EsuBft1476_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1476_3a-0001
Unique NameEsuBft1476_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:103301..105365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog28532.XP_010532348.1
ProteomeIdEsuBft1476_3
Protein domainsIPR013103
Protein domainsSSF56672
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl35493|Streptophyta
Length1867
Hectar predicted targeting categoryother localisation
Evalue8.55e-34
EggNOG OGsCOG2801@1|root,COG4284@1|root,KOG0017@2759|Eukaryota,KOG2388@2759|Eukaryota,37MVU@33090|Viridiplantae,3GGIU@35493|Streptophyta,3HSQP@3699|Brassicales
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EC2.7.7.64
Descriptionudp-sugar
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
EC3.1
GO0003824
GO0097159
GO1901363
GO0004518
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_3aEsuBft1476_3aEctocarpus subulatus male Bft15bgeneScaffold_54 103301..105365 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_3a-0001-exonagat-exon-62621Ectocarpus subulatus male Bft15bexonScaffold_54 103301..103889 +
EsuBft1476_3a-0001-exonEsuBft1476_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 103955..104587 +
EsuBft1476_3a-0001-exonagat-exon-62620Ectocarpus subulatus male Bft15bexonScaffold_54 104721..105365 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_3a-0001-exonagat-five_prime_utr-2724Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 103301..103358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_3a-0001-cdsEsuBft1476_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 103359..103889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_3a-0001EsuBft1476_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 103359..105365 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACGCCCTGAACTGCACCTCCACCACATCCAACCCAGAGAAGAAGTCGC
CGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCG
TTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGC
CCAAAAGTGTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCG
TGGGCATCTTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACC
TGGCAATCCGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCC
CATCGCAGAGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGG
AGGGCGCGTCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGAT
GGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGG
GCCGCCCGCGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGT
CGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCG
AGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATCCGCGAAGCTG
CGGCAGCGACAGCGACAGCAGCAGCGGCGGCAGCGGCGGCGATGACGGCG
GCAGCGACAGCAGCAGTGGCAGCGACAGCGAGACGGATCTCCCGGCGCTC
TGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGAACT
CACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAAACCCGAGGTACGAGT
CGCCCCCGTCGCCGACAAGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGC
CTGCCCGTCAGCAGGACGGAGGGGTTCACCAGCTGGATGCTCCCGGCGAT
GCTTCACGTGGCGGAGGAGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGT
TCGAGCGAGCGGAGGAGGCCCACACTGCGCGCCAAGGGGAGGAGGATTTC
CTGCTGGGTACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGAC
GGCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCATAGGCAAGCGTCCGA
GTGATGTAGAAGCCCCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTT
TACCGAGAGGGGTGGGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTT
GGGCAGGGGGACGTTTTCATTCGCCATGAGGGAAGAGTTTGAAGGGCACT
TGGGCAGGGGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGG
CCTGTGGGCTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAA
GATAGAAAAGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCC
CGAACGTCGATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCC
ATCAAACTGATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCA
CTGGGATGTGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTT
TTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAG
GCTGAGCGTGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTA
CCACGCTGCTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGG
ACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATC
GTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGA
GGAGTTGCTTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGC
CATCGAGAGAGATGTAG
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protein sequence of EsuBft1476_3a-0001

>EsuBft1476_3 ID=EsuBft1476_3|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=602bp
MWHGHPPPPGATYPFLKPAVYKVKRTHEPKAQKCFYLGPGISTNRDCVGI
LNEKRQAVTTRNFTWQSVPAAPDALPQSLPPIAEEEVESTTEEDEVGEGA
SNQGGGRAEREPVDGGPGFNLGTTAAPGPAGPPARAAPAAPPAAPQESGA
GDAGDGAPSSRESASVAPSTTSTGTADPRSCGSDSDSSSGGSGGDDGGSD
SSSGSDSETDLPALCGPEARRLARFDKPAELTSRRTRENPRRNPRYESPP
SPTSAEALLASVASLPVSRTEGFTSWMLPAMLHVAEELEARVVRELLFER
AEEAHTARQGEEDFLLGTVDLMLNSPDAFETALASHELSESPIGKRPSDV
EAPPMTVAGVAKSVYREGWEQAMREEFEGHLGRGTFSFAMREEFEGHLGR
GTFSFVHSAPEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNV
DYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLK
LPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPC
VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLSSLNKSGNGLMGVPSR
EM
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mRNA from alignment at Scaffold_54:103301..105365+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2065bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)
CAACGCCCTGAACTGCACCTCCACCACATCCAACCCAGAGAAGAAGTCGC
CGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCG
TTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGC
CCAAAAGTGTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCG
TGGGCATCTTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACC
TGGCAATCCGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCC
CATCGCAGAGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGG
AGGGCGCGTCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGAT
GGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGG
GCCGCCCGCGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGT
CGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCG
AGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTGGGTGGCGG
CGAGGACGACCGCCGCAGCAGCGGTAGCGGCGGCAGCGGCGGCGACAGCA
GCAGCCGCGAAGCTGCGGCAGCGACAGCGACAGCAGCAGCGGCGGCAGCG
GCGGCGATGACGGCGGCAGCGACAGCAGCAGTGGCAGCGACAGCGAGACG
GATCTCCCGGCGCTCTGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGA
CAAGCCGGCGGAACTCACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAA
ACCCGAGGTACGAGTCGCCCCCGTCGCCGACAAGTGCCGAAGCCCTGCTC
GCCTCGGTGGCGAGCCTGCCCGTCAGCAGGACGGAGGGGTTCACCAGCTG
GATGCTCCCGGCGATGCTTCACGTGGCGGAGGAGCTAGAGGCGAGGGTGG
TGCGAGAGTTGCTGTTCGAGCGAGCGGAGGAGGCCCACACTGCGCGCCAA
GGGGAGGAGGATTTCCTGCTGGGTACGGTGGACCTCATGCTCAACTCGCC
AGACGCCTTCGAGACGGCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCA
TAGGCAAGCGTCCGAGTGATGTAGAAGCCCCACCCATGACTGTAGCCGGC
GTTGCCAAGTCTGTTTACCGAGAGGGGTGGGAACAGGCCATGAGGGAAGA
GTTTGAAGGGCACTTGGGCAGGGGGACGTTTTCATTCGTACATAGCNACG
GCTCTGGCGTCCCACGAGCTAAGTGAATCCCCCATTGGCAAGCGTCCGAG
TGAAGTAGACCCCCCACCCATGACCGTAGCCGGCGTTGCCAAGTCTGTGT
ACAGAGAGGGGTGAGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTG
GGCAGGGGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGGCC
TGTGGGCTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAAGA
TAGAAAAGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCCCG
AACGTCGATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCCAT
CAAACTGATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCACT
GGGATGTGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTT
CTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGC
TGAGCGTGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTACC
ACGCTGCTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGAC
CCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCGT
GATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGG
AGTTGCTTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGCCA
TCGAGAGAGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_54:103301..105365+

>EsuBft1476_3a-0001 ID=EsuBft1476_3a-0001|Name=EsuBft1476_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1809bp|location=Sequence derived from alignment at Scaffold_54:103301..105365+ (Ectocarpus subulatus male Bft15b)
ATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGACGTACCCGTTCCTCAA
ACCTGCCGTATACAAGGTCAAGCGCACACACGAGCCGAAAGCCCAAAAGT
GTTTTTACCTCGGCCCGGGAATCAGCACCAACCGTGATTGCGTGGGCATC
TTGAACGAAAAGCGCCAAGCGGTCACAACTCGCAACTTCACCTGGCAATC
CGTACCCGCCGCCCCCGACGCCCTGCCCCAGTCGTTGCCTCCCATCGCAG
AGGAGGAAGTGGAATCCACGACTGAGGAGGACGAGGTTGGGGAGGGCGCG
TCGAACCAAGGTGGAGGGAGGGCGGAGAGAGAACCTGTGGATGGAGGACC
AGGTTTCAACCTTGGCACGACGGCAGCCCCAGGGCCCGCGGGGCCGCCCG
CGCGCGCAGCGCCGGCGGCACCGCCGGCCGCGCCCCAGGAGTCGGGCGCG
GGCGACGCTGGCGATGGCGCCCCCTCGAGCAGGGAGAGCGCGAGCGTCGC
CCCATCTACCACGTCGACCGGCACGGCCGATCCGCGAAGCTGCGGCAGCG
ACAGCGACAGCAGCAGCGGCGGCAGCGGCGGCGATGACGGCGGCAGCGAC
AGCAGCAGTGGCAGCGACAGCGAGACGGATCTCCCGGCGCTCTGTGGGCC
AGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGAACTCACCAGCC
GCCGCACTAGGGAGAACCCTCGCCGAAACCCGAGGTACGAGTCGCCCCCG
TCGCCGACAAGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGCCTGCCCGT
CAGCAGGACGGAGGGGTTCACCAGCTGGATGCTCCCGGCGATGCTTCACG
TGGCGGAGGAGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTTCGAGCGA
GCGGAGGAGGCCCACACTGCGCGCCAAGGGGAGGAGGATTTCCTGCTGGG
TACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGG
CGTCCCACGAGCTAAGTGAATCCCCCATAGGCAAGCGTCCGAGTGATGTA
GAAGCCCCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGA
GGGGTGGGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCAGGG
GGACGTTTTCATTCGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCAGG
GGGACGTTTTCATTCGTACATAGCGCGCCAGAGGGGCGCAGGCCTGTGGG
CTCAAAGTGGTGTTTTAGTTGGAAGACCAACAAGGAAGGGAAGATAGAAA
AGTTCAAAGCGCGTCTGGTTGCTAGGGGGCTTTGGCAAATCCCGAACGTC
GATTATTTCCATTCGTTTTCCCCTTGCCCATTATCCGTATCCATCAAACT
GATGCTTGCGGTAGCAAGCAAGAAGGGCATGAACCTCAATCACTGGGATG
TGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAG
CTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCG
TGCGATTTATGGTCTAAAGCATAGCGGTAGGCAGTGGGGGTACCACGCTG
CTGATACGCTTGTCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGT
GTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTA
TGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGTTGC
TTTCTTCTCTCAACAAGAGTGGGAATGGTTTGATGGGTGTGCCATCGAGA
GAGATGTAG
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