EsuBft1180_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1180_7a-0001
Unique NameEsuBft1180_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:201054..203134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGX1
ProteomeIdEsuBft1180_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length99
Hectar predicted targeting categoryother localisation
Evalue1.32e-40
EggNOG OGsKOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameC2orf69
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
Descriptionmodulation by host of viral RNA genome replication
COG categoryKLT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7aEsuBft1180_7aEctocarpus subulatus male Bft15bgeneScaffold_106 201054..203134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7a-0001EsuBft1180_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 201096..202752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7a-0001-exonagat-exon-58717Ectocarpus subulatus male Bft15bexonScaffold_106 201054..201125 +
EsuBft1180_7a-0001-exonEsuBft1180_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 201367..201489 +
EsuBft1180_7a-0001-exonagat-exon-58719Ectocarpus subulatus male Bft15bexonScaffold_106 201929..202046 +
EsuBft1180_7a-0001-exonagat-exon-58718Ectocarpus subulatus male Bft15bexonScaffold_106 202454..203134 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7a-0001-exonagat-five_prime_utr-1151Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 201054..201095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7a-0001-cdsEsuBft1180_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 201096..201125 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_7a-0001-exonagat-three_prime_utr-1751Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 202753..203134 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=994bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGCCCGATACTTTTGCGACCAGCTTTGCGATCGGTATCGTATGTACGA
AGAAGGTCAATTGGATGCCAAGGGGAAGAGGCTACTCTTGGAGGCCTTGG
CTTCAGGGGACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTTCGGCACGA
ACGGTGTTCCGCGAGAGGGAACTTCAGGAGAATGCCGAGCTGCAGGCGGC
GATATCGTTGGGCAAGTACATGCAGGAGCTGAAGGTGTGGGCTCAGGAGG
AGATGGACGCTTCCGTTTCGCAAAAGGCTCGTTACCTCAAGGGCGGCTCG
GAGTCTTCCAAAGGCGGCAGATCTTCTACGTCGTCCCGTGTAGGACTGCT
GCAGATGCAAGATCAAGACCAGACAGATTTCTCCGCATCCGTCGACGAGA
ATTTGGAGTGGCACCCCAGCACAAACAACGGCAGCACGACACAAGATGAC
ACGGCCGACGAGTACAACAGACAATACATGCGGGGAGGAGAGTACGGGGA
ACAGTACGTCGTGCAAGCTTACAATCAGGCGGCAGTGAACGACGAATACA
CCGGTCAAGACGGCTATGCCCAACAAGAACAACCTCGGGAGGATCACGGC
CATTATAAATAATAGTCTCAATGGCGAGCGGTCTGCTCTTCTTTCACGTT
GATCATCATCATGAATCAGAGAGCTTTACCTCGCGGCCATGATAGGGTGA
ACAATTTTGCCGTCATCGCTGTATCTATCGCCGTAACAGCGCCAGGAATG
CGCGCGTTTCTGTGTTGCGTTGGTTGGTCCTCATGAGGTGCACAGAACGA
GGCTTAGGCTCAACGGCGGTCGCCGACGGCTAGGTTTGTTTTCCCTTTAA
ATATCCTGTAGACAGATACGCCATGTAGCCCAGACACTGTTTCAACAAGT
TAACGGATACGATTGTTCTATTCTACGACGTGATACGTTTTGTTTATTTA
TTTCTCGTTGGCTGCTCCCTCCCCCGTCGCAAAGAATGGAATTG
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protein sequence of EsuBft1180_7a-0001

>EsuBft1180_7 ID=EsuBft1180_7|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MYEEGQLDAKGKRLLLEALASGDSALKMSSAVASARTVFRERELQENAEL
QAAISLGKYMQELKVWAQEEMDASVSQKARYLKGGSESSKGGRSSTSSRV
GLLQMQDQDQTDFSASVDENLEWHPSTNNGSTTQDDTADEYNRQYMRGGE
YGEQYVVQAYNQAAVNDEYTGQDGYAQQEQPREDHGHYK
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mRNA from alignment at Scaffold_106:201054..203134+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2081bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)
TTTGCCCGATACTTTTGCGACCAGCTTTGCGATCGGTATCGTATGTACGA
AGAAGGTCAATTGGATGCCAAGGTACGATGAGGATGCGATGCGATAAGAT
ACAGCGGTAGCTCGTGTTCCTGTTCGCGAAGCAATGCACCACTGGCCAAC
GTAGACAGGAAGCGCTAGTTCTTAAGATTTTTGGGGTTGTGGATGTCAAA
AAAAAGAGGATGCGAGCAACGGCAATGAGCTGCCCATCAATAATTCGGAG
TGTTCATTCATCGCAACGCTTGGTTGGCTGGATTTGTTCGCGTCATTGTG
CGCGACGTTGCAGGGGAAGAGGCTACTCTTGGAGGCCTTGGCTTCAGGGG
ACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTTCGGCACGAACGGTGTTC
CGCGAGAGGGAACTTCAGGAGAATGCCGAGCTGCAGGTGATAGGGAACAA
CCTTGCAACTTCGCGCCAATCGCCGAAAACGCTGAGCTCGTGCGGATCGA
GGTGGTCTCAATAAATCACTTTCCGCATCGGGGTCTCTCAATTTCGTCGT
GCGTGATGGTGCAACGATAAGTTCGGCGTGTTGGGCTGCACCAACAGTGG
CAGTTTCAAGAGCTTTTTTGGTGATAATGAAGCATCGCATGCGTGGTTTC
GACCGTTCCACCGAGAACCTGAAAACTAGTTCGCGGAGGTTGGGTGCCAC
AAGACGATGCGTGCTGTAGATAGACTGCAGATCGAGCGTCGTCAGGCCCC
ATCGCTTGTCAACATTGATGATATCGTTTCATCACGACTTTGGTAACCAC
ACGGACCTGTCTGACATCTTGTTCGACGTCCGCGCGCGGGTGCCCTGCCG
TTCGCGAAACGGTGACACGGTCTAGGCGGCGATATCGTTGGGCAAGTACA
TGCAGGAGCTGAAGGTGTGGGCTCAGGAGGAGATGGACGCTTCCGTTTCG
CAAAAGGCTCGTTACCTCAAGGGCGGCTCGGAGTCTTCCAAAGGTGAGAA
GAAACCGTTGCTGAAGCGCACGCGCCAACCCAATTGGCCACGTGGCTAAC
ACAGCGCTCGCGTTTAAGTCCTGAATGTATGACGATTCGACAAGAGTACT
GTACCTTTGCTGCCGCAAGACGAGCAAAATCACAGTTGAGGCAGAATGGT
GTTGTTTAGTGCATGTTTTGTAGACTCTGGTCGTTTGTTTGCTCTCAAGC
AGCATGGTCTTCGCCTGTGTTTCATCAAACGACCCCGGCAAGTGCTTGGC
ATCTCCGGTAGACTCCCTCTCAAGCCTGATGTCTAGACTACATGAGATTG
CCAAAATGGCCAGAAACAATATGGCGGAGTATATTGGCATCTCTCGCGCG
TCCTACCTCCAACAACGAAGCCCTTATCCGCTGGCCCGATCCGGAGGCAG
GCGGCAGATCTTCTACGTCGTCCCGTGTAGGACTGCTGCAGATGCAAGAT
CAAGACCAGACAGATTTCTCCGCATCCGTCGACGAGAATTTGGAGTGGCA
CCCCAGCACAAACAACGGCAGCACGACACAAGATGACACGGCCGACGAGT
ACAACAGACAATACATGCGGGGAGGAGAGTACGGGGAACAGTACGTCGTG
CAAGCTTACAATCAGGCGGCAGTGAACGACGAATACACCGGTCAAGACGG
CTATGCCCAACAAGAACAACCTCGGGAGGATCACGGCCATTATAAATAAT
AGTCTCAATGGCGAGCGGTCTGCTCTTCTTTCACGTTGATCATCATCATG
AATCAGAGAGCTTTACCTCGCGGCCATGATAGGGTGAACAATTTTGCCGT
CATCGCTGTATCTATCGCCGTAACAGCGCCAGGAATGCGCGCGTTTCTGT
GTTGCGTTGGTTGGTCCTCATGAGGTGCACAGAACGAGGCTTAGGCTCAA
CGGCGGTCGCCGACGGCTAGGTTTGTTTTCCCTTTAAATATCCTGTAGAC
AGATACGCCATGTAGCCCAGACACTGTTTCAACAAGTTAACGGATACGAT
TGTTCTATTCTACGACGTGATACGTTTTGTTTATTTATTTCTCGTTGGCT
GCTCCCTCCCCCGTCGCAAAGAATGGAATTG
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Coding sequence (CDS) from alignment at Scaffold_106:201054..203134+

>EsuBft1180_7a-0001 ID=EsuBft1180_7a-0001|Name=EsuBft1180_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_106:201054..203134+ (Ectocarpus subulatus male Bft15b)
ATGTACGAAGAAGGTCAATTGGATGCCAAGGGGAAGAGGCTACTCTTGGA
GGCCTTGGCTTCAGGGGACAGTGCCCTTAAGATGTCGTCAGCCGTCGCTT
CGGCACGAACGGTGTTCCGCGAGAGGGAACTTCAGGAGAATGCCGAGCTG
CAGGCGGCGATATCGTTGGGCAAGTACATGCAGGAGCTGAAGGTGTGGGC
TCAGGAGGAGATGGACGCTTCCGTTTCGCAAAAGGCTCGTTACCTCAAGG
GCGGCTCGGAGTCTTCCAAAGGCGGCAGATCTTCTACGTCGTCCCGTGTA
GGACTGCTGCAGATGCAAGATCAAGACCAGACAGATTTCTCCGCATCCGT
CGACGAGAATTTGGAGTGGCACCCCAGCACAAACAACGGCAGCACGACAC
AAGATGACACGGCCGACGAGTACAACAGACAATACATGCGGGGAGGAGAG
TACGGGGAACAGTACGTCGTGCAAGCTTACAATCAGGCGGCAGTGAACGA
CGAATACACCGGTCAAGACGGCTATGCCCAACAAGAACAACCTCGGGAGG
ATCACGGCCATTATAAATAA
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