EsuBft1456_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1456_6a-0001
Unique NameEsuBft1456_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:127075..128814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1456_6
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1346
Hectar predicted targeting categoryother localisation
Evalue2.45e-119
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6aEsuBft1456_6aEctocarpus subulatus male Bft15bgeneScaffold_228 127075..128814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6a-0001EsuBft1456_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 127097..128792 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6a-0001-exonagat-exon-78426Ectocarpus subulatus male Bft15bexonScaffold_228 127075..127383 +
EsuBft1456_6a-0001-exonagat-exon-78429Ectocarpus subulatus male Bft15bexonScaffold_228 127424..127697 +
EsuBft1456_6a-0001-exonagat-exon-78427Ectocarpus subulatus male Bft15bexonScaffold_228 127929..128058 +
EsuBft1456_6a-0001-exonEsuBft1456_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 128107..128693 +
EsuBft1456_6a-0001-exonagat-exon-78428Ectocarpus subulatus male Bft15bexonScaffold_228 128769..128814 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6a-0001-exonagat-five_prime_utr-2643Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 127075..127096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6a-0001-cdsEsuBft1456_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 127097..127383 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_6a-0001-exonagat-three_prime_utr-4030Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 128793..128814 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1346bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGATCACACGATTGAACACATGTTCTGTAAGCTGCTGAACGATAGGA
CAGTGGGAATACTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGAT
TTCCGAAAGAAGACGGGGTGCGTAGACCACGTATTCACAGTAGGGAGAAT
CATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGGACTGCCTTTTCCTGG
ACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAA
CTGTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGATGAT
GACAAGAGTATTCTTCGACATTGAGCGAGGGGTCCCACAAGGTTGCACGC
TGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTA
GAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGGCACGGAAACGTCGGTTTC
AGGAATGCTGTTTGCGGATGAATTTGTCGGAATGTCGGACACCCCTGAGG
GGCTGCAACTGCAAATTGACGCGGCGAAGGAGTTTACTGATAGGTGGAGA
TTGTCTGCCAGCGTTAAGAAGAGTGCCGTCATGAGCGTAATCGTACCGCC
GCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAG
AACTCGAGGCGGCGGCGCAGATGAAAGCAGCGAAAATCATCCTTGGATGC
TCCAAGCGCACAAGAAGAGACGCAAGGAAGCTGACATGGCAGTTTCGCAT
GTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATAGTATTGGAGGCGAAGT
GGGCAAACGATAAGAGGAGTAGACAACCCACGGAATGGGTCAAGGTTGTA
GAGGACGTATGGAAGGGGTTCGACATCGACGAAGATGAAACGCTGGAAAC
GGAGGGTCTAAAGGGGTTCAAGGAGAAGATACCTGTTGGTTGTGCCGAGA
GAGAAGAACAGAATCCAAGGAAAGAATCCGAGGATAAAGAGGGACTAGAA
GTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGATTACCTACATGA
ACCAACGGATGCAAGGACAAAGCTTAAGGTCAAATTCAGGACCGGGGACA
TAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGAC
GACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGT
AGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTG
AGCTGGGAAAAATAGATGNGACGTCAGTTGTACGACGAGGAGAGGGAAGT
GACGGTAGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGA
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protein sequence of EsuBft1456_6a-0001

>EsuBft1456_6 ID=EsuBft1456_6|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MFCKLLNDRTVGILEKEHSISEGQADFRKKTGCVDHVFTVGRIIQGRKRA
GKPTDCLFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKMMTRVFFDI
ERGVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGGTETSVSGMLFADE
FVGMSDTPEGLQLQIDAAKEFTDRWRLSASVKKSAVMSVIVPPLEYAGEV
WEGNKKVVKELEAAAQMKAAKIILGCSKRTRRDARKLTWQFRMCGMGEER
LPRIVLEAKWANDKRSRQPTEWVKVVEDVWKGFDIDEDETLETEGLKGFK
EKIPVGCAEREEQNPRKESEDKEGLEVYGMLKEGIGFKDYLHEPTDARTK
LKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECEDRVHVVAECPLY
KKEREVYVTELGKIDXTSVVRRGEGSDGSCTGE
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mRNA from alignment at Scaffold_228:127075..128814+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1740bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)
GGGGGATCACACGATTGAACACATGTTCTGTAAGCTGCTGAACGATAGGA
CAGTGGGAATACTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGAT
TTCCGAAAGAAGACGGGGTGCGTAGACCACGTATTCACAGTAGGGAGAAT
CATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGGACTGCCTTTTCCTGG
ACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAA
CTGTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGATGAT
GACAAGAGTGTACGAAAAGCGCGGTCATGTTAGACGGAGAGCTGTCTAGA
TTCTTCGACATTGAGCGAGGGGTCCCACAAGGTTGCACGCTGTCCCCAAC
ATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCC
GGAAGGGAGTAAAAGTAGGGGGCACGGAAACGTCGGTTTCAGGAATGCTG
TTTGCGGATGAATTTGTCGGAATGTCGGACACCCCTGAGGGGCTGCAACT
GCAAATTGACGCGGCGAAGGAGTTTACTGATAGGTGGAGATTGTCTGCCA
GCGTTAAGAAGAGTGCCGTCATGGTATGCAACGAGGACAGGGAGGCATAG
ATGGAAATGGGGGATCGAGGAGATTGCAGTAGTGGACCAATAAAAACACC
TCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAG
GTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATNTGCAT
CCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTT
GAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAG
GAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGGCGCAGATGAAAGCA
GCGAAAATCATCCTTGGATGCTCCAAGCGCACAAGTAATGAAGGTGTCAG
GGCATAATTGGGGATCCAATCCCTAGGGTCAGGAAGAGACGCAAGGAAGC
TGACATGGCAGTTTCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGA
ATAGTATTGGAGGCGAAGTGGGCAAACGATAAGAGGAGTAGACAACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCGACATCGACG
AAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGAGAAGATA
CCTGTTGGTTGTGCCGAGAGAGAAGAACAGAATCCAAGGAAAGAATCCGA
GGATAAAGAGGGACTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGT
TCAAGGATTACCTACATGAACCAACGGATGCAAGGACAAAGCTTAAGGTC
AAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAG
GACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAAT
GCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAG
AGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGNGACGTCAGTTGT
ACGACGAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGAAGGG
AGGTACAGTGAGATGTTTGCTGAGGCACGGAATAGAGAGTACAGGACGGT
AGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGA
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Coding sequence (CDS) from alignment at Scaffold_228:127075..128814+

>EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)
ATGTTCTGTAAGCTGCTGAACGATAGGACAGTGGGAATACTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGATTTCCGAAAGAAGACGGGGTGCG
TAGACCACGTATTCACAGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGGACTGCCTTTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAGTACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGATGATGACAAGAGTATTCTTCGACATT
GAGCGAGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGT
GTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAA
AAGTAGGGGGCACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGAA
TTTGTCGGAATGTCGGACACCCCTGAGGGGCTGCAACTGCAAATTGACGC
GGCGAAGGAGTTTACTGATAGGTGGAGATTGTCTGCCAGCGTTAAGAAGA
GTGCCGTCATGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTA
TGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGGCGCAGAT
GAAAGCAGCGAAAATCATCCTTGGATGCTCCAAGCGCACAAGAAGAGACG
CAAGGAAGCTGACATGGCAGTTTCGCATGTGCGGGATGGGAGAGGAGAGG
TTGCCGAGAATAGTATTGGAGGCGAAGTGGGCAAACGATAAGAGGAGTAG
ACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCG
ACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAG
GAGAAGATACCTGTTGGTTGTGCCGAGAGAGAAGAACAGAATCCAAGGAA
AGAATCCGAGGATAAAGAGGGACTAGAAGTGTACGGAATGTTGAAGGAAG
GAATAGGGTTCAAGGATTACCTACATGAACCAACGGATGCAAGGACAAAG
CTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACG
AAGACATAGGACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCG
GCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTAC
AAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGNGAC
GTCAGTTGTACGACGAGGAGAGGGAAGTGACGGTAGCTGTACTGGGGAGT
AG
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