAAAAGTGTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCG
TGGGCATCTTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACC
TGGCAATCCGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCC
CATCGCAGAGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGG
AGGGCGCGTCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGAT
GGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGG
GCCGCCCGCGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGT
CGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCG
AGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATCCGCGAAGCTG
CGGCAGCGACAGCGACAGCAGCAGCGGCGGCAGCGGCGGCGATGACGGCG
GCAGCGACAGCAGCAGTGGCAGCGACAGCGAGACGGATCTCCCGGCGCTC
TGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGAACT
CACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAAACCCGAGGTACGAGT
CGCCCCCGTCGCCGACAAGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGC
CTGCCCGTCAGCAGGACGGAGGGGTTCACCAGCTGGATGCTCCCGGCGAT
GCTTCACGTGGCGGAGGAGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGT
TCGAGCGAGCGGAGGAGGCCCACACTGCGCGCCAAGGGGAGGAGGATTTC
CTGCTGGGTACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGAC
GGCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCATAGGCAAGCGTCCGA
GTGATGTAGAAGCCCCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTT
TACCGAGAGGGGTGGGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTT
GGGCAGGGGGACGTTTTCATTCGCCATGAGGGAAGAGTTTGAAGGGCACT
TGGGCAGGGGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGG
CCTGTGGGCTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAA
GATAGAAAAGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCC
CGAACGTCGATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCC
ATCAAACTGATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCA
CTGGGATGTGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTT
TTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAG
GCTGAGCGTGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTA
CCACGCTGCTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGG
ACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATC
GTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGA
GGAGTTGCTTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGC
CATCGAGAGAGATGTAG back to topprotein sequence of EsuBft1476_3a-0001 >EsuBft1476_3 ID=EsuBft1476_3|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=602bp
MWHGHPPPPGATYPFLKPAVYKVKRTHEPKAQKCFYLGPGISTNRDCVGI
LNEKRQAVTTRNFTWQSVPAAPDALPQSLPPIAEEEVESTTEEDEVGEGA
SNQGGGRAEREPVDGGPGFNLGTTAAPGPAGPPARAAPAAPPAAPQESGA
GDAGDGAPSSRESASVAPSTTSTGTADPRSCGSDSDSSSGGSGGDDGGSD
SSSGSDSETDLPALCGPEARRLARFDKPAELTSRRTRENPRRNPRYESPP
SPTSAEALLASVASLPVSRTEGFTSWMLPAMLHVAEELEARVVRELLFER
AEEAHTARQGEEDFLLGTVDLMLNSPDAFETALASHELSESPIGKRPSDV
EAPPMTVAGVAKSVYREGWEQAMREEFEGHLGRGTFSFAMREEFEGHLGR
GTFSFVHSAPEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNV
DYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLK
LPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPC
VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLSSLNKSGNGLMGVPSR
EM back to topmRNA from alignment at Scaffold_54:103301..105365+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2065bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)
CAACGCCCTGAACTGCACCTCCACCACATCCAACCCAGAGAAGAAGTCGC
CGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCG
TTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGC
CCAAAAGTGTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCG
TGGGCATCTTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACC
TGGCAATCCGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCC
CATCGCAGAGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGG
AGGGCGCGTCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGAT
GGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGG
GCCGCCCGCGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGT
CGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCG
AGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGTGGCGG
CGAGGACGACCGCCGCAGCAGCGGTAGCGGCGGCAGCGGCGGCGACAGCA
GCAGCCGCGAAGCTGCGGCAGCGACAGCGACAGCAGCAGCGGCGGCAGCG
GCGGCGATGACGGCGGCAGCGACAGCAGCAGTGGCAGCGACAGCGAGACG
GATCTCCCGGCGCTCTGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGA
CAAGCCGGCGGAACTCACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAA
ACCCGAGGTACGAGTCGCCCCCGTCGCCGACAAGTGCCGAAGCCCTGCTC
GCCTCGGTGGCGAGCCTGCCCGTCAGCAGGACGGAGGGGTTCACCAGCTG
GATGCTCCCGGCGATGCTTCACGTGGCGGAGGAGCTAGAGGCGAGGGTGG
TGCGAGAGTTGCTGTTCGAGCGAGCGGAGGAGGCCCACACTGCGCGCCAA
GGGGAGGAGGATTTCCTGCTGGGTACGGTGGACCTCATGCTCAACTCGCC
AGACGCCTTCGAGACGGCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCA
TAGGCAAGCGTCCGAGTGATGTAGAAGCCCCACCCATGACTGTAGCCGGC
GTTGCCAAGTCTGTTTACCGAGAGGGGTGGGAACAGGCCATGAGGGAAGA
GTTTGAAGGGCACTTGGGCAGGGGGACGTTTTCATTCGTACATAGCNACG
GCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCATTGGCAAGCGTCCGAG
TGAAGTAGACCCCCCACCCATGACCGTAGCCGGCGTTGCCAAGTCTGTGT
ACAGAGAGGGGTGAGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTG
GGCAGGGGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGGCC
TGTGGGCTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAAGA
TAGAAAAGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCCCG
AACGTCGATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCCAT
CAAACTGATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCACT
GGGATGTGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTT
CTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGC
TGAGCGTGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTACC
ACGCTGCTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGAC
CCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCGT
GATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGG
AGTTGCTTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGCCA
TCGAGAGAGATGTAG back to topCoding sequence (CDS) from alignment at Scaffold_54:103301..105365+ >EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1809bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)
ATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCGTTCCTCAA
ACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGCCCAAAAGT
GTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCGTGGGCATC
TTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACCTGGCAATC
CGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCCCATCGCAG
AGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGGAGGGCGCG
TCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGATGGAGGACC
AGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGGGCCGCCCG
CGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGTCGGGCGCG
GGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCGAGCGTCGC
CCCATCTACCACGTCGACCGGCACGGCCGATCCGCGAAGCTGCGGCAGCG
ACAGCGACAGCAGCAGCGGCGGCAGCGGCGGCGATGACGGCGGCAGCGAC
AGCAGCAGTGGCAGCGACAGCGAGACGGATCTCCCGGCGCTCTGTGGGCC
AGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGAACTCACCAGCC
GCCGCACTAGGGAGAACCCTCGCCGAAACCCGAGGTACGAGTCGCCCCCG
TCGCCGACAAGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGCCTGCCCGT
CAGCAGGACGGAGGGGTTCACCAGCTGGATGCTCCCGGCGATGCTTCACG
TGGCGGAGGAGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTTCGAGCGA
GCGGAGGAGGCCCACACTGCGCGCCAAGGGGAGGAGGATTTCCTGCTGGG
TACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGG
CGTCCCACGAGCTAAGTGAATCCCCCATAGGCAAGCGTCCGAGTGATGTA
GAAGCCCCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGA
GGGGTGGGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCAGGG
GGACGTTTTCATTCGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCAGG
GGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGGCCTGTGGG
CTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAAGATAGAAA
AGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCCCGAACGTC
GATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCCATCAAACT
GATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCACTGGGATG
TGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAG
CTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCG
TGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTACCACGCTG
CTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGT
GTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTA
TGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGTTGC
TTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGCCATCGAGA
GAGATGTAG back to top
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