EsuBft1445_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1445_2a-0001
Unique NameEsuBft1445_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:199956..201081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1445_2
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length82
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2aEsuBft1445_2aEctocarpus subulatus male Bft15bgeneScaffold_228 199956..201081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2a-0001EsuBft1445_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 199996..200253 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2a-0001-exonEsuBft1445_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 199956..200572 +
EsuBft1445_2a-0001-exonagat-exon-90194Ectocarpus subulatus male Bft15bexonScaffold_228 200876..201081 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2a-0001-exonagat-five_prime_utr-2586Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 199956..199995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2a-0001-cdsEsuBft1445_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 199996..200253 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1445_2a-0001-exonagat-three_prime_utr-3924Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 200254..200572 +
EsuBft1445_2a-0001-exonagat-three_prime_utr-3925Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 200876..201081 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=823bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGTGTAGCTGAGA
TGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGCATTCGCATCA
AGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGGGACCTTGATT
TTTACCCGCTGGCACTGACGTCTTTTAATTGGTCAGCCGGTTAGCGCGGT
CGATGCTAATAATAAAAACACACACACACATGGTGTCCTCCGCTCTTTGC
ATCAGTGGCTTCCTAGATTCGAGCGAGGGCATGTGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAAAATAAAGGAGGACGCTTCCCACACCCGCCCAAACA
AAAAATCAAAGGGTAACGGTAACGTACCAGCACCAGGCACTACGCACCAG
GGCATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGCAGA
CAGACAGTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCATGT
TACCCAACACAGCAGAGTAGGCAGGGAGGTCATGAAAAAAGGAAACACAG
AAACACAGCACAGAGGCCGAAGG
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protein sequence of EsuBft1445_2a-0001

>EsuBft1445_2 ID=EsuBft1445_2|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MTVGSWECTIIKLGDAAYHDILASAGLEITLLLSSALCISGFLGSGEGMC
VAEMCVYVKENVRVVLAFASSALRIFRILASFQGP
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mRNA from alignment at Scaffold_228:199956..201081+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1126bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)
TGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGATGACTGTTG
GATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACCACGAT
ATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCT
TTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGTGTAGCTGAGA
TGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGCATTCGCATCA
AGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGGGACCTTGATT
TTTACCCGCTGGCACTGACGTCTTTTAATTGGTCAGCCGGTTAGCGCGGT
CGATGCTAATAATAAAAACACACACACACATGGTGTCCTCCGCTCTTTGC
ATCAGTGGCTTCCTAGATTCGAGCGAGGGCATGTGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAAAATAAAGGAGGACGCTTCCCACACCCGCCCAAACA
AAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACGCACCAGGGCATG
GGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGCAGACAGACA
GTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCATGTTACCCA
ACACAGCAGAGTAGGCAGGGAGGTCATGAAANATTTTTTTTGCGAAAAAA
AAACTCCGCTATCGCTCCGTTTTTATTTTCGCACGCGCGCTTCGCGCGCG
GAAAAAACTCCTAACAAAAACAAAAATAAAGGAGGACGCTTCCCACACCC
GCCCAAACAAAAAATCAAAGGGTAACGTACCAGCACCAGGCACTACGCAC
CAGGGCATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGGCAGATGGGC
AGACAGACAGTCAGACGTACAAAAACAAAGGCAACAGCAGAGCGAGATCA
TGTTACCCAACACAGCAGAGTAGGCAGGGAGGTCATGAAAAAAGGAAACA
CAGAAACACAGCACAGAGGCCGAAGG
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Coding sequence (CDS) from alignment at Scaffold_228:199956..201081+

>EsuBft1445_2a-0001 ID=EsuBft1445_2a-0001|Name=EsuBft1445_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_228:199956..201081+ (Ectocarpus subulatus male Bft15b)
ATGACTGTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGC
ATACCACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGT
CCTCCGCTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGT
GTAGCTGAGATGTGTGTCTACGTGAAAGAAAATGTGAGAGTCGTATTGGC
ATTCGCATCAAGCGCATTGCGCATTTTTCGAATTTTGGCCTCCTTCCAGG
GACCTTGA
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