EsuBft1323_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1323_5a-0001
Unique NameEsuBft1323_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:30389..31234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1323_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length35
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_5aEsuBft1323_5aEctocarpus subulatus male Bft15bgeneScaffold_106 30389..31234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_5a-0001-exonEsuBft1323_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 30389..30434 +
EsuBft1323_5a-0001-exonagat-exon-50619Ectocarpus subulatus male Bft15bexonScaffold_106 30929..31234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_5a-0001-cdsEsuBft1323_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 30389..30434 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_5a-0001-exonagat-three_prime_utr-2992Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 31141..31234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_5a-0001EsuBft1323_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 30389..31140 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1323_5a-0001 ID=EsuBft1323_5a-0001|Name=EsuBft1323_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=352bp|location=Sequence derived from alignment at Scaffold_106:30389..31234+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGTCGC
GCCCTCCACACTGTTCCTGGGGATGAACAGAATGTTCGCCAGCATCTGCG
AACTCCAGGATGGAAGCGAGTCCGCGTGGCCGCCATTGACGTTCAGGGGC
TGGATTCCCACGGACAACGACAAGGTCCGTCTGTTCGTCCTAACGTTCCT
GGAGTCGGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACA
AGATGTGAGTACTGGCCCTCAAGAGCGTGCGAACGGAGGGTTTGTTTGAC
AAGCCGCTGTTCTTCGAGGAGCAGCATAGCACGTGGGCAGTGGAAGTCGA
CG
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protein sequence of EsuBft1323_5a-0001

>EsuBft1323_5 ID=EsuBft1323_5|Name=EsuBft1323_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MGSHDIKGAQWAKSKVAPSTLFLGMNRMFASICELQDGSESAWPPLTFRG
WIPTDNDKVRLFVLTFLESGCDYLPAISGLPFDKM
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mRNA from alignment at Scaffold_106:30389..31234+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1323_5a-0001 ID=EsuBft1323_5a-0001|Name=EsuBft1323_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=846bp|location=Sequence derived from alignment at Scaffold_106:30389..31234+ (Ectocarpus subulatus male Bft15b)
ATGGGTTCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGGTAC
GTGTCGCGATGTGATCAACTTTGTAGCGGAGCACGGTTTGTGGGCGACGA
CGTCGCAAATTCAGCACCGAGAAGATTACCACGCAAAGTTCGTAGAGGAC
AAGGACCTTCTGAGCCTTGACGCCGAGTGCGCCGTCATTCCCCTGGACAA
GTGTGATTTTGACCCGAGGGTCGGAGTTGGCCAGGGGGAGGGGCTTCATC
TTCCCTTCATCGCTGCGACGGCTTTGACGGTAGGGCCCGACGTAGGTCGA
ATGGACGACTGGTGGTTGGTAAAGAGCCGGGGATCTCTGAAGGTAGAGGA
CTTCCTTATGGGGCCGGAGCGGGACCGGGGGGACGGAGCGCGGCGGTATA
ACGAGTTCGAGTCTGAACTCCGCAAGGTAAGACACCATTTTTTGTACTTT
GTCCCTCCTTGCTTTCTGGTTTTTCCACGACCTATCGCATCTGACTGGAT
ATATACTACCCAATTATATATTGCGTTCGTCGAGTCTAAGTCGCGCCCTC
CACACTGTTCCTGGGGATGAACAGAATGTTCGCCAGCATCTGCGAACTCC
AGGATGGAAGCGAGTCCGCGTGGCCGCCATTGACGTTCAGGGGCTGGATT
CCCACGGACAACGACAAGGTCCGTCTGTTCGTCCTAACGTTCCTGGAGTC
GGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACAAGATGT
GAGTACTGGCCCTCAAGAGCGTGCGAACGGAGGGTTTGTTTGACAAGCCG
CTGTTCTTCGAGGAGCAGCATAGCACGTGGGCAGTGGAAGTCGACG
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Coding sequence (CDS) from alignment at Scaffold_106:30389..31234+

>EsuBft1323_5a-0001 ID=EsuBft1323_5a-0001|Name=EsuBft1323_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_106:30389..31234+ (Ectocarpus subulatus male Bft15b)
ATGGGTTCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGTCGC
GCCCTCCACACTGTTCCTGGGGATGAACAGAATGTTCGCCAGCATCTGCG
AACTCCAGGATGGAAGCGAGTCCGCGTGGCCGCCATTGACGTTCAGGGGC
TGGATTCCCACGGACAACGACAAGGTCCGTCTGTTCGTCCTAACGTTCCT
GGAGTCGGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACA
AGATGTGA
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