Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo130685 |
| ProteomeId | EsuBft1323_8 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 934 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.21e-11 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0043170 |
| GO | 0003824 |
| GO | 0044238 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=934bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCCGGGGGACGGAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNGCGAC
CATCCTGGAAACTGGCTGGACGGGGATTGTTGAGGACTACATCTGCAACT
CGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCTTTTGGAGGAG
ATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTT
CGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCACTCCCAGACCCAC
AGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAGTAATGTGGAAGTA
GTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTG
GGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCT
TTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAG
TGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGATAGTCGACTTCAA
GGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCGGCATCGACTTCCA
CCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTA
CCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATGTGAAGCAA
GCGTACATCCACGCTAAGCTAATAGAAGAAATATACCTCAGGTTCCCGGA
AGGATGTGGTAGCATGTCCGGCAAAGTGGTCAATGTTGAGCGTGCCCTGT
ATGGCCTAGAGCAGTCGCCGTGAGTGGGGGTTCGAACCTCCCGATGCCCT
CATCGAAAATGGATACGAGCAGTGCAGGGTTGACCCGTGTGTCTTCCGGA
AGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGAC
ATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGG back to topprotein sequence of EsuBft1323_8a-0001 >EsuBft1323_8 ID=EsuBft1323_8|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MYRREMQEVLGPEQQAFGAEVDASWSSQPLPDPQLSVTSPLGQKPSNVEV
VPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSK
WVFSWKTNEKGLIVDFKARMVARGFSQIPASTSTTHPQRARLQRLSRR back to topmRNA from alignment at Scaffold_106:8049..9095+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1047bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)
TTCCGGGGGACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCCGGAAGGGGC
GACTTCGGCGGAGGCAGTGACAGCCCCACCGACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCCCGAGCAGCAGCAGCAGNNNNNNNNNNNNNNNNN
NNNNNNNNGCGACCATCCTGGAAACTGGCTGGACGGGGATTGTTGAGGAC
TACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACG
CCTTTTGGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGG
AACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCA
CTCCCAGACCCACAGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAG
TAATGTGGAAGTAGTACCGATGACGTACAAGGATGTGATGTGTTCCAAGT
ACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGAC
AAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGC
CATAGGTTCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGA
TAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCG
GCATCGACTTCCACCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATC
AAGACGGTGATTACCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTG
GGATGTGAAGCAAGCGTACATCCACGCTAAGCTAATAGAAGAAATATACC
TCAGGTTCCCGGAAGGATGTGGTAGCATGTCCGGCAAAGTGGTCAATGTT
GAGCGTGCCCTGTATGGCCTAGAGCAGTCGCCGTGAGTGGGGGTTCGAAC
CTCCCGATGCCCTCATCGAAAATGGATACGAGCAGTGCAGGGTTGACCCG
TGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGAT
CTACGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGG back to topCoding sequence (CDS) from alignment at Scaffold_106:8049..9095+ >EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)
ATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTT
CGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCACTCCCAGACCCAC
AGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAGTAATGTGGAAGTA
GTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTG
GGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCT
TTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAG
TGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGATAGTCGACTTCAA
GGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCGGCATCGACTTCCA
CCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATCAAGACGGTGA back to top
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