Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft1456_2 |
| Protein domains | IPR006912 |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 188 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.85e-33 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1885bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTTCCCCGGCGCCCAGAACGACAAGACCATCATCAAATTCGACAAGTTC
GCGATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAA
GGGCGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGG
ACGGCGGATATCACAACTGGAAGCAGCTCCAGAGTCCGATCAGGGCGCCA
TCAAACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGAGCGTCCGCAA
GGACTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTCAGGATCTGCA
AGATGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACATCTTCTTC
ACGTGCATCATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCT
CTTGGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACAAAA
ACATCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCACGAGGATGCA
GTCGTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGAAGTTGGTGAC
CAACTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGT
GATGACCCGTGGGAAGTCACATGGTGCTATGTTGATGGCGGGGAGGTAGG
GGGGCGGGGGGGCGTGTGGCAGGCGTTGTCCGCCCCTTCGGCTGTAATTA
GTGGCACTTTTTTTTTCCCCCGTTAAAGACCACGTCCTTCTCCGCCCCTC
CGTCGTCAGCATCGTCATCTTTCGTTTTTGGTCCTTCTTGCCAAGTCTTG
CCTCTGCCTTTGCCTGGGCCTTGTTGATACTTTGCCGTGTTATTGTTGTC
TCCTCGTCGTATGTGATCTCTATTATTATTTCGTATTTGGCCTGTTTTCG
ATTCGCCTTTCCGCGGCTTGCGCGTCTTGGCTCTTAGCATACTACAACTG
TCTGTATTCTTGCGTATTGTCATCAGATTTGGCATTTGTGTCTCGGTGTA
CTTTCTTTTCTCTGTCCATCTTTGCACCTTTTTGCGTGATGGGTGTGGAA
CAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCTCTTCTGGAGCAGGACTGT
CTTTTGTGTGCTTGCTCTTCGCCACATTTATTATTGTGCCCCGAGGGGTT
AGCCCCATCGGGTTTCAGATTGTTTTAGTATCATGACGCGTGCGTATAAT
AGTTTTGTTTATTTTCTTTGCGGTTGCGACTGTATCCAAGTGTGATTACA
GGCTCCGTGGAGTTTCCTTTGCCTTTTGCGTTGCCTTGTTGGGACCTTGC
GTTTGCCGTATTGTTGTTGTCTCCTCGTAATCGTATCTCGATATGTTTTT
TTTTTCTTTCGTGTCTAGCCTGTTTTCGCTTCCCTCGTCCGCGGCTTGCG
CGTCTTCGCCCTTCGCATGCAACTGTCGGCGTGTCTTGGGTGTCTCGATG
GATTTACTTTTCTCGGTCCATCCTTGCACCTTCTTTCAACTAACCTTATT
TTTTATTCTGACGGGTGCGGGAAGCCTCTAGGCTATGTAGCCGGAGCTTC
CTTCGCTCTGCTGGCGGAGGACTGTTTTTTTCGCAGCATTATTTTTGTGT
CCCGATTAGACTCAGCACGGTTCGGTTTGTGTTAGCATCGCATGACGCGT
GCGCACAATAATTTTGTTTCTTTTTTTTGCGGGGTCGAGTGTACCCACAT
GTGTGGCCACAGGCTCCAACGGATGTTTTGGAAAAGAGAGCTACAGCAGT
ACATGCCACGACACCGAAAAACGAAACGTGCACCTGCACAATTTGTGGTT
TAGTGGTCCGGCAGGTTAAAACTTGTCATGCACGTCATGTTGTGTGCAGG
GTGGCGAAACACCGGTACTGCTGTGTTGGCCCGTA back to topprotein sequence of EsuBft1456_2a-0001 >EsuBft1456_2 ID=EsuBft1456_2|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MAVRNGWYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPS
NKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFT
CIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAV
VECDDGFDALRQKLVTNFAYRWGQGTVGWKRS back to topmRNA from alignment at Scaffold_228:86995..89647- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2653bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)
GCTTCCCCGGCGCCCAGAACGACAAGACCATCATCAAATTCGACAAGTTC
GCGATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAA
GGGCGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGG
ACGGCGGATATCACAACGTGAGCGGGCTCGTGTTCCACCGAATTTGTAGT
GCAGAATGTCTTTCTTTGCACTCGGCGCGCGCGCAAGGTTTGGTGTTCCG
TTAGCTAGCATTAAGTAGCGTTTAGGAACAGGAGACGAAACAACAGAGAG
TCGCTACTGCTGTGCCTTGAAAACTACAGATCTTGGCCCATGTCGCTTCC
CCAACGTGCTGTGGTACCGGACAGGGGTTGCATTTGTTCAATTTCGGATG
TGTTTTCATGTATATCACTGCACGCGTTCGCTACGGCAGTTTTGCGTTAT
ATACCGTAGTTTGGTCGCTGCTCCCTCTGGCAGGTGCTTTTTTTTTGGGT
GGATTGACAGACAGACGCTGTATATGCAAAGGTGCCTCCAAAAAAAAAGA
GACGCCCAGAGGGGTCCGCGCGGTCCCCGCAAGATGTCAGTGTTAAAACG
GTTCGGCAGTGTGAATTGACAACCGACAATTTGGATGCCAGCCAATGCTT
CCACCGAAGCGTGTCTTCGTACGTGCTTGTCTGCCTGCTTGTAAGCGAGT
TCGTGTACCTGTTGGCTTTCCCCCCGTGACGATGGTGGGGGAGACTGAAC
CCCCCCTTGTGTAAATTTCGGAATCTCACGGTCGTCGTCAGGGCGGAATG
TGATGGTGGTTGATGTGCTGTTCTGCGGTAATAAACAGCGGTCCCCATGT
GCGTCTTCAAGGCTTGACTCAATTGTCGTACCCTTAACATGATCCCCACG
GCCCGCCCACCCGCCATGGCTCCCTCCTTGCTCAGTGGAAGCAGCTCCAG
AGTCCGATCAGGGCGCCATCAAACAAGGCCGAGTCAGGGTTCAAGAGACA
GCTCGAGAGCGTCCGCAAGGACTCGGAGTGCTGCTTCGGCGTCGTCAAGG
GGCGGTTCAGGATCTGCAAGATGCAGTTCCTCTACAGGAAGAAAGAGAGG
ATCGACAACATCTTCTTCACGTGCATCATACTGCACAACATGCTTCTCGC
CTACGACGGGATCGAGCTCTTGGAGCCGGACTGCGACTGGGCCGGAGCGG
ACGGCGACCTCGACAAAAACATCGAGCACCCTGTAGTGCGGATGAGTGCG
CCCACGCACGAGGATGCAGTCGTGGAGTGTGATGACGGCTTCGACGCATT
GAGGCAGAAGTTGGTGACCAACTTCGCTTACCGATGGGGACAGGGGACCG
TTGGGTGGAAGAGGTCGTGATGACCCGTGGGAAGTCACATGGTGCTATGT
TGATGGCGGGGAGGTAGGGGGGCGGGGGGGCGTGTGGCAGGCGTTGTCCG
CCCCTTCGGCTGTAATTAGTGGCACTTTTTTTTTCCCCCGTTAAAGACCA
CGTCCTTCTCCGCCCCTCCGTCGTCAGCATCGTCATCTTTCGTTTTTGGT
CCTTCTTGCCAAGTCTTGCCTCTGCCTTTGCCTGGGCCTTGTTGATACTT
TGCCGTGTTATTGTTGTCTCCTCGTCGTATGTGATCTCTATTATTATTTC
GTATTTGGCCTGTTTTCGATTCGCCTTTCCGCGGCTTGCGCGTCTTGGCT
CTTAGCATACTACAACTGTCTGTATTCTTGCGTATTGTCATCAGATTTGG
CATTTGTGTCTCGGTGTACTTTCTTTTCTCTGTCCATCTTTGCACCTTTT
TGCGTGATGGGTGTGGAACAGCCTCTAGTTTAGGCGGAGTTTTCTTCCCT
CTTCTGGAGCAGGACTGTCTTTTGTGTGCTTGCTCTTCGCCACATTTATT
ATTGTGCCCCGAGGGGTTAGCCCCATCGGGTTTCAGATTGTTTTAGTATC
ATGACGCGTGCGTATAATAGTTTTGTTTATTTTCTTTGCGGTTGCGACTG
TATCCAAGTGTGATTACAGGCTCCGTGGAGTTTCCTTTGCCTTTTGCGTT
GCCTTGTTGGGACCTTGCGTTTGCCGTATTGTTGTTGTCTCCTCGTAATC
GTATCTCGATATGTTTTTTTTTTCTTTCGTGTCTAGCCTGTTTTCGCTTC
CCTCGTCCGCGGCTTGCGCGTCTTCGCCCTTCGCATGCAACTGTCGGCGT
GTCTTGGGTGTCTCGATGGATTTACTTTTCTCGGTCCATCCTTGCACCTT
CTTTCAACTAACCTTATTTTTTATTCTGACGGGTGCGGGAAGCCTCTAGG
CTATGTAGCCGGAGCTTCCTTCGCTCTGCTGGCGGAGGACTGTTTTTTTC
GCAGCATTATTTTTGTGTCCCGATTAGACTCAGCACGGTTCGGTTTGTGT
TAGCATCGCATGACGCGTGCGCACAATAATTTTGTTTCTTTTTTTTGCGG
GGTCGAGTGTACCCACATGTGTGGCCACAGGCTCCAACGGATGTTTTGGA
AAAGAGAGCTACAGCAGTACATGCCACGACACCGAAAAACGAAACGTGCA
CCTGCACAATTTGTGGTTTAGTGGTCCGGCAGGTTAAAACTTGTCATGCA
CGTCATGTTGTGTGCAGGGTGGCGAAACACCGGTACTGCTGTGTTGGCCC
GTA back to topCoding sequence (CDS) from alignment at Scaffold_228:86995..89647- >EsuBft1456_2a-0001 ID=EsuBft1456_2a-0001|Name=EsuBft1456_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_228:86995..89647- (Ectocarpus subulatus male Bft15b)
ATGGCGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAAGGG
CGAGGACGGAGCGGACATCAAAGAGAAAGGGCCATGGTTGATAGTGGACG
GCGGATATCACAACTGGAAGCAGCTCCAGAGTCCGATCAGGGCGCCATCA
AACAAGGCCGAGTCAGGGTTCAAGAGACAGCTCGAGAGCGTCCGCAAGGA
CTCGGAGTGCTGCTTCGGCGTCGTCAAGGGGCGGTTCAGGATCTGCAAGA
TGCAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACATCTTCTTCACG
TGCATCATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCTCTT
GGAGCCGGACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACAAAAACA
TCGAGCACCCTGTAGTGCGGATGAGTGCGCCCACGCACGAGGATGCAGTC
GTGGAGTGTGATGACGGCTTCGACGCATTGAGGCAGAAGTTGGTGACCAA
CTTCGCTTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGTGA back to top
|