EsuBft1456_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1456_7a-0001
Unique NameEsuBft1456_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:131789..133132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1456_7
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length87
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_7aEsuBft1456_7aEctocarpus subulatus male Bft15bgeneScaffold_228 131789..133132 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_7a-0001-exonEsuBft1456_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 131789..132534 +
EsuBft1456_7a-0001-exonagat-exon-78430Ectocarpus subulatus male Bft15bexonScaffold_228 133006..133132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_7a-0001-cdsEsuBft1456_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 131789..131938 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_7a-0001-exonagat-three_prime_utr-4031Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 131939..132534 +
EsuBft1456_7a-0001-exonagat-three_prime_utr-4032Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 133006..133132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_7a-0001EsuBft1456_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 131789..131938 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1456_7a-0001 ID=EsuBft1456_7a-0001|Name=EsuBft1456_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=873bp|location=Sequence derived from alignment at Scaffold_228:131789..133132+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGTGGAGTGAGGATTGCTTACGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGG
AGATTGCCAGGACACATGACGCGCTGAGTGGGGATAGCTACATACTGAAA
CCTCACAGATGGATTGGTTTTACAGTTTGCCAGACACATAGACGCGCTGA
GTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAG
TACCGGACACATTGACGCTTTGAGTCAGGAAAGACACATACTGAAACCTC
ACAGGTTGATTTGTATTGGAGATTGCCAGACACCTAGACGTGTTGAGTGA
GGATAGCTGCATACTGAAACCTCACAGGTTGACTTGTATTGGATATTGCC
GGACACATAGACGCGCTGAGTGGGGATAGCTACATACTGAAGCCTCACGA
GTTGAGTGATGTTGGATAGTGCCAGACACATAGACGCTTTGAGTGAGGAT
GGCTGCCCATTGAGACCTAACAGGTTGAGTGACGTTTGCGACTGCCGGAC
ACATAGACGCATTGAGTGACGAAAGCTGCATACTGAAACCTCACAGGTTG
ATTTGTATTGGAGATTGCCGGACACATTGACGCGCTGAGTAAGGATAGCT
GTACACTGAAAATCCACAGTAGCAATAGTGAGGGGACAATTCGAGGATGC
AGTGCACATAGAACCGACCCCCA
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protein sequence of EsuBft1456_7a-0001

>EsuBft1456_7 ID=EsuBft1456_7|Name=EsuBft1456_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MDAWSEDCLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_228:131789..133132+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1456_7a-0001 ID=EsuBft1456_7a-0001|Name=EsuBft1456_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1344bp|location=Sequence derived from alignment at Scaffold_228:131789..133132+ (Ectocarpus subulatus male Bft15b)
ATGGATGCGTGGAGTGAGGATTGCTTACGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGG
AGATTGCCAGGACACATGACGCGCTGAGTGGGGATAGCTACATACTGAAA
CCTCACAGATGGATTGGTTTTACAGTTTGCCAGACACATAGACGCGCTGA
GTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAG
TACCGGACACATTGACGCTTTGAGTCAGGAAAGACACATACTGAAACCTC
ACAGGTTGATTTGTATTGGAGATTGCCAGACACCTAGACGTGTTGAGTGA
GGATAGCTGCATACTGAAACCTCACAGGTTGACTTGTATTGGATATTGCC
GGACACATAGACGCGCTGAGTGGGGATAGCTACATACTGAAGCCTCACGA
GTTGAGTGATGTTGGATAGTGCCAGACACATAGACGCTTTGAGTGAGGAT
GGCTGCCCATTGAGACCTAACAGGTTGAGTGACGTTTGCGACTGCCGGAC
ACATAGACGCATTGAGTGACGAAAGCTGCATACTGAAACCTCACAGGTTG
ACTTGTATTGGATATTGCCGGACACATAGACGCGCTGAGTGGGGATAGCT
ACATACTGAAGCCTCACGAGTTGAGTGATGTTGGATAGTGCCAGACACAT
AGACGCTTTGAGTGAGGATGGCTGCCCATTGAGACCTAACAGGTTGAGTG
ACGTTTGCGACTGCCGGACACATAGACGCATTGAGTGACGAAAGCTGTAT
ACGGAAAGCTCACAGGTTGATCGGTATCGGAGATTGCCGGACACATAGAC
GCGTTGAGTAAGGATAGCTGTATACTGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGACGTTTGCGACTGCCGGACACATAGACGCATTGAGTGACGAAAGCTGC
ATACTGAAACCTCACAGGTTGATTTGTATTGGAGATTGCCGGACACATTG
ACGCGCTGAGTAAGGATAGCTGTACACTGAAAATCCACAGTAGCAATAGT
GAGGGGACAATTCGAGGATGCAGTGCACATAGAACCGACCCCCA
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Coding sequence (CDS) from alignment at Scaffold_228:131789..133132+

>EsuBft1456_7a-0001 ID=EsuBft1456_7a-0001|Name=EsuBft1456_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_228:131789..133132+ (Ectocarpus subulatus male Bft15b)
ATGGATGCGTGGAGTGAGGATTGCTTACGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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