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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft1456_6 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1346 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.45e-119 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1346bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGGGGATCACACGATTGAACACATGTTCTGTAAGCTGCTGAACGATAGGA
CAGTGGGAATACTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGAT
TTCCGAAAGAAGACGGGGTGCGTAGACCACGTATTCACAGTAGGGAGAAT
CATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGGACTGCCTTTTCCTGG
ACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAA
CTGTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGATGAT
GACAAGAGTATTCTTCGACATTGAGCGAGGGGTCCCACAAGGTTGCACGC
TGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTA
GAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGGCACGGAAACGTCGGTTTC
AGGAATGCTGTTTGCGGATGAATTTGTCGGAATGTCGGACACCCCTGAGG
GGCTGCAACTGCAAATTGACGCGGCGAAGGAGTTTACTGATAGGTGGAGA
TTGTCTGCCAGCGTTAAGAAGAGTGCCGTCATGAGCGTAATCGTACCGCC
GCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAG
AACTCGAGGCGGCGGCGCAGATGAAAGCAGCGAAAATCATCCTTGGATGC
TCCAAGCGCACAAGAAGAGACGCAAGGAAGCTGACATGGCAGTTTCGCAT
GTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATAGTATTGGAGGCGAAGT
GGGCAAACGATAAGAGGAGTAGACAACCCACGGAATGGGTCAAGGTTGTA
GAGGACGTATGGAAGGGGTTCGACATCGACGAAGATGAAACGCTGGAAAC
GGAGGGTCTAAAGGGGTTCAAGGAGAAGATACCTGTTGGTTGTGCCGAGA
GAGAAGAACAGAATCCAAGGAAAGAATCCGAGGATAAAGAGGGACTAGAA
GTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGATTACCTACATGA
ACCAACGGATGCAAGGACAAAGCTTAAGGTCAAATTCAGGACCGGGGACA
TAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGAC
GACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGT
AGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTG
AGCTGGGAAAAATAGATGNGACGTCAGTTGTACGACGAGGAGAGGGAAGT
GACGGTAGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGA back to topprotein sequence of EsuBft1456_6a-0001 >EsuBft1456_6 ID=EsuBft1456_6|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MFCKLLNDRTVGILEKEHSISEGQADFRKKTGCVDHVFTVGRIIQGRKRA
GKPTDCLFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKMMTRVFFDI
ERGVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGGTETSVSGMLFADE
FVGMSDTPEGLQLQIDAAKEFTDRWRLSASVKKSAVMSVIVPPLEYAGEV
WEGNKKVVKELEAAAQMKAAKIILGCSKRTRRDARKLTWQFRMCGMGEER
LPRIVLEAKWANDKRSRQPTEWVKVVEDVWKGFDIDEDETLETEGLKGFK
EKIPVGCAEREEQNPRKESEDKEGLEVYGMLKEGIGFKDYLHEPTDARTK
LKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECEDRVHVVAECPLY
KKEREVYVTELGKIDXTSVVRRGEGSDGSCTGE back to topmRNA from alignment at Scaffold_228:127075..128814+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1740bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)
GGGGGATCACACGATTGAACACATGTTCTGTAAGCTGCTGAACGATAGGA
CAGTGGGAATACTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGAT
TTCCGAAAGAAGACGGGGTGCGTAGACCACGTATTCACAGTAGGGAGAAT
CATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGGACTGCCTTTTCCTGG
ACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAAACAA
CTGTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGATGAT
GACAAGAGTGTACGAAAAGCGCGGTCATGTTAGACGGAGAGCTGTCTAGA
TTCTTCGACATTGAGCGAGGGGTCCCACAAGGTTGCACGCTGTCCCCAAC
ATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCC
GGAAGGGAGTAAAAGTAGGGGGCACGGAAACGTCGGTTTCAGGAATGCTG
TTTGCGGATGAATTTGTCGGAATGTCGGACACCCCTGAGGGGCTGCAACT
GCAAATTGACGCGGCGAAGGAGTTTACTGATAGGTGGAGATTGTCTGCCA
GCGTTAAGAAGAGTGCCGTCATGGTATGCAACGAGGACAGGGAGGCATAG
ATGGAAATGGGGGATCGAGGAGATTGCAGTAGTGGACCAATAAAAACACC
TCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAG
GTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATNTGCAT
CCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTT
GAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAG
GAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGGCGCAGATGAAAGCA
GCGAAAATCATCCTTGGATGCTCCAAGCGCACAAGTAATGAAGGTGTCAG
GGCATAATTGGGGATCCAATCCCTAGGGTCAGGAAGAGACGCAAGGAAGC
TGACATGGCAGTTTCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGA
ATAGTATTGGAGGCGAAGTGGGCAAACGATAAGAGGAGTAGACAACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCGACATCGACG
AAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGAGAAGATA
CCTGTTGGTTGTGCCGAGAGAGAAGAACAGAATCCAAGGAAAGAATCCGA
GGATAAAGAGGGACTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGT
TCAAGGATTACCTACATGAACCAACGGATGCAAGGACAAAGCTTAAGGTC
AAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAG
GACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAAT
GCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAG
AGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGNGACGTCAGTTGT
ACGACGAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGAAGGG
AGGTACAGTGAGATGTTTGCTGAGGCACGGAATAGAGAGTACAGGACGGT
AGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGA back to topCoding sequence (CDS) from alignment at Scaffold_228:127075..128814+ >EsuBft1456_6a-0001 ID=EsuBft1456_6a-0001|Name=EsuBft1456_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_228:127075..128814+ (Ectocarpus subulatus male Bft15b)
ATGTTCTGTAAGCTGCTGAACGATAGGACAGTGGGAATACTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGATTTCCGAAAGAAGACGGGGTGCG
TAGACCACGTATTCACAGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGGACTGCCTTTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAGTACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGATGATGACAAGAGTATTCTTCGACATT
GAGCGAGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGT
GTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAA
AAGTAGGGGGCACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGAA
TTTGTCGGAATGTCGGACACCCCTGAGGGGCTGCAACTGCAAATTGACGC
GGCGAAGGAGTTTACTGATAGGTGGAGATTGTCTGCCAGCGTTAAGAAGA
GTGCCGTCATGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTA
TGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGGCGCAGAT
GAAAGCAGCGAAAATCATCCTTGGATGCTCCAAGCGCACAAGAAGAGACG
CAAGGAAGCTGACATGGCAGTTTCGCATGTGCGGGATGGGAGAGGAGAGG
TTGCCGAGAATAGTATTGGAGGCGAAGTGGGCAAACGATAAGAGGAGTAG
ACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCG
ACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAG
GAGAAGATACCTGTTGGTTGTGCCGAGAGAGAAGAACAGAATCCAAGGAA
AGAATCCGAGGATAAAGAGGGACTAGAAGTGTACGGAATGTTGAAGGAAG
GAATAGGGTTCAAGGATTACCTACATGAACCAACGGATGCAAGGACAAAG
CTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACG
AAGACATAGGACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCG
GCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTAC
AAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGNGAC
GTCAGTTGTACGACGAGGAGAGGGAAGTGACGGTAGCTGTACTGGGGAGT
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