Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005100548.1 |
| ProteomeId | EsuBft1311_8 |
| Protein domains | PTHR25952 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 61 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.01e-10 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=618bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGTACAATCTCCGCGGACGGGAAGGCCGGCCGGGATTTCACGAGTCGCAG
CTGCCGAGCGTGGAAGTACGACCGCCGGAACAGTGCTTCGATGTACGACA
GGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTG
GTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCA
CTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCG
GCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGACC
CTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCATGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAACCGCCTCC
CCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGC
GGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAATATGAGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATG
AGGAAATGGCACAGGCAG back to topprotein sequence of EsuBft1311_8a-0001 >EsuBft1311_8 ID=EsuBft1311_8|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLT
RCIGWSKRKRSDRPLSYAQTLIQTGCEETIEATMRKRRLCFAGFVMRMED
NRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMRDEKEGG back to topmRNA from alignment at Scaffold_589:157671..158288- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=618bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)
CGTACAATCTCCGCGGACGGGAAGGCCGGCCGGGATTTCACGAGTCGCAG
CTGCCGAGCGTGGAAGTACGACCGCCGGAACAGTGCTTCGATGTACGACA
GGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTG
GTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCA
CTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCG
GCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGACC
CTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCATGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAACCGCCTCC
CCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGC
GGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAATATGAGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATG
AGGAAATGGCACAGGCAG back to topCoding sequence (CDS) from alignment at Scaffold_589:157671..158288- >EsuBft1311_8a-0001 ID=EsuBft1311_8a-0001|Name=EsuBft1311_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_589:157671..158288- (Ectocarpus subulatus male Bft15b)
ATGTACGACAGGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCA
GGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAA
CAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTCACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGACCCTTATCCAGACAGGCTGCGAGGAAACCATCGAGGCCACCA
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGAC
AACCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC
TCGTGGCCTTCAATATGAGAGACGAAAAGGAAGGGGGTTAA back to top
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