EsuBft1476_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1476_2a-0001
Unique Name	EsuBft1476_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_54	contig	Scaffold_54:108324..123706 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1476_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	114
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Notch domain
Ec32 ortholog	Ec-00_005830.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a	EsuBft1476_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_54 108324..123706 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a-0001	EsuBft1476_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_54 109175..123612 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a-0001-exon	agat-exon-62619	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 108324..109341 -
EsuBft1476_2a-0001-exon	agat-exon-62618	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 121556..121560 -
EsuBft1476_2a-0001-exon	EsuBft1476_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 123590..123706 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a-0001-exon	agat-three_prime_utr-4176	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_54 108324..109174 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a-0001-cds	EsuBft1476_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_54 109175..109341 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1476_2a-0001-exon	agat-five_prime_utr-2723	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_54 123613..123706 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_54:108324..123706-
coding sequence from alignment at Scaffold_54:108324..123706-

spliced messenger RNA

>EsuBft1476_2a-0001 ID=EsuBft1476_2a-0001|Name=EsuBft1476_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1140bp|location=Sequence derived from alignment at Scaffold_54:108324..123706- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCCCCTTCTTGTGAAGCACCTCTTCACTCTTCACAGCTCTCCCTTGACC
TGCCAACAGCATCATCTAGCAAAGAGTTGGACAGCACTGTTCCAATGCGC
ATTCTTCTTCCGGCCAGATCCTACTACGATGACGGGGACTGCTGCGAGTG
CACCTGCGAGACAGATAACGAGCACCTCTGCCAGTTCTTCGTCTGTCTCG
ACCCTGAGGCTGAGTGTGCGGAGGACGACGACACCAACACCGATGATGCA
ATGTCGTACGAGTTTATGCCTTGGGAGACGGAGGACTAAATTGCTGCCTG
TTCTTGGATGACGTCGGCAAACATCCCGGAACAACAGTAGCAAAAGTGAT
TGTCTGAGGTGACGGGATTTGAGCTGTTTTCAAGTCATATATTTACATGA
ACGGTTGTACGTGCCCTGGGCGCACGTGTGTCTTTGTTTCTTGAGAGCAC
GGAGTACCGGGGTGCTAGATATCGAGTAGGAATCGTTTCGCGCACCGTGA
GTCGTGTTTACTGTAGGGGCCTTGCTCGTTCTCTTAGTTTTTGTTGCAAA
TCGATGGCAGCCAGAACACAGAACTCCAACAATTGGTTGGAAGACTATGC
GGAGTCGGATCAATGTTACGGCGTAGCGCTAAGGAATTCTCCATGTACAA
TACACTCTCACCACGCCAAGCCATTATTAAATAACGAATAGTCCATTCAC
GAAGTGGGGCTGTACGATTCACTTTGAATTCATGGCACCACAGCCATATC
TGCATGTGTTTTTTGCTCGCGTGGGTGTCTGTGTACGGCGTTGGTGAGCC
AGGCGACGGCGAGAACATAGCATGGGTTATCCCAGCACAGAAGTATGCAG
TGGAAATAGGAGGTGTGGCTTATTTGCCTGTTCGTGCAGAAGTGGAGCAA
ACGGGTGTCACCGGCGTCGTGATCGTGAGTCCCCTAATGTGTTTTGTACA
TCCATGTGTGGAACGGAATGCCGGTATCCCGGCGATGATTATACCCTTCT
AGCGGGATGCAAGGGAGAGAAACCTTCGCTTTCATTTTTGGTGTTGTCTG
GTCGGATCATTGCATAATATTGTAGATATACTTTTGGTGGCATCGCGTGC
CGAGCGGGAACGACGGGCTCGAGCTATTTATTTACTATTT

protein sequence of EsuBft1476_2a-0001

>EsuBft1476_2 ID=EsuBft1476_2|Name=EsuBft1476_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MRILLPARSYYDDGDCCECTCETDNEHLCQFFVCLDPEAECAEDDDTNTD
DAMSYEFMPWETED

mRNA from alignment at Scaffold_54:108324..123706-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1476_2a-0001 ID=EsuBft1476_2a-0001|Name=EsuBft1476_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=15383bp|location=Sequence derived from alignment at Scaffold_54:108324..123706- (Ectocarpus subulatus male Bft15b)
GTCCCCTTCTTGTGAAGCACCTCTTCACTCTTCACAGCTCTCCCTTGACC
TGCCAACAGCATCATCTAGCAAAGAGTTGGACAGCACTGTTCCAATGCGC
ATTCTTCTTCCGGCCAGGTAGATACGAAGCGCGTACAAGAGGTGCTGTAT
TAATAGTGACTCTACTACTGTACTACTACTCCTACTACTCTGTTCTGTAA
CATAGTCTAGTCTATGTACTCCGGTAGTAGACTAGTATTTTGATCGTGTT
TTACCGACACAGCTGTCTACATGTCTGCTGCGTATCACAACAGGTTTGCT
GCAGTGTTCGAGTAAGAGACACCCACCCGCTCGCATGTGGTATCATTTGT
CTGTATCTATGTAGTCTAATGTTTTGTCTTTTTTGATGGATGCTAACGAC
CTCCCCACCCAAGGCACGTGCACGGCAAGCAGGGGATCGAGCGAACACCA
AGCAAACACTCACCACGTGCACCATTTTCTTCCGCGTTGGCACGACCGAT
CTTTCTGCAAAAGAACCCTTTGCGGCAGCATTATTGACTGTTATGCCTAC
CTTGTAGCCTCGGACTGAGGGCGAGCATCAATCAGCGGCGTGCTCTCGGT
CTTGCAGTAATAGAGACAACGTGTCATTCATTATAGTCTATTGGACAAAT
AACATGCAATGAAAGAAGTTTGTTTACAGGAAGTGAGAGGTGATACGAGA
GGAAACAGCACAATCTGCGGAGACGTACTGAAGACTACAGGTCCGGTGTT
GTTCAACATGTACAGGTACCGGCTTCTCAACAAGATAGTGTGTCGTTCAG
TTGGGACGCGCGGGAGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNN
GGGGGGGGGGGGGGGGGGGCGGATTGGATACGACGGTGGTGGCCGAGAAA
AACGGGATCGGCGAAAACTATTGTGCACACACGCAAGAGTAAGGGCTGCA
GCTACAGAGTTCTGCCACTACTGTAGAGTCCTATTTAAGCGGCAGAGTGT
ACCCTCGCGGTGAACATCAGCCGCCGCCACTGCAACACTGCAGCCTGTCG
AAATTCCTAATGCTGTGATGACGCGTCGACGAATGCATGTTCGTCGATAC
CAGATGAATCTCCGCACCGCGTAGTGTTCTCTGAAAATTCTTGTGGTCTA
GTCTAGTCCAGGAGTAAACTTCAGTACAGTAGTAGGTCGGTGAGACAGCA
GTGCGACAGCAGTCCCGCGTCGCCCGGACACGTTGCTCCTTGAGAATATA
TCTCGGAACGGGTAGCCTTGCTGTGAGGTTATGATGCTAGGGCGCAAACG
AGCAAACTGCCTCATCTGCAGACAACTACCGTATATGCCACAAGATAACA
ACCCCCTGGACCGATTATTTTCAAAGCTCGATTACTCCACGACGAAGAGG
ATGCATAAACGAAACGATACATTTTCGAACAGCTCTCGACGAGACGGTTT
CAACGCCGCCGTTTTCGGCGCTGTGACTGTTCCTGCAGTTGAGAAATCGA
GCTTTGAAAAATTGGTCAAGGAGTTGTGTATCTTGTGTAATATGCGGCAT
AGGTATGTCAAGTATTACTTGAAGAAGTAGACCAGTACAAGCATGCTCAC
TAACTACTGTATGTAGTGTAAAGGTGTAGGTCTGCACTACGCTTTCGGTA
GATTGCGGGCTATGTTTTTCCCGTCGTGTTTGTGGGTGAGGGGGGTGGGA
CGGTGGAACTCGAACCGGGTAAAGGTGTTGCTAGTATTTAGACTCACGGT
AGCAGTAGTAGTAGCCTTCAGGTCTACACGGTGGGGCTCTTAGATGTCAC
CAACACTGTGATGCAACGAACAACGAGGATTGGGGAAAGATAGCGCACAT
GCGCAAAGGTTTGCACAGCAGAAATTTAAAAATTAGCCTATGTCGCACAC
TTGGAGTGTGTACAGCAGTATTTGTTGGTAGAGTGTCGGTTCTTATTTAT
TGTCATGTCGATGGTCGCGGGTTCATATCCCGTCTTTTTCGATGTACTTC
TTAAAACAAAATAATTAAAAATTTGATATTTTATTTCTACTATTTTTTTC
TTTTGTTTTATCTTTTGTTTTTGGTTTAGACATAACTCAACAAGAGTTAG
CAAATGATGAAATAAATAATTAATGTACAATCTAATTCAAATTTAGATCC
TGTAAGTATACTGCTGCTTGCTACGGAGCTGCCCCTGAAATGATGAACTA
AAAGTATACGAACCGCGAGAGCTTAGACTACAGTCTGATGGTTTGGGCCT
ACTAGTCTAGACATATATCCGAAGCCAAGATATCCAAAGCGAAACTACTA
ATTACTTTCGATTACTATCACTATTATTGTTATTATAGGAAGGGTGCTCC
TGAGGTATCGCCAGCTGTGCAGTCTGTCTGCCATACACAACCAACACCGG
TTCTTTGGGAACGAATAAGAGCCGCGATACGAGTGTGTAAAAGTAGCAGA
CGCCCGGGCGCCAACCGTCGAAACAAAAGAAGATTGAAACGCGGGCATGT
TGTTATTCTCACGCACATTGCTTCTTCTCCCATCATCCTGACTCACCCTT
TGCCACGACGTCCCGCGTGCTCAGCAATCGAACGGCGGTCGACCACGCTC
GCCCACGCTTTTCACGCCAAGCAGGGTGACATCTGATACCACCTTCTGTC
ACGATGAGGGCTTCCAACATCTGGCTCGGTCTCCTCGGTGCTGCGGTCAC
CACGTTTCCCACCGTTGGCGGGTTCCGAGCTAAAGACGAATCACCTTTCC
CACCTCGGAGAAGAAAAAAAAAAAAATTGACTTCGCAGATCGTTCTCAAA
CGCCCAAAAACGACGTTTAAAAAAAGTTCCCAAAAAAAAAAAGTTCCCCT
TCAGCCCGAACTTTTTTTTTCGCCGCATTGCCGAACTTTTTCGCCACGGG
AATCGTCGCCAATCGATTCCGCTTGGTCGAATTAGGGGGGGTAGAGCCAC
TCAGAAAGTTGGTCAGACAAAAAGTGGTGGTGGGAAGCGGGCTTGAAAAT
GCTGCGCGGCCAGGGCCCAGCGGTGACTGCCGCTGGCGAATGTACACGCA
TCATGTATGCTGGCCAAACAAGATACGAGGTTATCCACAAGTGGTCCCCA
CACGAACGAGGAATCAAGCTTCGCACCACCTTGTTGGACAGCAAGAGGAA
GGGCAGAAAAGCCGCGGAGAACACAGGCTACTGCGAGGCTAGCGAAGTGG
TTTTGTCCAACTTGGCCCGCGAAAAGGCTGACGCCATCATGGCGGGCAAG
CGAAACGCAGCTCGGAAGAACGGCATACCACAAGGCGGCGGAAGCGGGGG
TTGCGGGGCAGACAGGGTTATGTCCTGCCCCGTCATCGCCGCCATCCAGG
GTTCGCATGAGGGATTGAGGACACGTTCTTCTGCCACCACCAACCCGGCT
GCTAATAACCCAGAGGTAAGCTGCGCGTCCGGTTGGGCAAGTACGATGTG
TGGTACTGCTGTAGCACGGGTGCTGCTGCCTGCTGCCTGCTGCNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTTCCCCCCCCCCCC
CAAATAAATTCGGCTTTAGCTCGGAACCCGCCCGTTGCTGACACCACGGG
CTACCTTACAACCTGCTATGACTACGGCATTGGAAATGGCGAATGTGACC
CACGCAACAACAAAGAAGAATGCGGTATGTGAACCTCTTCTGCTAAGTAA
TTGACGCAAGGCACGAGCAAGCTACGTAGACAAAATACATATCACTCAGG
GGCAATTGCTCGTTGACAGCGGGGTTCTGAGGGCAGGCCTCAGCCCCCCC
GTTTGCACGTGGTGGACGTGTTTGGAGGCAGGCAGGCGTAGACCGTGGAT
GATGTGTCGTGTCCCTAGACAATGCTTTCGTCTCCCTCTTGCCGCGCCAG
CACCAGATCACCAAGGGGGGTTTAACTCGTGAGCAAGTCTATTCTATCCC
CAAACTAACAACGTCCAGGTGCTGGGTGCAGATGATGAATGAGCCTCTAC
CGTTAGCGAGCTTACTCGACGAGTGAACGGCAGCCTGCACGTCGTACAGG
AATCGAACAATGTTGATATGGTCCGTTTCCGGAAAAATTCACAATATTTT
CCCCTGCACAAAGGTGCACTTTTCTCGGGGTTGTTGTTGTTGTTGTCTAC
ACATTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAAAAGACTC
TCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACA
CGCACACATGTAACGAGAAAAAGGTATCCAAGAGCCCGAAGAGGTACACC
TAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTC
CGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTA
TACCAAAACGGAAGATTGCCGACTACAGCATANNNNNNNNNNNNNNNNNN
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NNNNNNNNNNATGCACCCGGGTTAGCCACGCCATCTCTGACGGGTCTCTC
TACAAAACCGGTGACGATGTCATCACACAAAACCAACACAGAGAGTCAGA
AAAGAAGAAAAAAAAAAACGAAAAAAATTGACAACAGATAGAAATGTTTG
TCCGTACGCCACGGGTCGATGTCCCCCGCATGCTCCGGTGCCATTGCTCC
ATCCGGCGCCGCTGTAGTCAGCCCGAGCAAAACGTCACTCGACCTGCTCC
GTCCGTACACGCTCTCGTTGCTGTCCTTCCCAGTCCGTTCCTCGCTTTCT
CCCTCATTGCACGCAAGGTTCTTCGTCTGAAAAAAATAAAAATTCTCGCG
CGGAATGGTCAACCAGCCTAGTTCAGCTCGTCGCCACCTGCTCCCTCCTC
CTTTGATGGCGAAGCCAGGTTACTGAGGCAATGCAGCGCCCTCTAGCAAA
CCTAGGGCCATGTANGGGAGTGGGGTGGGGGTACTTATATCCGAAATCTG
AAAATACCGCGTAAATCGACGTAAGGAGCGAGGGGAAGAAGGGAGTGGGG
TGGGGGTACTTATATCCGAAATCTGAAAATACCGCGTAAATCGACGTTTC
AAGGCGCATCTTCGTACGGCGATTCTTTTTTTTTTTCGTCCTTCGCTCGA
TATGTTCAGATATTCAAGAAATCTTGCTAACTTTCTGGAAGGCGGTGTTT
TTTGCAGACAATAAATCTGAGACCGGATTTGGACAGCTCTCGTGATTTGC
CACCGATGATTTTTTTCCCGATTTCCAAGTTGACAAAAAATAACGGAGTT
ATGGGCAAAAAACCGGATATTGGAGGGTATTTTGCTTAGTTTCTTGGGGA
CAATCCAACCGTACGATTCAAAAATAAAGTGCTGCAANNNNNNNNNNNNN
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GTATCGGACTTGCTTAGAGAGAACGGATGTGATTGCTGCATGCTTTGTTT
GCAGCACCTTCACCAGCCAGGGGTTGAGTAGAAAGGAAACGGCGGTATTG
TATGTATGAATGTACATATGTAACGTGTAAATAATGTAAATATGGATTGA
CAACGGTTTTTTATCTGATGATGTTCTGAAGGCATATACGTGCAGAAGGG
AGGGGTTGGGAGGGGTTGGGAGGGGTTGAGGGGGGGTCGTGGTGTACTTT
GGGGGCTCCGTGGGGTCATGAGGGGGTGGGGGTGGGGGCTCCGCGGGTCA
TTTTGGTCAAAAATGTCGCATTTCACCCAATCACCAAAAACTCATCGGAT
ATCGTCGAAGCTCGACGCCGCGGTCACGCCCAAAGTTGTTTCACTTTCCA
AATCGTTTATTTTCGAAAGATATCGCGAAAAACAAGATTGTGAATATTTG
CCCGAACGGACCATATGCTACAGGGGGCTAGCCTTGAGCACGGGAAAACA
ACGAGACAAGCACGTGTCCATCGCCATCGCATGGATTGGTGCGACAGATC
ATGCTCAGCCTTTTCCCTCACTCCCCGGAAAAGTCGAAGGCCGAGATTCC
CGCACGTCCACCTTTTTGGGCATGAAGAACCGCACCGGGGCAAGGTTTAG
ACTACATATATATGGTGTAATACGAGGGCGGCCGGGATTCTGAACTGATT
ATGTGAGTACCTTTTTTTGATGATTTCTTCACGGGCAGGTTTAGTACAGT
ACAGTATTTTTATTCCAGTATTTAACTGCGTACTAAAACGTCCAGTACAG
TACAGTACCGAGAGCCGTGCTGCCAGTACAGTATATTCCAGTATCGAGAG
CTGTACTGGAGAGTGCAGTATTTTTATTCCAGTATCGAAAGCTGTACTAA
AGCGTGCAGTATTTTTATTCCAGTATCGAAAGCTGTACTAAAGCGTGCAG
TACAGTATATTATGGCCAAAGGTACTGCAATACTGAAAATACTGGCAGTA
TTGTACTCACCACCGAATACCGGGCAATGCTCTCTCTCTCTTTTGTGCCT
AGCGATGTCAAAGCAGTAATTATAGTAAATTCTGCGTCCTTCGAACCTCA
GGTGCGACACCTACAATGTCCCAGTTCCGAAGGCACCAGGAAATCTGACG
TGCCTTCGTCCTATGTAGCAGGTATTAATCTTACATCTCTTTGCGTCCTG
TTCCCTGTTGCTCAGACTACGATGACGGGGACTGCTGCGAGTGCACCTGC
GAGACAGATAACGAGCACCTCTGCCAGTTCTTCGTCTGTCTCGACCCTGA
GGCTGAGTGTGCGGAGGACGACGACACCAACACCGATGATGCAATGTCGT
ACGAGTTTATGCCTTGGGAGACGGAGGACTAAATTGCTGCCTGTTCTTGG
ATGACGTCGGCAAACATCCCGGAACAACAGTAGCAAAAGTGATTGTCTGA
GGTGACGGGATTTGAGCTGTTTTCAAGTCATATATTTACATGAACGGTTG
TACGTGCCCTGGGCGCACGTGTGTCTTTGTTTCTTGAGAGCACGGAGTAC
CGGGGTGCTAGATATCGAGTAGGAATCGTTTCGCGCACCGTGAGTCGTGT
TTACTGTAGGGGCCTTGCTCGTTCTCTTAGTTTTTGTTGCAAATCGATGG
CAGCCAGAACACAGAACTCCAACAATTGGTTGGAAGACTATGCGGAGTCG
GATCAATGTTACGGCGTAGCGCTAAGGAATTCTCCATGTACAATACACTC
TCACCACGCCAAGCCATTATTAAATAACGAATAGTCCATTCACGAAGTGG
GGCTGTACGATTCACTTTGAATTCATGGCACCACAGCCATATCTGCATGT
GTTTTTTGCTCGCGTGGGTGTCTGTGTACGGCGTTGGTGAGCCAGGCGAC
GGCGAGAACATAGCATGGGTTATCCCAGCACAGAAGTATGCAGTGGAAAT
AGGAGGTGTGGCTTATTTGCCTGTTCGTGCAGAAGTGGAGCAAACGGGTG
TCACCGGCGTCGTGATCGTGAGTCCCCTAATGTGTTTTGTACATCCATGT
GTGGAACGGAATGCCGGTATCCCGGCGATGATTATACCCTTCTAGCGGGA
TGCAAGGGAGAGAAACCTTCGCTTTCATTTTTGGTGTTGTCTGGTCGGAT
CATTGCATAATATTGTAGATATACTTTTGGTGGCATCGCGTGCCGAGCGG
GAACGACGGGCTCGAGCTATTTATTTACTATTT

Coding sequence (CDS) from alignment at Scaffold_54:108324..123706-

>EsuBft1476_2a-0001 ID=EsuBft1476_2a-0001|Name=EsuBft1476_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_54:108324..123706- (Ectocarpus subulatus male Bft15b)
ATGCGCATTCTTCTTCCGGCCAGATCCTACTACGATGACGGGGACTGCTG
CGAGTGCACCTGCGAGACAGATAACGAGCACCTCTGCCAGTTCTTCGTCT
GTCTCGACCCTGAGGCTGAGTGTGCGGAGGACGACGACACCAACACCGAT
GATGCAATGTCGTACGAGTTTATGCCTTGGGAGACGGAGGACTAA