EsuBft1456_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1456_2a-0001
Unique NameEsuBft1456_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:86995..89647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1456_2
Protein domainsIPR006912
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length188
Hectar predicted targeting categoryother localisation
Evalue1.85e-33
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2aEsuBft1456_2aEctocarpus subulatus male Bft15bgeneScaffold_228 86995..89647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2a-0001-exonagat-exon-78420Ectocarpus subulatus male Bft15bexonScaffold_228 86995..88712 -
EsuBft1456_2a-0001-exonEsuBft1456_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 89481..89647 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2a-0001-exonagat-three_prime_utr-4027Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 86995..88277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2a-0001-cdsEsuBft1456_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 88278..88712 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2a-0001-exonagat-five_prime_utr-2642Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 89595..89647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1456_2a-0001EsuBft1456_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 88278..89594 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1885bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTTCCCCGGCGCCCAGAACGACAAGACCATCATCAAATTCGACAAGTTC
GCGATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAA
GGGCGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGG
ACGGCGGATATCACAACTGGAAGCAGCTCCAGAGTCCGATCAGGGCGCCA
TCAAACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGAGCGTCCGCAA
GGACTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTCAGGATCTGCA
AGATGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACATCTTCTTC
ACGTGCATCATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCT
CTTGGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACAAAA
ACATCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCACGAGGATGCA
GTCGTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGAAGTTGGTGAC
CAACTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGT
GATGACCCGTGGGAAGTCACATGGTGCTATGTTGATGGCGGGGAGGTAGG
GGGGCGGGGGGGCGTGTGGCAGGCGTTGTCCGCCCCTTCGGCTGTAATTA
GTGGCACTTTTTTTTTCCCCCGTTAAAGACCACGTCCTTCTCCGCCCCTC
CGTCGTCAGCATCGTCATCTTTCGTTTTTGGTCCTTCTTGCCAAGTCTTG
CCTCTGCCTTTGCCTGGGCCTTGTTGATACTTTGCCGTGTTATTGTTGTC
TCCTCGTCGTATGTGATCTCTATTATTATTTCGTATTTGGCCTGTTTTCG
ATTCGCCTTTCCGCGGCTTGCGCGTCTTGGCTCTTAGCATACTACAACTG
TCTGTATTCTTGCGTATTGTCATCAGATTTGGCATTTGTGTCTCGGTGTA
CTTTCTTTTCTCTGTCCATCTTTGCACCTTTTTGCGTGATGGGTGTGGAA
CAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCTCTTCTGGAGCAGGACTGT
CTTTTGTGTGCTTGCTCTTCGCCACATTTATTATTGTGCCCCGAGGGGTT
AGCCCCATCGGGTTTCAGATTGTTTTAGTATCATGACGCGTGCGTATAAT
AGTTTTGTTTATTTTCTTTGCGGTTGCGACTGTATCCAAGTGTGATTACA
GGCTCCGTGGAGTTTCCTTTGCCTTTTGCGTTGCCTTGTTGGGACCTTGC
GTTTGCCGTATTGTTGTTGTCTCCTCGTAATCGTATCTCGATATGTTTTT
TTTTTCTTTCGTGTCTAGCCTGTTTTCGCTTCCCTCGTCCGCGGCTTGCG
CGTCTTCGCCCTTCGCATGCAACTGTCGGCGTGTCTTGGGTGTCTCGATG
GATTTACTTTTCTCGGTCCATCCTTGCACCTTCTTTCAACTAACCTTATT
TTTTATTCTGACGGGTGCGGGAAGCCTCTAGGCTATGTAGCCGGAGCTTC
CTTCGCTCTGCTGGCGGAGGACTGTTTTTTTCGCAGCATTATTTTTGTGT
CCCGATTAGACTCAGCACGGTTCGGTTTGTGTTAGCATCGCATGACGCGT
GCGCACAATAATTTTGTTTCTTTTTTTTGCGGGGTCGAGTGTACCCACAT
GTGTGGCCACAGGCTCCAACGGATGTTTTGGAAAAGAGAGCTACAGCAGT
ACATGCCACGACACCGAAAAACGAAACGTGCACCTGCACAATTTGTGGTT
TAGTGGTCCGGCAGGTTAAAACTTGTCATGCACGTCATGTTGTGTGCAGG
GTGGCGAAACACCGGTACTGCTGTGTTGGCCCGTA
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protein sequence of EsuBft1456_2a-0001

>EsuBft1456_2 ID=EsuBft1456_2|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MAVRNGWYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPS
NKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFT
CIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAV
VECDDGFDALRQKLVTNFAYRWGQGTVGWKRS
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mRNA from alignment at Scaffold_228:86995..89647-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2653bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)
GCTTCCCCGGCGCCCAGAACGACAAGACCATCATCAAATTCGACAAGTTC
GCGATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAA
GGGCGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGG
ACGGCGGATATCACAACGTGAGCGGGCTCGTGTTCCACCGAATTTGTAGT
GCAGAATGTCTTTCTTTGCACTCGGCGCGCGCGCAAGGTTTGGTGTTCCG
TTAGCTAGCATTAAGTAGCGTTTAGGAACAGGAGACGAAACAACAGAGAG
TCGCTACTGCTGTGCCTTGAAAACTACAGATCTTGGCCCATGTCGCTTCC
CCAACGTGCTGTGGTACCGGACAGGGGTTGCATTTGTTCAATTTCGGATG
TGTTTTCATGTATATCACTGCACGCGTTCGCTACGGCAGTTTTGCGTTAT
ATACCGTAGTTTGGTCGCTGCTCCCTCTGGCAGGTGCTTTTTTTTTGGGT
GGATTGACAGACAGACGCTGTATATGCAAAGGTGCCTCCAAAAAAAAAGA
GACGCCCAGAGGGGTCCGCGCGGTCCCCGCAAGATGTCAGTGTTAAAACG
GTTCGGCAGTGTGAATTGACAACCGACAATTTGGATGCCAGCCAATGCTT
CCACCGAAGCGTGTCTTCGTACGTGCTTGTCTGCCTGCTTGTAAGCGAGT
TCGTGTACCTGTTGGCTTTCCCCCCGTGACGATGGTGGGGGAGACTGAAC
CCCCCCTTGTGTAAATTTCGGAATCTCACGGTCGTCGTCAGGGCGGAATG
TGATGGTGGTTGATGTGCTGTTCTGCGGTAATAAACAGCGGTCCCCATGT
GCGTCTTCAAGGCTTGACTCAATTGTCGTACCCTTAACATGATCCCCACG
GCCCGCCCACCCGCCATGGCTCCCTCCTTGCTCAGTGGAAGCAGCTCCAG
AGTCCGATCAGGGCGCCATCAAACAAGGCCGAGTCAGGGTTCAAGAGACA
GCTCGAGAGCGTCCGCAAGGACTCGGAGTGCTGCTTCGGCGTCGTCAAGG
GGCGGTTCAGGATCTGCAAGATGCAGTTCCTCTACAGGAAGAAAGAGAGG
ATCGACAACATCTTCTTCACGTGCATCATACTGCACAACATGCTTCTCGC
CTACGACGGGATCGAGCTCTTGGAGCCGGACTGCGACTGGGCCGGAGCGG
ACGGCGACCTCGACAAAAACATCGAGCACCCTGTAGTGCGGATGAGTGCG
CCCACGCACGAGGATGCAGTCGTGGAGTGTGATGACGGCTTCGACGCATT
GAGGCAGAAGTTGGTGACCAACTTCGCTTACCGATGGGGACAGGGGACCG
TTGGGTGGAAGAGGTCGTGATGACCCGTGGGAAGTCACATGGTGCTATGT
TGATGGCGGGGAGGTAGGGGGGCGGGGGGGCGTGTGGCAGGCGTTGTCCG
CCCCTTCGGCTGTAATTAGTGGCACTTTTTTTTTCCCCCGTTAAAGACCA
CGTCCTTCTCCGCCCCTCCGTCGTCAGCATCGTCATCTTTCGTTTTTGGT
CCTTCTTGCCAAGTCTTGCCTCTGCCTTTGCCTGGGCCTTGTTGATACTT
TGCCGTGTTATTGTTGTCTCCTCGTCGTATGTGATCTCTATTATTATTTC
GTATTTGGCCTGTTTTCGATTCGCCTTTCCGCGGCTTGCGCGTCTTGGCT
CTTAGCATACTACAACTGTCTGTATTCTTGCGTATTGTCATCAGATTTGG
CATTTGTGTCTCGGTGTACTTTCTTTTCTCTGTCCATCTTTGCACCTTTT
TGCGTGATGGGTGTGGAACAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCT
CTTCTGGAGCAGGACTGTCTTTTGTGTGCTTGCTCTTCGCCACATTTATT
ATTGTGCCCCGAGGGGTTAGCCCCATCGGGTTTCAGATTGTTTTAGTATC
ATGACGCGTGCGTATAATAGTTTTGTTTATTTTCTTTGCGGTTGCGACTG
TATCCAAGTGTGATTACAGGCTCCGTGGAGTTTCCTTTGCCTTTTGCGTT
GCCTTGTTGGGACCTTGCGTTTGCCGTATTGTTGTTGTCTCCTCGTAATC
GTATCTCGATATGTTTTTTTTTTCTTTCGTGTCTAGCCTGTTTTCGCTTC
CCTCGTCCGCGGCTTGCGCGTCTTCGCCCTTCGCATGCAACTGTCGGCGT
GTCTTGGGTGTCTCGATGGATTTACTTTTCTCGGTCCATCCTTGCACCTT
CTTTCAACTAACCTTATTTTTTATTCTGACGGGTGCGGGAAGCCTCTAGG
CTATGTAGCCGGAGCTTCCTTCGCTCTGCTGGCGGAGGACTGTTTTTTTC
GCAGCATTATTTTTGTGTCCCGATTAGACTCAGCACGGTTCGGTTTGTGT
TAGCATCGCATGACGCGTGCGCACAATAATTTTGTTTCTTTTTTTTGCGG
GGTCGAGTGTACCCACATGTGTGGCCACAGGCTCCAACGGATGTTTTGGA
AAAGAGAGCTACAGCAGTACATGCCACGACACCGAAAAACGAAACGTGCA
CCTGCACAATTTGTGGTTTAGTGGTCCGGCAGGTTAAAACTTGTCATGCA
CGTCATGTTGTGTGCAGGGTGGCGAAACACCGGTACTGCTGTGTTGGCCC
GTA
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Coding sequence (CDS) from alignment at Scaffold_228:86995..89647-

>EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)
ATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAAGGG
CGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGGACG
GCGGATATCACAACTGGAAGCAGCTCCAGAGTCCGATCAGGGCGCCATCA
AACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGAGCGTCCGCAAGGA
CTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTCAGGATCTGCAAGA
TGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACATCTTCTTCACG
TGCATCATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCTCTT
GGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACAAAAACA
TCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCACGAGGATGCAGTC
GTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGAAGTTGGTGACCAA
CTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGTGA
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