EsuBft1433_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1433_7a-0001
Unique NameEsuBft1433_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:393136..396748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPM6
ProteomeIdEsuBft1433_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length180
Hectar predicted targeting categoryother localisation
Evalue5.31e-65
EggNOG OGsCOG0042@1|root,KOG2334@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K05543
EC1.3.1.91
DescriptiontRNA-dihydrouridine20 synthase activity
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_7aEsuBft1433_7aEctocarpus subulatus male Bft15bgeneScaffold_647 393136..396748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_7a-0001EsuBft1433_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 393136..396040 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_7a-0001-exonEsuBft1433_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 393136..393207 +
EsuBft1433_7a-0001-exonagat-exon-93892Ectocarpus subulatus male Bft15bexonScaffold_647 393779..394036 +
EsuBft1433_7a-0001-exonagat-exon-93893Ectocarpus subulatus male Bft15bexonScaffold_647 394390..394511 +
EsuBft1433_7a-0001-exonagat-exon-93895Ectocarpus subulatus male Bft15bexonScaffold_647 394991..395051 +
EsuBft1433_7a-0001-exonagat-exon-93894Ectocarpus subulatus male Bft15bexonScaffold_647 395360..395419 +
EsuBft1433_7a-0001-exonagat-exon-93896Ectocarpus subulatus male Bft15bexonScaffold_647 395516..396748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_7a-0001-cdsEsuBft1433_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 393136..393207 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_7a-0001-exonagat-three_prime_utr-3837Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 396041..396748 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1433_7a-0001 ID=EsuBft1433_7a-0001|Name=EsuBft1433_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1806bp|location=Sequence derived from alignment at Scaffold_647:393136..396748+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCGCGACCGGCCCTGCTGAACTGCTCCATCGTCAAGCCCGATGG
ACACGTGCTCCCGCTCAAAGAGGGACCCTCCTCGGTCATCCCGCTTGCCC
CCTCCGCTATCGATGCCAAAGGGTGCACCGACTTCCCACGAAACGCCAAC
CTTTCGCTGATAACCAAACAGGTGATTCAGCAGTACCTGCGGGAGTGCTT
TCGGTACGACTCGGTCTACCAGAACGCGAAGTACACCGTGATGGAGATGC
TCACCAAGAGAAGGCATCCGGATCATCTCAAGGTGGACTTTTCTGTAGAG
CTCATGCAGTCTGTGCAGCGAGGGTATAGAGAATCCATCTCCTTGGGCCT
GCCCGGGCGTGCTCCTAGCATGCGCGAGGTAAGGCCGGCGAAGACGTTAG
AGCAGCTGGCGAGGCTTTGGGACGTGGGAACCGACTTCGATGCGGAAAAT
TCGTATACCGATTTGGAGCGTAGGGAAACCCCGCCTGATTGGAAGCCGCT
AGTAGCAGTAGTGGCGCCAAGACTCGCGACTCGTCGGACGCTCCTGACGC
CAAAGCCGCGCGAGGCCGGGGTGAAGTCACCGCTATGGCCGTGGAAATTG
GCGGTAGTGGTAGCACAGGGGCACCCACCACCACTACCGCAGCGATTGCC
CGCTCAACCTGCGCCGGTGGCGGAGATAACTGTGTTGGCGAGGGTGGCGA
CAGGAAGGACGGACGCGGAAGGGCGAGAAGAGGCGCGCCTTCGAGGGAGC
GACCGAGCGGGGGATGGCGAAGCGGGGGGGATCGTGGCGCGATCGGTGGT
TGCTGTTGTGGCCATTGCGAGGGAAGCAAGCCGCGGTGGTGGCGGTGATG
GCGATAGAGATGGAGGTGCTGGGACTGGCAAAGCAGTAGCAGAAGAAGTG
CAACAACCGCAGCAGCAGAGGAGTGGCGGGGTTGCTTGTTCGGAACGAGG
GAGGAGTCATGAGCGAGGAGGAGGAGAAGAAGATGGCAGCTTCTCCGGAG
ATGGTTTACACGCCGAAGAGGGCCTGCGGCAGGCGTGGGTGCCTTGGAAG
CGACCTCGAGAAGAGGAGGAGGAGGAGGAAGAGGCGAGCGCGTTGTAGTA
GTATCTAATAGCTGGCCACACCGCGGTTGCATGCACCGTACGATACGATC
ACAGAGAGCGCGTCAAGTTTGACCCAACAGCGTTCTTTCTGGGGCGCGTT
TGTTTCGACAGGGCCAATTGAATTTTCGCGAGAAGACCACGACTCTCCTC
CTCGCTAGGGAGAGGCCCAAAGACCGCTAAACAGACTGGTGATGAACAGT
GGGAGCAGTGGTCGGGGTTAGGCGACTTGCTTTCAAAATCCAAACTGGTG
AAGGCCAGGCCGAGGTGGGTGGTGACAAATCCGTCCGAGGAGAATTTCCT
CGATTAGAATCGCAGCTTGCCTCTGGCAACCGTGCCGGTCCTCCAAGGGA
TTTTCATTTTGATGTATAGGTGGTATAGAGAGCAGTGAAGAGGTGATTCG
CTAGAAACGTAGTGTGATAAATTGTTGCATCCGTTGGACGACGGTCAGGG
CAAGAAAAAAGCGTTCAGTATACATGTATGGTTTGGGTGGACAACGCCTA
ATAATCAGTCTGATGTAGAGGAAACAGACGAGGATATGATTTTCTGTGCT
GCGCGCAAAACATCGCGAATTGGGTTGTTATGGAATTGGAGCACAACAGA
TGTGACAACCCGCATGCCTTGGACTGAGAGAACGCGTGTTTTCCATGTCT
TCGCATGTATCCAGCGCAAGACTGTCCACACACCACACACACACCACACA
CACACA
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protein sequence of EsuBft1433_7a-0001

>EsuBft1433_7 ID=EsuBft1433_7|Name=EsuBft1433_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=365bp
MLARPALLNCSIVKPDGHVLPLKEGPSSVIPLAPSAIDAKGCTDFPRNAN
LSLITKQVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKVDFSVE
LMQSVQRGYRESISLGLPGRAPSMREVRPAKTLEQLARLWDVGTDFDAEN
SYTDLERRETPPDWKPLVAVVAPRLATRRTLLTPKPREAGVKSPLWPWKL
AVVVAQGHPPPLPQRLPAQPAPVAEITVLARVATGRTDAEGREEARLRGS
DRAGDGEAGGIVARSVVAVVAIAREASRGGGGDGDRDGGAGTGKAVAEEV
QQPQQQRSGGVACSERGRSHERGGGEEDGSFSGDGLHAEEGLRQAWVPWK
RPREEEEEEEEASAL
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mRNA from alignment at Scaffold_647:393136..396748+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1433_7a-0001 ID=EsuBft1433_7a-0001|Name=EsuBft1433_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3613bp|location=Sequence derived from alignment at Scaffold_647:393136..396748+ (Ectocarpus subulatus male Bft15b)
ATGCTGGCGCGACCGGCCCTGCTGAACTGCTCCATCGTCAAGCCCGATGG
ACACGTGCTCCCGCTCAAAGAGGTTAACATACCTCTCGATGAGAACCTGC
AGGAACTGCACCATGCCCTGCGGCACGTGCGACTTAGGTGGAACTCCTGC
TCTGCCCTACTGCCTCGCTGTCCGATGGGCTGGCTGATACAAGACAGCGG
GGGGGAACAACGCCAATTGAACGCGCGCAGCGCTATTTAGTTAGTGCTAC
TGCCGTACATTTGGGGTTTGGAATGCTTTTTGCGGTTTCGCGAACGAACG
ACGTGCGCCAAACCGCGTGTGCGCACAGCTGTGCTGGCAGCTGGTGAAAC
ACCCCACGGCTGCTGGAGACCCTCGATGGTTGATACATCTCTTGTTCGGG
CTGTCGGTTGGGCTGAACAATGCGCCCTTTGTGCGGGAGATTCGGATCAA
AACATCGCGATTGCTTACCCTCATTGCAAAAGCATAGGCAGTAGCCACCA
CGTGTCCCTGTAGTGCGTTGAACCACGGGAACTGCCAAGAACAGAGCATT
CATAACGCCGTGGGCAGACGTGCGAATTATCCACCCTGTTTTTCGATGGA
CATTTTTAATTTCTGCGCCGTACTGGTAAGCAGCAGCTGTCAGGGACCCT
CCTCGGTCATCCCGCTTGCCCCCTCCGCTATCGATGCCAAAGGGTGCACC
GACTTCCCACGAAACGCCAACCTTTCGCTGATAACCAAACAGGTGATTCA
GCAGTACCTGCGGGAGTGCTTTCGGTACGACTCGGTCTACCAGAACGCGA
AGTACACCGTGATGGAGATGCTCACCAAGAGAAGGCATCCGGATCATCTC
AAGGTGGACTTTTCTGTAGAGCTCATGCAGTCTGTGCAGCGAGGGTATAG
AGTATAAAGCACAGCGATGTTGTGGCTGGGTCGGTCAACCCCCGTGATCC
CAATGCCTGTTTGCTCCGGTGAGTTAGCCGGAACCACGGTACACTCGATC
GATCCTGTCGTAGAAGTGCTCTGTCGCATCTGGGTGCTACGGATCCCTTC
GCTGTGGTTCGTTGACTTCTCTTCCCTTCCCTGCGTCGTGGATCGAGCGA
GATCTCCTCCCTGCGAATGCTCGGTGCTCCAACGTTCTTAAACTTCCTTT
CCGTTTCAGCGTTGCCGTTATTCTTCTCTCTCAAGTTGCTCCATGTACAC
TTCGGTAAGCGCCTCCGTTCCCTTTCTCCCCCTCCTGCCGTCTGCTGGAA
TCAGGAATCCATCTCCTTGGGCCTGCCCGGGCGTGCTCCTAGCATGCGCG
AGGTAAGGCCGGCGAAGACGTTAGAGCAGCTGGCGAGGCTTTGGGACGTG
GGAACCGACTTCGATGCGGAAAATTCGTGACTCCCACGCACATTCCTGTT
CTTGGGCTATCAAGCAGATCGCCCCCTCTTGTTGTGAATCACGTCGGGAG
TCCCCCCGTCTAACCCCGTCTACGATGGTGATTCGTGCCACGCTGCTTCT
TCTTCGTTTCAACGCGATCAAGGAAATAGTTGCGTGGAATTTTGTGTCGG
GAGTAGGTCTTGCTCACAGGAGGCCTTAGACTAGAAACGGTGGTGTGCAT
GCTGCAGAACGGAGGGAAGCCGTTTTGGTTGCGGTGTATTTTCTCCATCC
TTCCACCCCATCCCATCCCATCCCACCCTCCGCCCACCCTCCTGACCCCC
GATCGCTCGGACGAAGGAAGCGCGCGGAAGAGCTTGGCGAGGCTAGATCG
ATAGAGCAGGAAGAGCGGGGGACTGTCCACAAGTGAGTCGCGACGATTGA
CCTTCTGCTCTCTTGGCGCCGAGAAGGAACAGCGCGGTTGTGTGTTCGAG
AATAGGTATACCGATTTGGAGCGTAGGGAAACCCCGCCTGATTGGAAGCC
GCTAGTAGCAGTAGTGGTAACGCCGCTGGTTTGCAAGACGCAAGGCGCAA
TGTTGCGGCACTAAACCACGACTTCCGTGTGACACTCTCGTGCACCCCCA
CAACATAAACATAACTAAACAAGAACAAATGCAGCGGTATCACGGGGCTT
TTTGTCATCGTTCTCTGATTGCGTTGATTGTGTCCTACGACTGTTTCTAG
TCTACGCTTGCCCCGCTTTGTTCTTGGTGCTGCTGTTTCATCCCTGCAAA
CACCATCGTCGTGTACAGGTTCGACGACGCGTATTTTCTGGGCACAGAGG
AAGCATGAACAGACAACGCTGTAGGCGCCAAGACTCGCGACTCGTCGGAC
GCTCCTGACGCCAAAGCCGCGCGAGGCCGGGGTGGTAGGGACCGTGGGAA
TGGTGGCGGCGGAAACGGGGGCGTCGAAGCCACCGCTATGGCTGTGGAAA
ATGGCGGTGGCGGCGGAAACGGCGGCGTAGAAGTCACCGCTATGGCCGTG
GAAATTGGCGGTAGTGGTAGCACAGGGGCACCCACCACCACTACCGCAGC
GATTGCCCGCTCAACCTGCGCCGGTGGCGGAGATAACTGTGTTGGCGAGG
GTGGCGACAGGAAGGACGGACGCGGAAGGGCGAGAAGAGGCGCGCCTTCG
AGGGAGCGACCGAGCGGGGGATGGCGAAGCGGGGGGGATCGTGGCGCGAT
CGGTGGTTGCTGTTGTGGCCATTGCGAGGGAAGCAAGCCGCGGTGGTGGC
GGTGATGGCGATAGAGATGGAGGTGCTGGGACTGGCAAAGCAGTAGCAGA
AGAAGTGCAACAACCGCAGCAGCAGAGGAGTGGCGGGGTTGCTTGTTCGG
AACGAGGGAGGAGTCATGAGCGAGGAGGAGGAGAAGAAGATGGCAGCTTC
TCCGGAGATGGTTTACACGCCGAAGAGGGCCTGCGGCAGGCGTGGGTGCC
TTGGAAGCGACCTCGAGAAGAGGAGGAGGAGGAGGAAGAGGCGAGCGCGT
TGTAGTAGTATCTAATAGCTGGCCACACCGCGGTTGCATGCACCGTACGA
TACGATCACAGAGAGCGCGTCAAGTTTGACCCAACAGCGTTCTTTCTGGG
GCGCGTTTGTTTCGACAGGGCCAATTGAATTTTCGCGAGAAGACCACGAC
TCTCCTCCTCGCTAGGGAGAGGCCCAAAGACCGCTAAACAGACTGGTGAT
GAACAGTGGGAGCAGTGGTCGGGGTTAGGCGACTTGCTTTCAAAATCCAA
ACTGGTGAAGGCCAGGCCGAGGTGGGTGGTGACAAATCCGTCCGAGGAGA
ATTTCCTCGATTAGAATCGCAGCTTGCCTCTGGCAACCGTGCCGGTCCTC
CAAGGGATTTTCATTTTGATGTATAGGTGGTATAGAGAGCAGTGAAGAGG
TGATTCGCTAGAAACGTAGTGTGATAAATTGTTGCATCCGTTGGACGACG
GTCAGGGCAAGAAAAAAGCGTTCAGTATACATGTATGGTTTGGGTGGACA
ACGCCTAATAATCAGTCTGATGTAGAGGAAACAGACGAGGATATGATTTT
CTGTGCTGCGCGCAAAACATCGCGAATTGGGTTGTTATGGAATTGGAGCA
CAACAGATGTGACAACCCGCATGCCTTGGACTGAGAGAACGCGTGTTTTC
CATGTCTTCGCATGTATCCAGCGCAAGACTGTCCACACACCACACACACA
CCACACACACACA
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Coding sequence (CDS) from alignment at Scaffold_647:393136..396748+

>EsuBft1433_7a-0001 ID=EsuBft1433_7a-0001|Name=EsuBft1433_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1098bp|location=Sequence derived from alignment at Scaffold_647:393136..396748+ (Ectocarpus subulatus male Bft15b)
ATGCTGGCGCGACCGGCCCTGCTGAACTGCTCCATCGTCAAGCCCGATGG
ACACGTGCTCCCGCTCAAAGAGGGACCCTCCTCGGTCATCCCGCTTGCCC
CCTCCGCTATCGATGCCAAAGGGTGCACCGACTTCCCACGAAACGCCAAC
CTTTCGCTGATAACCAAACAGGTGATTCAGCAGTACCTGCGGGAGTGCTT
TCGGTACGACTCGGTCTACCAGAACGCGAAGTACACCGTGATGGAGATGC
TCACCAAGAGAAGGCATCCGGATCATCTCAAGGTGGACTTTTCTGTAGAG
CTCATGCAGTCTGTGCAGCGAGGGTATAGAGAATCCATCTCCTTGGGCCT
GCCCGGGCGTGCTCCTAGCATGCGCGAGGTAAGGCCGGCGAAGACGTTAG
AGCAGCTGGCGAGGCTTTGGGACGTGGGAACCGACTTCGATGCGGAAAAT
TCGTATACCGATTTGGAGCGTAGGGAAACCCCGCCTGATTGGAAGCCGCT
AGTAGCAGTAGTGGCGCCAAGACTCGCGACTCGTCGGACGCTCCTGACGC
CAAAGCCGCGCGAGGCCGGGGTGAAGTCACCGCTATGGCCGTGGAAATTG
GCGGTAGTGGTAGCACAGGGGCACCCACCACCACTACCGCAGCGATTGCC
CGCTCAACCTGCGCCGGTGGCGGAGATAACTGTGTTGGCGAGGGTGGCGA
CAGGAAGGACGGACGCGGAAGGGCGAGAAGAGGCGCGCCTTCGAGGGAGC
GACCGAGCGGGGGATGGCGAAGCGGGGGGGATCGTGGCGCGATCGGTGGT
TGCTGTTGTGGCCATTGCGAGGGAAGCAAGCCGCGGTGGTGGCGGTGATG
GCGATAGAGATGGAGGTGCTGGGACTGGCAAAGCAGTAGCAGAAGAAGTG
CAACAACCGCAGCAGCAGAGGAGTGGCGGGGTTGCTTGTTCGGAACGAGG
GAGGAGTCATGAGCGAGGAGGAGGAGAAGAAGATGGCAGCTTCTCCGGAG
ATGGTTTACACGCCGAAGAGGGCCTGCGGCAGGCGTGGGTGCCTTGGAAG
CGACCTCGAGAAGAGGAGGAGGAGGAGGAAGAGGCGAGCGCGTTGTAG
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