EsuBft1180_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1180_6a-0001
Unique NameEsuBft1180_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:196585..199439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGX1
ProteomeIdEsuBft1180_6
Protein domainsIPR000048
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length77
Hectar predicted targeting categoryother localisation
Evalue5.3e-119
EggNOG OGsKOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameC2orf69
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
Descriptionmodulation by host of viral RNA genome replication
COG categoryKLT
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_6aEsuBft1180_6aEctocarpus subulatus male Bft15bgeneScaffold_106 196585..199439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_6a-0001EsuBft1180_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 196896..199439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_6a-0001-exonagat-exon-58715Ectocarpus subulatus male Bft15bexonScaffold_106 196585..196622 +
EsuBft1180_6a-0001-exonagat-exon-58716Ectocarpus subulatus male Bft15bexonScaffold_106 196866..196953 +
EsuBft1180_6a-0001-exonagat-exon-58713Ectocarpus subulatus male Bft15bexonScaffold_106 197272..197378 +
EsuBft1180_6a-0001-exonagat-exon-58710Ectocarpus subulatus male Bft15bexonScaffold_106 197537..197685 +
EsuBft1180_6a-0001-exonagat-exon-58711Ectocarpus subulatus male Bft15bexonScaffold_106 198087..198141 +
EsuBft1180_6a-0001-exonagat-exon-58712Ectocarpus subulatus male Bft15bexonScaffold_106 198551..198711 +
EsuBft1180_6a-0001-exonagat-exon-58714Ectocarpus subulatus male Bft15bexonScaffold_106 199122..199134 +
EsuBft1180_6a-0001-exonEsuBft1180_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 199281..199439 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_6a-0001-exonagat-five_prime_utr-1149Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 196585..196622 +
EsuBft1180_6a-0001-exonagat-five_prime_utr-1150Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 196866..196895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1180_6a-0001-cdsEsuBft1180_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 196896..196953 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=770bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAAGAGATCGAGCGAAGAGCCGCTGTTCAACTCCAGTCGTTCTGGAGG
GGTTGCATTGGCAAGCATATGGGTGCCCAGGTTAAGAGCCAGATGGCGAG
AGTCAAGCGAGCAAGGCACCGCACCGCAATCAAGCTTCAGGCGGCGTTCA
GGGGGCACCGTGGGCGAGGAGAGTGGAGAAGAGTGCACCAAGAGTGGAAG
AAGAATAGCAGGGCGGCTCGAAAGATCCAGAAGGTGTTTAGAGGCAGTCG
CGTGATGAGTTGGCGAGATGTTCGTCTGAACAAGGTGGCGCAGCACGTGT
TTATGAGGCAAGAGATGGAGTTCCAGGAGAGGTTGGACGGCGGTCGTGCT
CGCTACCAGCATCTCGTTGACGAGGCCGGCAGGGACTCATGCAGCGAGGA
TGACGACGAAGCAGATGCCACCGACCACTGGGAGGAGATCTGGGACGAGG
GCGCGGACCATAGTTATTGGTGGAACGCTGCGTTACGGGAGTCGTCGCCC
GTGAAGCCCTTGGCCTTCGAGGAAGGTCTCGTGGGAATGCGAGTATGGCT
GACTCGTCCGACGTCCGCAGGCCTGGCGGGGGAGGGTCAACTCACACGGT
TGTCCTTCGAGGACGTCATGATGGTGCGGAGCAACGGGGCATGGGTGCAG
CTGAGAAATTTCATCGAGCCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGA
GATGCTAAGCAGGAGGCGAAGAGCCAACCAGCACCTATTCGACAGGGAGC
AAAGGCACGAGCGAACCTGA
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protein sequence of EsuBft1180_6a-0001

>EsuBft1180_6 ID=EsuBft1180_6|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MGAQVKSQMARVKRARHRTAIKLQAAFRGHRGRGEWRRVHQEWKKNSRAA
RKIQKVFRGSRVMSWRDVRLNKVAQHVFMRQEMEFQERLDGGRARYQHLV
DEAGRDSCSEDDDEADATDHWEEIWDEGADHSYWWNAALRESSPVKPLAF
EEGLVGMRVWLTRPTSAGLAGEGQLTRLSFEDVMMVRSNGAWVQLRNFIE
PAVAKARARKEMLSRRRRANQHLFDREQRHERT
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mRNA from alignment at Scaffold_106:196585..199439+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2855bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)
AAAAAGAGATCGAGCGAAGAGCCGCTGTTCAACTCCAGGTAAGAGTTTGT
GCCACAGGAGATGACTCGTCGGTGGCCCGTCTCCAACGACACAGTGCACG
AGGCATTGCTCACGAAAGGACATTCTTCTGCTCAAGAGGTCCAGCATGTT
TTGCCATGCGTTAGGTTGTTTGTCTACCTACTCGGTAGCTCCCCCAATCC
CCCCACCCCTCCATTTCGTGGATGCCGTGTAGTTTTCCTACTCGTTCTTC
GTCCTCTACGGCGGTTTAATGTGTCCGGCAGTCGTTCTGGAGGGGTTGCA
TTGGCAAGCATATGGGTGCCCAGGTTAAGAGCCAGATGGCGAGAGTCAAG
CGAGCAAGGCACCGCACCGGTGGGTTCAGACACTTTTGCTATTCGTTCTT
GTGGCCCTGCGTGTGCGGGCAGGACCGAAGTATAATGAGCAATGCCGGTG
GCATCCGAAGCACCGTAGAAGGAGCGCTTTAGGCATTCTTGATGCGGCTA
GATACGGGTACCCGATGAAATTCGGTGGAATCGTTCGTCAGCACACATAA
CCTGTGTCCAACAGTGTCGGGTATGTATGTATGTCGCCCCCCGTTGGTGG
GAAGTTGCTCGTGACACTCGTTCTCCGTTCGCGTCGGGAACAAATAATGA
ACGCTCGATAAAATCAAAACTCAAACACCAAACACAGCAATCAAGCTTCA
GGCGGCGTTCAGGGGGCACCGTGGGCGAGGAGAGTGGAGAAGAGTGCACC
AAGAGTGGAAGAAGAATAGCAGGGCGGCTCGAAAGATCCAGAAGGTGATC
GAAAAGCAGGAGCCCCGGCAAAACGGCAGCGTTTTACGTACACTTCCACG
CCACGCGTGATTGTTCTTTACTTCACCTATTCACGCATCCTTTGCGCTGA
GCCTCCCTCCCACCTCCCACCTCTCCGTATCACTCGCGTGTCTTATGCGC
AGGTGTTTAGAGGCAGTCGCGTGATGAGTTGGCGAGATGTTCGTCTGAAC
AAGGTGGCGCAGCACGTGTTTATGAGGCAAGAGATGGAGTTCCAGGAGAG
GTTGGACGGCGGTCGTGCTCGCTACCAGCATCTCGTTGACGAGGCCGGCA
GGTATTGCGTGTTTTCTGTTTCACAAGTGTAGAGATGTGGTTGGTGTAAT
GGTATACTCTGTGTGGAAGACGAGGGTGGGTTCTGTGTGGGTGTGTACGT
TGAGATTTGATGTGTACAGATGAACCATGGCAGCAGCACCACAGCCTAAG
GCAACTTGTGAGGATATGAGGCACATTTTCTCTTGGATGTCTCACCCCAG
AGCGCGTGTTATATCTGCTGCGGAGATAGCTGACTGCCGCAGTTCCCAAT
GTGCAGTTCTATAAAGATCGAGAGTGACAAGACTTGCCGAGCCTCGGATG
TCGGTCAACGATGAACACTTCGGTTGAGCACTTGGAAGTCCCCATGTTTT
ATTGGTGAACCTGCCCGTCCTTATACACCTCGGATGGACTCCATGGTTGC
AGGGACTCATGCAGCGAGGATGACGACGAAGCAGATGCCACCGACCACTG
GGAGGAGGTAGGGAAACCCTGGCATGCACAGGATTTACATTGTGGCAACG
ATTTGAATATTGCCTCAACGCCGTCGATGGGAGAGAGAAAGCTGCGCTCT
ACGAAAACATGGTCACACGTGGACGTCTAACCTCGCGTCACTAGTTCGTC
TCCCCCCCCACACTATCAGGGGCCCCCGTGCCGAACCTATCCCTATTGAC
ACTCTCACCTGTTATTCGTTCGTCACCGTGCAAACACCCTCGATTTGATA
ACGATGCTGGTCATTTGTGTGCGTCCTTGGTTTCCTTCAAGCTACACTGC
TGCGTGAGACACATTTGTCTGGGGTTTGTTCCTGTGCTTTCTTTTCTCCC
TTCCTGCCGTACTGTCATACGATCGTACCCATCGACCACTTGACCTTGCC
CACCATTGTTCGTTAGATCTGGGACGAGGGCGCGGACCATAGTTATTGGT
GGAACGCTGCGTTACGGGAGTCGTCGCCCGTGAAGCCCTTGGCCTTCGAG
GAAGGTCTCGTGGGAATGCGAGTATGGCTGACTCGTCCGACGTCCGCAGG
CCTGGCGGGGGAGGGTCAACTCACACGGTGAGAGTTGTCGTCACCGCACG
GCGAATGCTAGGTAGAAATGTGTCATCAGCTGCGCGGTGCCTACCGGTGT
CCATTCAGTCAGGTCGATCACTGACCAAAGAACTAATATTTGCGTTCTTC
AGGCCAGAAAAGGTACAAACACGAACAAAACAACACATAGTATAATGTGT
TCTTGCCATGTGTGAATTGCAGTTCGGTTCCGTCTGCTTATCCGCTCCGT
GTTTTGAATGGATGGGCAAAACAGGCTCAACCGCAAGAGGGTCAAACACC
GCCTAGAATTCGACAGTGGGGGGCGGAAATGGATCAACCTCGACGACGAG
CAAGTGAGAGTAACATTCTCCTCACGTAAACCAGGGGGGTGAAAGAGATG
AGTCATGATGTTTTGGGGGGCGAATTGCGGGGCGCAGGTTGTCCTTCGAG
GTACGTTTGAAGTACCTTATTAGTACTTGAAGTTTTAACGAAGGGATTGG
GGGACCTCACGAAAAATATGCCCCCGTCAATATGTGAGATGGAAGCGCCA
TGCAAATCCCTGTGCCCCCCTGTACACAATATACCTCCTGTGCAAGGACG
TCATGATGGTGCGGAGCAACGGGGCATGGGTGCAGCTGAGAAATTTCATC
GAGCCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGAGATGCTAAGCAGGAG
GCGAAGAGCCAACCAGCACCTATTCGACAGGGAGCAAAGGCACGAGCGAA
CCTGA
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Coding sequence (CDS) from alignment at Scaffold_106:196585..199439+

>EsuBft1180_6a-0001 ID=EsuBft1180_6a-0001|Name=EsuBft1180_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_106:196585..199439+ (Ectocarpus subulatus male Bft15b)
ATGGGTGCCCAGGTTAAGAGCCAGATGGCGAGAGTCAAGCGAGCAAGGCA
CCGCACCGCAATCAAGCTTCAGGCGGCGTTCAGGGGGCACCGTGGGCGAG
GAGAGTGGAGAAGAGTGCACCAAGAGTGGAAGAAGAATAGCAGGGCGGCT
CGAAAGATCCAGAAGGTGTTTAGAGGCAGTCGCGTGATGAGTTGGCGAGA
TGTTCGTCTGAACAAGGTGGCGCAGCACGTGTTTATGAGGCAAGAGATGG
AGTTCCAGGAGAGGTTGGACGGCGGTCGTGCTCGCTACCAGCATCTCGTT
GACGAGGCCGGCAGGGACTCATGCAGCGAGGATGACGACGAAGCAGATGC
CACCGACCACTGGGAGGAGATCTGGGACGAGGGCGCGGACCATAGTTATT
GGTGGAACGCTGCGTTACGGGAGTCGTCGCCCGTGAAGCCCTTGGCCTTC
GAGGAAGGTCTCGTGGGAATGCGAGTATGGCTGACTCGTCCGACGTCCGC
AGGCCTGGCGGGGGAGGGTCAACTCACACGGTTGTCCTTCGAGGACGTCA
TGATGGTGCGGAGCAACGGGGCATGGGTGCAGCTGAGAAATTTCATCGAG
CCTGCCGTCGCCAAGGCCCGAGCGAGAAAAGAGATGCTAAGCAGGAGGCG
AAGAGCCAACCAGCACCTATTCGACAGGGAGCAAAGGCACGAGCGAACCT
GA
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