EsuBft1323_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1323_10a-0001
Unique Name	EsuBft1323_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:2671..5520 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G0Q3
ProteomeId	EsuBft1323_10
Protein domains	IPR009057
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	250
Evalue	5.4e-236
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_10a	EsuBft1323_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 2671..5520 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_10a-0001	EsuBft1323_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 2671..4985 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_10a-0001-exon	agat-exon-50629	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 2671..3298 +
EsuBft1323_10a-0001-exon	agat-exon-50627	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 3358..3861 +
EsuBft1323_10a-0001-exon	agat-exon-50626	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 3923..4078 +
EsuBft1323_10a-0001-exon	EsuBft1323_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 4128..4691 +
EsuBft1323_10a-0001-exon	agat-exon-50628	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 4867..5520 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_10a-0001-cds	EsuBft1323_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 2671..3298 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_10a-0001-exon	agat-three_prime_utr-2984	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 4986..5520 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:2671..5520+
coding sequence from alignment at Scaffold_106:2671..5520+

spliced messenger RNA

>EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2506bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTCTGCCATCCTCCAAGACAACGC
CGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGTTCTTGGAGG
ATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCCAAGAACGAT
GAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAGCCTCCTCGC
CAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGTTCGTGGAGC
GGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCACGTTC
CGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGCGGCGTCCTT
CCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGCATAACCTGT
CCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGAGCGGCTT
CCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGCAAGAGCC
GGTGCAGTACAGGCGCCGGATGAGTCCGACGTCTCTGGAGCGTTGGAATG
TGGATCAAGTGTCTTTGGCATTCGTGAACAGGCTGCTCGACACGTGGGAC
AACGGAGGTGCGTTTCGGGTAGCAATCTCGCAGCCCTTACCTGGCCTAGA
GAAAAGGCAGTGCACGATGCAAGTCATCTTTGGTCCGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATCATGGACAACTTGCACGCGCAGACCACGGAC
GAGTTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTATGG
CCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGAC
GATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACACATGGCTCGAGCAG
TCGGACAACCTCGAGAGATGGGAAACCGCGTCGGTGACAGCTTCTGATCG
GCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCATGGCAAGACTCAACA
GCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGCCATG
ACCGGGGACGGCTCGGGCGATGATCGAATCACCTTGGAGGGTTTGGACAA
GCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGTT
CGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGGA
GGACCTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAAGAAGACGACGG
CGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACG
ACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATA
CCGGCAGCCTTTCGTATTTAAGAAGCTAAACCCGTTGCACTTGACAGATT
GCATTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAG
GGCTGATCACTCAACAATCTCAGAGGGACACTCGCCACCTGTACGACTAC
TGTTGCAGCTGGAGCTAGACCAGAGTACGCGCGAGATGAAGTTGCCCTTA
GACAAGTACAGCGGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCT
TGAGAGCGTTAGTAGATCGGGGAGGGTACGCAGGACCAACGTCACCCTTG
TGGACCAAGAAGGTTGACAGTTGCTGCTCCATGCCTTGGTATTTTCTTAT
ATCGACAGCAGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCA
AATGATTTTAAAATACTGTAAGAACAAGAACACCTCCTTCTGGAGAAGAC
TGGACGACGAAATAAGAACTTGGCAAATAAGAACTGGTGCTCGGGTTGGG
GCAGCCAATAAGAACTGAGCCTCGCTCAATATAGGAGGTTTTTAAGTGCG
GGCCGG

protein sequence of EsuBft1323_10a-0001

>EsuBft1323_10 ID=EsuBft1323_10|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=656bp
MNELISGISFPPPIPXRRSCPHCPMTFVNEQGLGIHVKTQYSSANMSNGV
RLRRMLRKDVGGNVLLWEAAGPGRYLHVKXHCPMTFVNEQGLGIHVKTQY
SSANMSNGVRLRRMLRKDVGGNVLLWEAAGPGRYLHVKFDHATETASFVL
QRKRFLDLDLDSDGFMDRNPRSLVGLPSAATASFVLQRKRFLDLDLDSDG
FMDRKPKDTSAILQDNAEDLWKEEQRTPLQFLEDRLKIPYSNIVKWAKND
EELVAATADDVKRSLLAKQQPEAEKRLYKRFVERRKSKLKVSTLWLTITF
RKLVREMYLGDQRAASFRASLKWGRKWAKRHNLSKRRRTNLKNKSVEERL
PKIQRFHRLFRKLLQEPVQYRRRMSPTSLERWNVDQVSLAFVNRLLDTWD
NGGAFRVAISQPLPGLEKRQCTMQVIFGPGXXXXXXXXXIMDNLHAQTTD
EFKEYLAKHCNTLAWYGPSECTDEVQPVDAGAGRFLKVEVGRQMDTWLEQ
SDNLERWETASVTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAM
TGDGSGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDEPEGRAEEGDG
GPETLMEGVDSSEEDDGDISQPQTDELALLDDDDSMDPQDPEDEIQGMEI
PAAFRI

mRNA from alignment at Scaffold_106:2671..5520+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2850bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTGTGGGGCTCCCAAGCGCAGGCG
ATACGACTTCAGGTTCAAAGCCCACGCGATCAACCAGCTGCCATCCTCCA
AGACAACGCCGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGT
TCTTGGAGGATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCC
AAGAACGATGAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAG
CCTCCTCGCCAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGT
TCGTGGAGCGGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACG
ATCACGTTCCGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGC
GGCGTCCTTCCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGC
ATAACCTGTCCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAA
GAGCGGCTTCCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCT
GCAAGAGCCGGTGCAGTACAGGCGCCGGATGAGTCCGACGTGTCAGCAGT
CACGACGGTCGCGGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCC
AGCTCTGGAGCGTTGGAATGTGGATCAAGTGTCTTTGGCATTCGTGAACA
GGCTGCTCGACACGTGGGACAACGGAGGTGCGTTTCGGGTAGCAATCTCG
CAGCCCTTACCTGGCCTAGAGAAAAGGCAGTGCACGATGCAAGTCATCTT
TGGTCCGGGTGAGAAGACCATGCGCATTTCGGTGATTTTCCGAGGCACGG
GAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCATGGACAACTT
GCACGCGCAGACCACGGACGAGTTCAAGGAGTATCTTGCGAAGCACTGCA
ACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCA
GTTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTCGGGAGGCAGAT
GGACACATGGCTCGAGCAGTCGGACAACCTCGAGAGATGGGAAACCGCGT
CGGTGACAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCG
GCCATGGCAAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGA
AAAGTGCGGGATGGCCATGACCGGGGACGGCTCGGGCGATGATCGAATCA
CCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGT
AGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCG
GGCGGAGGAGGGCGATGGAGGACCTGAGACGCTCATGGAGGGCGTTGACT
CCAGCGAAGAAGACGACGGCGGTAAGTTTTTTTTGCACAAAACCAACTCT
TCATTTTCTTTTTGTTGATGTCGATGTCCTTCATGTTGACGTTAGCTTGT
TTCCACGCACGCCTGCACTCAAACTATGATAAGTTCAGGTTGAGTTTCGC
GACGTGACACCCTAACTTCTTGTGTTTCCCGTTGCCTTGTTCGCAGACAT
CTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACGACAGCA
TGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATACCGGCA
GCCTTTCGTATTTAAGAAGCTAAACCCGTTGCACTTGACAGATTGCATTT
GCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAGGGCTGA
TCACTCAACAATCTCAGAGGGACACTCGCCACCTGTACGACTACTGTTGC
AGCTGGAGCTAGACCAGAGTACGCGCGAGATGAAGTTGCCCTTAGACAAG
TACAGCGGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCTTGAGAG
CGTTAGTAGATCGGGGAGGGTACGCAGGACCAACGTCACCCTTGTGGACC
AAGAAGGTTGACAGTTGCTGCTCCATGCCTTGGTATTTTCTTATATCGAC
AGCAGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCAAATGAT
TTTAAAATACTGTAAGAACAAGAACACCTCCTTCTGGAGAAGACTGGACG
ACGAAATAAGAACTTGGCAAATAAGAACTGGTGCTCGGGTTGGGGCAGCC
AATAAGAACTGAGCCTCGCTCAATATAGGAGGTTTTTAAGTGCGGGCCGG

Coding sequence (CDS) from alignment at Scaffold_106:2671..5520+

>EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1971bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTCTGCCATCCTCCAAGACAACGC
CGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGTTCTTGGAGG
ATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCCAAGAACGAT
GAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAGCCTCCTCGC
CAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGTTCGTGGAGC
GGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCACGTTC
CGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGCGGCGTCCTT
CCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGCATAACCTGT
CCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGAGCGGCTT
CCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGCAAGAGCC
GGTGCAGTACAGGCGCCGGATGAGTCCGACGTCTCTGGAGCGTTGGAATG
TGGATCAAGTGTCTTTGGCATTCGTGAACAGGCTGCTCGACACGTGGGAC
AACGGAGGTGCGTTTCGGGTAGCAATCTCGCAGCCCTTACCTGGCCTAGA
GAAAAGGCAGTGCACGATGCAAGTCATCTTTGGTCCGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATCATGGACAACTTGCACGCGCAGACCACGGAC
GAGTTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTATGG
CCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGAC
GATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACACATGGCTCGAGCAG
TCGGACAACCTCGAGAGATGGGAAACCGCGTCGGTGACAGCTTCTGATCG
GCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCATGGCAAGACTCAACA
GCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGCCATG
ACCGGGGACGGCTCGGGCGATGATCGAATCACCTTGGAGGGTTTGGACAA
GCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGTT
CGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGGA
GGACCTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAAGAAGACGACGG
CGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACG
ACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATA
CCGGCAGCCTTTCGTATTTAA