EsuBft1467_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1467_2a-0001
Unique NameEsuBft1467_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:305066..305239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1467_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length17
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004710.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1467_2aEsuBft1467_2aEctocarpus subulatus male Bft15bgeneScaffold_189 305066..305239 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1467_2a-0001-exonEsuBft1467_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 305066..305239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1467_2a-0001-cdsEsuBft1467_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 305066..305239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1467_2a-0001EsuBft1467_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 305066..305239 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1467_2a-0001 ID=EsuBft1467_2a-0001|Name=EsuBft1467_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=174bp|location=Sequence derived from alignment at Scaffold_189:305066..305239+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCGTGGTCGCTGATTCTGGCGTGTGTGCTGCCCCTGGTGCTCGC
ACACGGCACGGAAGACGACCCCATCAACACCCCTGAAGGAGATTGCTGCG
CTGCTCTCCTCGTCGAGGGCGAGGAGGGCTCCCTCGACGCCGCCGGCAAA
TACCGTCTGCCGCCCATTTGGTAA
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protein sequence of EsuBft1467_2a-0001

>EsuBft1467_2 ID=EsuBft1467_2|Name=EsuBft1467_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MRAWSLILACVLPLVLAHGTEDDPINTPEGDCCAALLVEGEEGSLDAAGK
YRLPPIW
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mRNA from alignment at Scaffold_189:305066..305239+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1467_2a-0001 ID=EsuBft1467_2a-0001|Name=EsuBft1467_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=174bp|location=Sequence derived from alignment at Scaffold_189:305066..305239+ (Ectocarpus subulatus male Bft15b)
ATGAGGGCGTGGTCGCTGATTCTGGCGTGTGTGCTGCCCCTGGTGCTCGC
ACACGGCACGGAAGACGACCCCATCAACACCCCTGAAGGAGATTGCTGCG
CTGCTCTCCTCGTCGAGGGCGAGGAGGGCTCCCTCGACGCCGCCGGCAAA
TACCGTCTGCCGCCCATTTGGTAA
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Coding sequence (CDS) from alignment at Scaffold_189:305066..305239+

>EsuBft1467_2a-0001 ID=EsuBft1467_2a-0001|Name=EsuBft1467_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_189:305066..305239+ (Ectocarpus subulatus male Bft15b)
ATGAGGGCGTGGTCGCTGATTCTGGCGTGTGTGCTGCCCCTGGTGCTCGC
ACACGGCACGGAAGACGACCCCATCAACACCCCTGAAGGAGATTGCTGCG
CTGCTCTCCTCGTCGAGGGCGAGGAGGGCTCCCTCGACGCCGCCGGCAAA
TACCGTCTGCCGCCCATTTGGTAA
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