EsuBft1323_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1323_9a-0001
Unique Name	EsuBft1323_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:6564..7601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1323_9
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	103
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_9a	EsuBft1323_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 6564..7601 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_9a-0001-exon	EsuBft1323_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 6564..7601 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_9a-0001-cds	EsuBft1323_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 6564..7433 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_9a-0001-exon	agat-three_prime_utr-2995	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 7434..7601 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_9a-0001	EsuBft1323_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 6564..7433 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:6564..7601+
coding sequence from alignment at Scaffold_106:6564..7601+

spliced messenger RNA

>EsuBft1323_9a-0001 ID=EsuBft1323_9a-0001|Name=EsuBft1323_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_106:6564..7601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGTGCCGCTGATCGCAGCAATGCTAGGGAGAGCGCCGTCGCGGA
GTCCATGAACGCCAAAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACG
GGAGGTACTTGCGCGAACCTGTTCGAGAGTCTGGCCCGTCAAGGCGACAC
AGCGGCGAAGCAGGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGC
TCACAGCCAAGGCTATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTG
GCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGG
TACACTTCTCCTCCGTTCAGCGGGAAATCGAAATATCTCAACGAATGGCT
AATTGATTTCCGCATGGCAGCTAATGGATCAAACCTGTTGGAACAATTTG
AAGAAAGCGAGAGCTTGGAGATTCTCGTCAACAGCGGAAAGAGCAAGTTT
TCGCTGTCACAGCAGCACCGGAGCGAGCAAGTAGAGCTCGCACTCCACGC
GTGGAACTTCCTGTCCCCCGCGTTGAAAGAAAAAGATCGGAAAATCATGA
AGACGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCACAACACCATACAC
GACCCTGAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCATGACGTC
GACCAAGATCTCTAGAGGTGAAAACCTTCAAAACGCCCTAAATGAGATGC
TCCAAACCGCAAAGTCCTTCACCGAGGAAGGACTAACTGTCAACGAAACG
TTCGTTCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCATGAC
AAAGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAA
AGGAAGCAATGATCGAATAACAGGCGATCAAGGACAAGCTGGAGCAGGGG
AAAGGAAAAGGGGCGAAGGGCGAAGAGCAAGTGTACTTCGCCGACGGTGA
GGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTC
GTGGCGGGGGTCGTGGCCGCAGCAGCAGCCGTGGCCGC

protein sequence of EsuBft1323_9a-0001

>EsuBft1323_9 ID=EsuBft1323_9|Name=EsuBft1323_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=289bp
MDGAADRSNARESAVAESMNAKGGAPWTGSAQDGRYLREPVRESGPSRRH
SGEAGGFVPQEVRVAAAHSQGYSSAMGDGGAAVGFGYGATTPATGYQSVR
YTSPPFSGKSKYLNEWLIDFRMAANGSNLLEQFEESESLEILVNSGKSKF
SLSQQHRSEQVELALHAWNFLSPALKEKDRKIMKTAETPQGALREHNTIH
DPESSVQPSEDLKSMTSTKISRGENLQNALNEMLQTAKSFTEEGLTVNET
FVLHLFLDALSDEYAMTKHNLRHAKELTRTGVLKEAMIE

mRNA from alignment at Scaffold_106:6564..7601+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1323_9a-0001 ID=EsuBft1323_9a-0001|Name=EsuBft1323_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_106:6564..7601+ (Ectocarpus subulatus male Bft15b)
ATGGATGGTGCCGCTGATCGCAGCAATGCTAGGGAGAGCGCCGTCGCGGA
GTCCATGAACGCCAAAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACG
GGAGGTACTTGCGCGAACCTGTTCGAGAGTCTGGCCCGTCAAGGCGACAC
AGCGGCGAAGCAGGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGC
TCACAGCCAAGGCTATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTG
GCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGG
TACACTTCTCCTCCGTTCAGCGGGAAATCGAAATATCTCAACGAATGGCT
AATTGATTTCCGCATGGCAGCTAATGGATCAAACCTGTTGGAACAATTTG
AAGAAAGCGAGAGCTTGGAGATTCTCGTCAACAGCGGAAAGAGCAAGTTT
TCGCTGTCACAGCAGCACCGGAGCGAGCAAGTAGAGCTCGCACTCCACGC
GTGGAACTTCCTGTCCCCCGCGTTGAAAGAAAAAGATCGGAAAATCATGA
AGACGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCACAACACCATACAC
GACCCTGAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCATGACGTC
GACCAAGATCTCTAGAGGTGAAAACCTTCAAAACGCCCTAAATGAGATGC
TCCAAACCGCAAAGTCCTTCACCGAGGAAGGACTAACTGTCAACGAAACG
TTCGTTCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCATGAC
AAAGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAA
AGGAAGCAATGATCGAATAACAGGCGATCAAGGACAAGCTGGAGCAGGGG
AAAGGAAAAGGGGCGAAGGGCGAAGAGCAAGTGTACTTCGCCGACGGTGA
GGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTC
GTGGCGGGGGTCGTGGCCGCAGCAGCAGCCGTGGCCGC

Coding sequence (CDS) from alignment at Scaffold_106:6564..7601+

>EsuBft1323_9a-0001 ID=EsuBft1323_9a-0001|Name=EsuBft1323_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=870bp|location=Sequence derived from alignment at Scaffold_106:6564..7601+ (Ectocarpus subulatus male Bft15b)
ATGGATGGTGCCGCTGATCGCAGCAATGCTAGGGAGAGCGCCGTCGCGGA
GTCCATGAACGCCAAAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACG
GGAGGTACTTGCGCGAACCTGTTCGAGAGTCTGGCCCGTCAAGGCGACAC
AGCGGCGAAGCAGGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGC
TCACAGCCAAGGCTATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTG
GCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGG
TACACTTCTCCTCCGTTCAGCGGGAAATCGAAATATCTCAACGAATGGCT
AATTGATTTCCGCATGGCAGCTAATGGATCAAACCTGTTGGAACAATTTG
AAGAAAGCGAGAGCTTGGAGATTCTCGTCAACAGCGGAAAGAGCAAGTTT
TCGCTGTCACAGCAGCACCGGAGCGAGCAAGTAGAGCTCGCACTCCACGC
GTGGAACTTCCTGTCCCCCGCGTTGAAAGAAAAAGATCGGAAAATCATGA
AGACGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCACAACACCATACAC
GACCCTGAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCATGACGTC
GACCAAGATCTCTAGAGGTGAAAACCTTCAAAACGCCCTAAATGAGATGC
TCCAAACCGCAAAGTCCTTCACCGAGGAAGGACTAACTGTCAACGAAACG
TTCGTTCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCATGAC
AAAGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAA
AGGAAGCAATGATCGAATAA