Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G0Q3 |
| ProteomeId | EsuBft1323_10 |
| Protein domains | IPR009057 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 250 |
| Evalue | 5.4e-236 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003677 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2506bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTCTGCCATCCTCCAAGACAACGC
CGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGTTCTTGGAGG
ATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCCAAGAACGAT
GAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAGCCTCCTCGC
CAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGTTCGTGGAGC
GGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCACGTTC
CGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGCGGCGTCCTT
CCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGCATAACCTGT
CCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGAGCGGCTT
CCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGCAAGAGCC
GGTGCAGTACAGGCGCCGGATGAGTCCGACGTCTCTGGAGCGTTGGAATG
TGGATCAAGTGTCTTTGGCATTCGTGAACAGGCTGCTCGACACGTGGGAC
AACGGAGGTGCGTTTCGGGTAGCAATCTCGCAGCCCTTACCTGGCCTAGA
GAAAAGGCAGTGCACGATGCAAGTCATCTTTGGTCCGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATCATGGACAACTTGCACGCGCAGACCACGGAC
GAGTTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTATGG
CCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGAC
GATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACACATGGCTCGAGCAG
TCGGACAACCTCGAGAGATGGGAAACCGCGTCGGTGACAGCTTCTGATCG
GCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCATGGCAAGACTCAACA
GCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGCCATG
ACCGGGGACGGCTCGGGCGATGATCGAATCACCTTGGAGGGTTTGGACAA
GCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGTT
CGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGGA
GGACCTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAAGAAGACGACGG
CGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACG
ACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATA
CCGGCAGCCTTTCGTATTTAAGAAGCTAAACCCGTTGCACTTGACAGATT
GCATTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAG
GGCTGATCACTCAACAATCTCAGAGGGACACTCGCCACCTGTACGACTAC
TGTTGCAGCTGGAGCTAGACCAGAGTACGCGCGAGATGAAGTTGCCCTTA
GACAAGTACAGCGGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCT
TGAGAGCGTTAGTAGATCGGGGAGGGTACGCAGGACCAACGTCACCCTTG
TGGACCAAGAAGGTTGACAGTTGCTGCTCCATGCCTTGGTATTTTCTTAT
ATCGACAGCAGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCA
AATGATTTTAAAATACTGTAAGAACAAGAACACCTCCTTCTGGAGAAGAC
TGGACGACGAAATAAGAACTTGGCAAATAAGAACTGGTGCTCGGGTTGGG
GCAGCCAATAAGAACTGAGCCTCGCTCAATATAGGAGGTTTTTAAGTGCG
GGCCGG back to topprotein sequence of EsuBft1323_10a-0001 >EsuBft1323_10 ID=EsuBft1323_10|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=656bp
MNELISGISFPPPIPXRRSCPHCPMTFVNEQGLGIHVKTQYSSANMSNGV
RLRRMLRKDVGGNVLLWEAAGPGRYLHVKXHCPMTFVNEQGLGIHVKTQY
SSANMSNGVRLRRMLRKDVGGNVLLWEAAGPGRYLHVKFDHATETASFVL
QRKRFLDLDLDSDGFMDRNPRSLVGLPSAATASFVLQRKRFLDLDLDSDG
FMDRKPKDTSAILQDNAEDLWKEEQRTPLQFLEDRLKIPYSNIVKWAKND
EELVAATADDVKRSLLAKQQPEAEKRLYKRFVERRKSKLKVSTLWLTITF
RKLVREMYLGDQRAASFRASLKWGRKWAKRHNLSKRRRTNLKNKSVEERL
PKIQRFHRLFRKLLQEPVQYRRRMSPTSLERWNVDQVSLAFVNRLLDTWD
NGGAFRVAISQPLPGLEKRQCTMQVIFGPGXXXXXXXXXIMDNLHAQTTD
EFKEYLAKHCNTLAWYGPSECTDEVQPVDAGAGRFLKVEVGRQMDTWLEQ
SDNLERWETASVTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAM
TGDGSGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDEPEGRAEEGDG
GPETLMEGVDSSEEDDGDISQPQTDELALLDDDDSMDPQDPEDEIQGMEI
PAAFRI back to topmRNA from alignment at Scaffold_106:2671..5520+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2850bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTGTGGGGCTCCCAAGCGCAGGCG
ATACGACTTCAGGTTCAAAGCCCACGCGATCAACCAGCTGCCATCCTCCA
AGACAACGCCGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGT
TCTTGGAGGATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCC
AAGAACGATGAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAG
CCTCCTCGCCAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGT
TCGTGGAGCGGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACG
ATCACGTTCCGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGC
GGCGTCCTTCCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGC
ATAACCTGTCCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAA
GAGCGGCTTCCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCT
GCAAGAGCCGGTGCAGTACAGGCGCCGGATGAGTCCGACGTGTCAGCAGT
CACGACGGTCGCGGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCC
AGCTCTGGAGCGTTGGAATGTGGATCAAGTGTCTTTGGCATTCGTGAACA
GGCTGCTCGACACGTGGGACAACGGAGGTGCGTTTCGGGTAGCAATCTCG
CAGCCCTTACCTGGCCTAGAGAAAAGGCAGTGCACGATGCAAGTCATCTT
TGGTCCGGGTGAGAAGACCATGCGCATTTCGGTGATTTTCCGAGGCACGG
GAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCATGGACAACTT
GCACGCGCAGACCACGGACGAGTTCAAGGAGTATCTTGCGAAGCACTGCA
ACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCA
GTTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTCGGGAGGCAGAT
GGACACATGGCTCGAGCAGTCGGACAACCTCGAGAGATGGGAAACCGCGT
CGGTGACAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCG
GCCATGGCAAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGA
AAAGTGCGGGATGGCCATGACCGGGGACGGCTCGGGCGATGATCGAATCA
CCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGT
AGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCG
GGCGGAGGAGGGCGATGGAGGACCTGAGACGCTCATGGAGGGCGTTGACT
CCAGCGAAGAAGACGACGGCGGTAAGTTTTTTTTGCACAAAACCAACTCT
TCATTTTCTTTTTGTTGATGTCGATGTCCTTCATGTTGACGTTAGCTTGT
TTCCACGCACGCCTGCACTCAAACTATGATAAGTTCAGGTTGAGTTTCGC
GACGTGACACCCTAACTTCTTGTGTTTCCCGTTGCCTTGTTCGCAGACAT
CTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACGACAGCA
TGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATACCGGCA
GCCTTTCGTATTTAAGAAGCTAAACCCGTTGCACTTGACAGATTGCATTT
GCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAGGGCTGA
TCACTCAACAATCTCAGAGGGACACTCGCCACCTGTACGACTACTGTTGC
AGCTGGAGCTAGACCAGAGTACGCGCGAGATGAAGTTGCCCTTAGACAAG
TACAGCGGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCTTGAGAG
CGTTAGTAGATCGGGGAGGGTACGCAGGACCAACGTCACCCTTGTGGACC
AAGAAGGTTGACAGTTGCTGCTCCATGCCTTGGTATTTTCTTATATCGAC
AGCAGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCAAATGAT
TTTAAAATACTGTAAGAACAAGAACACCTCCTTCTGGAGAAGACTGGACG
ACGAAATAAGAACTTGGCAAATAAGAACTGGTGCTCGGGTTGGGGCAGCC
AATAAGAACTGAGCCTCGCTCAATATAGGAGGTTTTTAAGTGCGGGCCGG
back to topCoding sequence (CDS) from alignment at Scaffold_106:2671..5520+ >EsuBft1323_10a-0001 ID=EsuBft1323_10a-0001|Name=EsuBft1323_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1971bp|location=Sequence derived from alignment at Scaffold_106:2671..5520+ (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATATCCGGTATAAGCTTCCCACCTCCGATCCCGNCCCG
CCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAGCAAGGCCTTG
GAATCCACGTGAAAACGCAATACAGCAGTGCAAACATGTCCAACGGCGTG
CGGCTGCGGCGCATGCTACGGAAGGATGTCGGAGGGAATGTCCTGCTGTG
GGAAGCAGCCGGGCCTGGGCGTTATTTGCACGTAAAGTNTCACTGTCCCA
TGACCTTCGTGAACGAGCAAGGCCTTGGAATCCACGTGAAAACGCAATAC
AGCAGTGCAAACATGTCCAACGGCGTGCGGCTGCGGCGCATGCTACGGAA
GGATGTCGGAGGGAATGTCCTGCTGTGGGAAGCAGCCGGGCCTGGGCGTT
ATTTGCACGTAAAGTTCGATCATGCGACGGAGACGGCTTCGTTTGTCCTC
CAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGA
CCGCAACCCAAGATCACTCGTGGGGCTCCCAAGCGCAGCNACGGCTTCGT
TTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGC
TTTATGGACCGCAAACCCAAGGACACTTCTGCCATCCTCCAAGACAACGC
CGAAGACCTCTGGAAGGAGGAGCAGCGCACGCCTCTTCAGTTCTTGGAGG
ATCGTCTCAAGATTCCCTACAGCAATATAGTGAAGTGGGCCAAGAACGAT
GAGGAATTGGTCGCGGCGACAGCCGATGACGTAAAGAGGAGCCTCCTCGC
CAAACAGCAGCCTGAGGCAGAGAAGCGACTGTACAAGAGGTTCGTGGAGC
GGCGGAAGAGCAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCACGTTC
CGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGCGGCGTCCTT
CCGCGCATCCCTCAAGTGGGGGCGAAAATGGGCCAAGAGGCATAACCTGT
CCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGAGCGGCTT
CCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGCAAGAGCC
GGTGCAGTACAGGCGCCGGATGAGTCCGACGTCTCTGGAGCGTTGGAATG
TGGATCAAGTGTCTTTGGCATTCGTGAACAGGCTGCTCGACACGTGGGAC
AACGGAGGTGCGTTTCGGGTAGCAATCTCGCAGCCCTTACCTGGCCTAGA
GAAAAGGCAGTGCACGATGCAAGTCATCTTTGGTCCGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATCATGGACAACTTGCACGCGCAGACCACGGAC
GAGTTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTATGG
CCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGAC
GATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACACATGGCTCGAGCAG
TCGGACAACCTCGAGAGATGGGAAACCGCGTCGGTGACAGCTTCTGATCG
GCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCATGGCAAGACTCAACA
GCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGCCATG
ACCGGGGACGGCTCGGGCGATGATCGAATCACCTTGGAGGGTTTGGACAA
GCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGTT
CGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGGA
GGACCTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAAGAAGACGACGG
CGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACG
ACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATA
CCGGCAGCCTTTCGTATTTAA back to top
|