Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 35128.Thaps11039 |
| ProteomeId | EsuBft1350_5 |
| Protein domains | G3DSA |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2836|Bacillariophyta |
| Length | 143 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.08e-11 |
| EggNOG OGs | KOG2723@1|root,KOG2723@2759|Eukaryota,2XF76@2836|Bacillariophyta |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-08_005080.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Sterile alpha motif. |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1431bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATACCAAGCATTTCC
ACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACGCTGTACCGGTTA
AATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGTGCTTGGGTGCTT
CTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTACGGAGCGCAAAT
CCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGCTCGCGCTCTTTC
GGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAGGAGAGGATGTGG
TGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCCATGATGACTTGG
GGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACTTCCAGCACAAAC
GCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTACGTGCCCGAGGG
ATGCTCATTCCTCGAATACGATGGGATCGATATGGCGGAAACTAAGGGTT
ATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGACGTTCATCGGTTC
GCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGCATCCGCAAG
CGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACAACAGAGATC
CTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACCAGGATCACC
ACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGCTCGACTGGA
CCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGTGGTTAATCA
AAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTACTGCGAATG
AAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACGCGTTGCCGT
CCAGGCCACCGATCGCGAGGCGATCGAGTAG back to topprotein sequence of EsuBft1350_5a-0001 >EsuBft1350_5 ID=EsuBft1350_5|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MPNPLQKHDMFSATRRAHLEELERRESHEEWEGFVKGWHKLEQLETEWGR
VRSTFVDDTLTLNVGGSNVDVSRADLHRLPALSEVWKLANLFDSDWDERL
PRDANGLMVLDESPVCFKHLVDALGGALPTDEQAYLPYVSNALGVPSPTR
VPRRRVDSEGSVMLGVGDLLYRASRDGWDTKHFHTRCGDDSPMTVTLYRL
NDASNRKGLGCSVLGCFSSVPGTPPRDGSTERKSSPGGFVFILTDGSRSF
GPTKLELDPRNARRGCGVVVLGEDRMPSFHDDLGILHEEERHRSRTSSTN
AKYRLWTDSDAFYVPEGCSFLEYDGIDMAETKGYRVWSAEVERGDDVHRF
AQSKLVEATEKGEASASALGAVYGPGVALNNRDPVVDFSVCGSRTTTRIT
TLHSTLQLCPYLVARLDQSKWTENKDKHGRWLIKDCSPAVFSKVLDVLRM
KKRAEWIGGEAKARVAVQATDREAIE back to topmRNA from alignment at Scaffold_30:409353..410892- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1540bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGGTGAGCTAGACCGAATGGCGCGGTTTTGGACTGGTGGTGCCCTGGCAA
CCCGGAAAGGCTAGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATA
CCAAGCATTTCCACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACG
CTGTACCGGTTAAATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGT
GCTTGGGTGCTTCTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTA
CGGAGCGCAAATCCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGC
TCGCGCTCTTTCGGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAG
GAGAGGATGTGGTGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCC
ATGATGACTTGGGGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACT
TCCAGCACAAACGCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTA
CGTGCCCGAGGGATGCTCATTCCTCGAATACGATGGGATCGATATGGCGG
AAACTAAGGGTTATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGAC
GTTCATCGGTTCGGTGGCTCAATTGCCGCGTCGTTCGAAGAGGAGCATAA
AGCGCTGCAGCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGC
ATCCGCAAGCGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACA
ACAGAGATCCTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACC
AGGATCACCACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGC
TCGACTGGACCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGT
GGTTAATCAAAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTA
CTGCGAATGAAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACG
CGTTGCCGTCCAGGCCACCGATCGCGAGGCGATCGAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_30:409353..410892- >EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATACCAAGCATTTCC
ACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACGCTGTACCGGTTA
AATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGTGCTTGGGTGCTT
CTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTACGGAGCGCAAAT
CCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGCTCGCGCTCTTTC
GGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAGGAGAGGATGTGG
TGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCCATGATGACTTGG
GGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACTTCCAGCACAAAC
GCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTACGTGCCCGAGGG
ATGCTCATTCCTCGAATACGATGGGATCGATATGGCGGAAACTAAGGGTT
ATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGACGTTCATCGGTTC
GCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGCATCCGCAAG
CGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACAACAGAGATC
CTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACCAGGATCACC
ACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGCTCGACTGGA
CCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGTGGTTAATCA
AAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTACTGCGAATG
AAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACGCGTTGCCGT
CCAGGCCACCGATCGCGAGGCGATCGAGTAG back to top
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