EsuBft1112_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1112_6a-0001
Unique Name	EsuBft1112_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:32837..35769 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LCG8
ProteomeId	EsuBft1112_6
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	238
Hectar predicted targeting category	other localisation
Evalue	0.0
EggNOG OGs	2CYV0@1\|root,2S6K7@2759\|Eukaryota
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-26_005000.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1112_6a	EsuBft1112_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 32837..35769 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1112_6a-0001-exon	agat-exon-1421	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 32837..34952 -
EsuBft1112_6a-0001-exon	agat-exon-1422	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 35224..35463 -
EsuBft1112_6a-0001-exon	EsuBft1112_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 35741..35769 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1112_6a-0001-cds	EsuBft1112_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 32837..34952 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1112_6a-0001	EsuBft1112_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 32837..35769 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:32837..35769-
coding sequence from alignment at Scaffold_189:32837..35769-

spliced messenger RNA

>EsuBft1112_6a-0001 ID=EsuBft1112_6a-0001|Name=EsuBft1112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2385bp|location=Sequence derived from alignment at Scaffold_189:32837..35769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTGTTTCGCGTACCATACTTCAAGGTTCAGCAGGTGGAAAGAAC
AGCAAAGCTACCTGAGGATTTAGCAGCAGTCCTACAGCTGCAGACACCCA
TCGGCCAATGGAAGCTTTGCAAGCGTCTTTACCGTGCTCTCGGACACACG
CCCGCTAGCATACCATCTCCTCCCGAAGGGGTCAAGGACGGGCGCTGGGC
GACAGCGTTGGCAGTGACCTTCTTGCGGCGCAGGCCAGACTTGATCGACC
TCACGTATGAGGCTTATAGCCGAGCGATCGCTTGGGTCGACGAGCCGCTC
CTCGCGCAGGCACACAGCCGTCTTCCGCCAGCCGACCTCTACTACCCCGT
GGACGAAGCGGCGTCACGGCAAGGCCGATGGCAGCAGCAGGCCGAGGAGG
CTCTAGAGGAGTGCGGATACGCCTACTTTTTGCCTTCGCCCTCTACTGCT
GCTGCAGACCACAGATGCGGCGGCGGCGAAGAAGGTGATGATGGTGCTGC
TGCACCCCGCCGCCACGTCCCGACGACCTCGAACTTGTCACCGGCGCGTG
CGAAATCCGATAGCACCACCACCAGCAGCAGCAGCAGCCACGTCTCTGGA
GAGATGGAACGCCAGGGGGTGAAGGTATTCCCCTCAGCGACCGCTACCGC
TCCCTGCGTAAGGAGACGAGGCCGACGGCGGGGAGTGTCGGCGAAGTCAC
GCCTCAAGGCCATGGCGGCCGCGAGGCATCAAGAAACGCTTGAGCAGCAG
TCGCAAGGCCTACACCTAGAGATGAAGCGCGCCATGAAGGTGGCCACCAC
GACCTTCAGAGAAGGCGACAGGGTGGAGAGCCGCTGGCGCCGTCCCACCC
GGCTCGACAAAGCAAAGATCGATCCAGGCGCCTGGCACCCCGGCCGTGTG
GTCCAGAGCCACAAGGGCGGCGACAGGGTGGACGTGGTGTTCGAGGACGG
AGACGGCGAGCGCCTGAGCGGTATATCTACCAAGCATGTCCGACTAGCTC
CGCCCCCTTCTTCCTCAGAACGCCCTCCCCTCGTGAGCTCCGGTAGGGAC
GATGATTACGTGACGGCTGCCGGGGTGACGGGAAGAAGAAATAGCTGCGA
CCGACGGCCGTCGTGCGCCCCGACGCCCGCGCCGACCGAGCTGGTGTGCT
CGGCGATCCGTCGCGAGCTCGCGCACATCGCGTGTGCGACCAAGTCCTTG
CGTTGCACCTGGGAAGTCCCCGTGCCTATCAGCCAGGAGATGGCGAGGCT
CAGGATGCTGGAGGAGCGCAAGATGCGCAGTCGGCCGGAATGGCGCGGAT
CGTTTCCCCTAGTCGACTTCAGCGCGACGAAAAGGCTGCCATTCGGGGCC
GGCGGGATGGCCAGGACGGTCGTGCGGAAAGTAAAAAATACTGCCGCATC
GGCGGTTTCCGCGGTGTTAGCCACTCGCGATCATCAGCTGCAGGCGCAGA
GTACCGTTCGCGACGATAGCAGGACGAGGTTGCGAACGGTACAGTCGTCA
CCCTCGTCCTCACTCAAGATGCCGATGACGGTCCCACAAGTACAGCGAGA
TGAGAACGATGACCGTGACCTGGGGCAAGGAGATAGGTGCACTTCCACTG
ACGACAACACGGTCAAGGAGACCAACGCGAGGAGCGCCGGCAAAAGGCGT
TCTTCATCGTCCTCGCCATCTCCCGCGGCGGTGGCGGCGGCGGGCGTGGC
AGCGGCGGCAGGGGCGGAGGCGGCCGGGGCGACGGCTCTCTTAGCGGCAC
AGGCGAAGCTCGTCTCCGCTGCCGTGGCGTACGACAGGTGCGTGGCTGGC
GTCCGCGACTGCCTCGACAGGGGCTGCGCCGCGTTCCGTCTGGCTCGCAC
GTACTCCGAGCAGCAGAAAGCTTTCGAGGAGTCGACGGCTACGTTAGGCC
CCGCACAGCCCGCGCGAGCCGGCTACAAGGACTGGCGAGGGAGTCCCGTG
GTGGGGCTGCAGAGCGCCACGCTCGATGTCGTGGAGGCCATGGACGATTG
GGCGGCGGAGTGGGCGGTGGCCAAAGGTGGCAAAACGGATGCCGGGGGGG
GAGATAACGCGTTTGCAGAGGAAGGAGTCGTGCTAAAAGACGGCGCTGTG
GAGGAAGTCGCTGTCGCGGCGCCGCCGTTTCTGTGGGAAGGGTCGCCGTT
GGTGTCAACGGTCATCGGCCAAAGCGCCAAGCTTGTTGCCGGCGCGCCGG
AACTCAAGGAGTGGTACGGTCCCGGGTTCCCGATCGAGCGGAACCCTTTC
TTTCTCGCTTATCCGGTGGACGACCGACCCGTTACCCCACGCAGCGCTCT
CGTCCGGGCTTGGGTTAACGGGGAGGTAAGCGGTCGGATGGTGGTGGATA
CGAGCGTGTGCAACCAGGAATTCGTCGCTGAGTAA

protein sequence of EsuBft1112_6a-0001

>EsuBft1112_6 ID=EsuBft1112_6|Name=EsuBft1112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=794bp
MNLFRVPYFKVQQVERTAKLPEDLAAVLQLQTPIGQWKLCKRLYRALGHT
PASIPSPPEGVKDGRWATALAVTFLRRRPDLIDLTYEAYSRAIAWVDEPL
LAQAHSRLPPADLYYPVDEAASRQGRWQQQAEEALEECGYAYFLPSPSTA
AADHRCGGGEEGDDGAAAPRRHVPTTSNLSPARAKSDSTTTSSSSSHVSG
EMERQGVKVFPSATATAPCVRRRGRRRGVSAKSRLKAMAAARHQETLEQQ
SQGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRV
VQSHKGGDRVDVVFEDGDGERLSGISTKHVRLAPPPSSSERPPLVSSGRD
DDYVTAAGVTGRRNSCDRRPSCAPTPAPTELVCSAIRRELAHIACATKSL
RCTWEVPVPISQEMARLRMLEERKMRSRPEWRGSFPLVDFSATKRLPFGA
GGMARTVVRKVKNTAASAVSAVLATRDHQLQAQSTVRDDSRTRLRTVQSS
PSSSLKMPMTVPQVQRDENDDRDLGQGDRCTSTDDNTVKETNARSAGKRR
SSSSSPSPAAVAAAGVAAAAGAEAAGATALLAAQAKLVSAAVAYDRCVAG
VRDCLDRGCAAFRLARTYSEQQKAFEESTATLGPAQPARAGYKDWRGSPV
VGLQSATLDVVEAMDDWAAEWAVAKGGKTDAGGGDNAFAEEGVVLKDGAV
EEVAVAAPPFLWEGSPLVSTVIGQSAKLVAGAPELKEWYGPGFPIERNPF
FLAYPVDDRPVTPRSALVRAWVNGEVSGRMVVDTSVCNQEFVAE

mRNA from alignment at Scaffold_189:32837..35769-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1112_6a-0001 ID=EsuBft1112_6a-0001|Name=EsuBft1112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2933bp|location=Sequence derived from alignment at Scaffold_189:32837..35769- (Ectocarpus subulatus male Bft15b)
ATGAATCTGTTTCGCGTACCATACTTCAAGTACATGAGTAAGCACACCAA
AGAGAACGGCTTTCCAACTTTTTACTACAATCGTCCCATCCACATCTGCA
TACATTCTGTAAGATACATATCGTACATCTAGACCTATTCTTGGGGACAG
TTTCTACACCTTCGGGCGCAAAAATGACAGTTGTAGTCTAGTACAGGTCA
TCCTGTGGCATATGCGTACATGAACTTTACAATACATAACTTTCGTTCGC
TGTGCATGCAGCCCTCATTAATTGAGCGTGCCCTCTTTCTGGCCAATCTC
TCGCAGGGTTCAGCAGGTGGAAAGAACAGCAAAGCTACCTGAGGATTTAG
CAGCAGTCCTACAGCTGCAGACACCCATCGGCCAATGGAAGCTTTGCAAG
CGTCTTTACCGTGCTCTCGGACACACGCCCGCTAGCATACCATCTCCTCC
CGAAGGGGTCAAGGACGGGCGCTGGGCGACAGCGTTGGCAGTGACCTTCT
TGCGGCGCAGGCCAGACTTGATCGACCTCACGTATGAGGCTTATAGGTGA
GGGGAAAGTGCGTGGTGGATACGTAGTTTTTCCATCGAACCGGGCTTGAG
GTTGTGCAAACGGCACTGACTCGTCAACAGTATTAAAGAAACCGTCGTAC
ACCCCTGCAGTAGGTGGTGGGGTCCTGCTGTCGTCTGTTACCCGCAATGC
GCTCGTCCTCATGCTCGCCTTTCCTTTCTGCGACGCACGAATAGTAACGT
AGGTCTCGCCGTCTCACCTCTCAGACTATTTCCCGTCCAACTCTTGCCCG
CTCGACCAACGCAATAGCCGAGCGATCGCTTGGGTCGACGAGCCGCTCCT
CGCGCAGGCACACAGCCGTCTTCCGCCAGCCGACCTCTACTACCCCGTGG
ACGAAGCGGCGTCACGGCAAGGCCGATGGCAGCAGCAGGCCGAGGAGGCT
CTAGAGGAGTGCGGATACGCCTACTTTTTGCCTTCGCCCTCTACTGCTGC
TGCAGACCACAGATGCGGCGGCGGCGAAGAAGGTGATGATGGTGCTGCTG
CACCCCGCCGCCACGTCCCGACGACCTCGAACTTGTCACCGGCGCGTGCG
AAATCCGATAGCACCACCACCAGCAGCAGCAGCAGCCACGTCTCTGGAGA
GATGGAACGCCAGGGGGTGAAGGTATTCCCCTCAGCGACCGCTACCGCTC
CCTGCGTAAGGAGACGAGGCCGACGGCGGGGAGTGTCGGCGAAGTCACGC
CTCAAGGCCATGGCGGCCGCGAGGCATCAAGAAACGCTTGAGCAGCAGTC
GCAAGGCCTACACCTAGAGATGAAGCGCGCCATGAAGGTGGCCACCACGA
CCTTCAGAGAAGGCGACAGGGTGGAGAGCCGCTGGCGCCGTCCCACCCGG
CTCGACAAAGCAAAGATCGATCCAGGCGCCTGGCACCCCGGCCGTGTGGT
CCAGAGCCACAAGGGCGGCGACAGGGTGGACGTGGTGTTCGAGGACGGAG
ACGGCGAGCGCCTGAGCGGTATATCTACCAAGCATGTCCGACTAGCTCCG
CCCCCTTCTTCCTCAGAACGCCCTCCCCTCGTGAGCTCCGGTAGGGACGA
TGATTACGTGACGGCTGCCGGGGTGACGGGAAGAAGAAATAGCTGCGACC
GACGGCCGTCGTGCGCCCCGACGCCCGCGCCGACCGAGCTGGTGTGCTCG
GCGATCCGTCGCGAGCTCGCGCACATCGCGTGTGCGACCAAGTCCTTGCG
TTGCACCTGGGAAGTCCCCGTGCCTATCAGCCAGGAGATGGCGAGGCTCA
GGATGCTGGAGGAGCGCAAGATGCGCAGTCGGCCGGAATGGCGCGGATCG
TTTCCCCTAGTCGACTTCAGCGCGACGAAAAGGCTGCCATTCGGGGCCGG
CGGGATGGCCAGGACGGTCGTGCGGAAAGTAAAAAATACTGCCGCATCGG
CGGTTTCCGCGGTGTTAGCCACTCGCGATCATCAGCTGCAGGCGCAGAGT
ACCGTTCGCGACGATAGCAGGACGAGGTTGCGAACGGTACAGTCGTCACC
CTCGTCCTCACTCAAGATGCCGATGACGGTCCCACAAGTACAGCGAGATG
AGAACGATGACCGTGACCTGGGGCAAGGAGATAGGTGCACTTCCACTGAC
GACAACACGGTCAAGGAGACCAACGCGAGGAGCGCCGGCAAAAGGCGTTC
TTCATCGTCCTCGCCATCTCCCGCGGCGGTGGCGGCGGCGGGCGTGGCAG
CGGCGGCAGGGGCGGAGGCGGCCGGGGCGACGGCTCTCTTAGCGGCACAG
GCGAAGCTCGTCTCCGCTGCCGTGGCGTACGACAGGTGCGTGGCTGGCGT
CCGCGACTGCCTCGACAGGGGCTGCGCCGCGTTCCGTCTGGCTCGCACGT
ACTCCGAGCAGCAGAAAGCTTTCGAGGAGTCGACGGCTACGTTAGGCCCC
GCACAGCCCGCGCGAGCCGGCTACAAGGACTGGCGAGGGAGTCCCGTGGT
GGGGCTGCAGAGCGCCACGCTCGATGTCGTGGAGGCCATGGACGATTGGG
CGGCGGAGTGGGCGGTGGCCAAAGGTGGCAAAACGGATGCCGGGGGGGGA
GATAACGCGTTTGCAGAGGAAGGAGTCGTGCTAAAAGACGGCGCTGTGGA
GGAAGTCGCTGTCGCGGCGCCGCCGTTTCTGTGGGAAGGGTCGCCGTTGG
TGTCAACGGTCATCGGCCAAAGCGCCAAGCTTGTTGCCGGCGCGCCGGAA
CTCAAGGAGTGGTACGGTCCCGGGTTCCCGATCGAGCGGAACCCTTTCTT
TCTCGCTTATCCGGTGGACGACCGACCCGTTACCCCACGCAGCGCTCTCG
TCCGGGCTTGGGTTAACGGGGAGGTAAGCGGTCGGATGGTGGTGGATACG
AGCGTGTGCAACCAGGAATTCGTCGCTGAGTAA

Coding sequence (CDS) from alignment at Scaffold_189:32837..35769-

>EsuBft1112_6a-0001 ID=EsuBft1112_6a-0001|Name=EsuBft1112_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2385bp|location=Sequence derived from alignment at Scaffold_189:32837..35769- (Ectocarpus subulatus male Bft15b)
ATGAATCTGTTTCGCGTACCATACTTCAAGGTTCAGCAGGTGGAAAGAAC
AGCAAAGCTACCTGAGGATTTAGCAGCAGTCCTACAGCTGCAGACACCCA
TCGGCCAATGGAAGCTTTGCAAGCGTCTTTACCGTGCTCTCGGACACACG
CCCGCTAGCATACCATCTCCTCCCGAAGGGGTCAAGGACGGGCGCTGGGC
GACAGCGTTGGCAGTGACCTTCTTGCGGCGCAGGCCAGACTTGATCGACC
TCACGTATGAGGCTTATAGCCGAGCGATCGCTTGGGTCGACGAGCCGCTC
CTCGCGCAGGCACACAGCCGTCTTCCGCCAGCCGACCTCTACTACCCCGT
GGACGAAGCGGCGTCACGGCAAGGCCGATGGCAGCAGCAGGCCGAGGAGG
CTCTAGAGGAGTGCGGATACGCCTACTTTTTGCCTTCGCCCTCTACTGCT
GCTGCAGACCACAGATGCGGCGGCGGCGAAGAAGGTGATGATGGTGCTGC
TGCACCCCGCCGCCACGTCCCGACGACCTCGAACTTGTCACCGGCGCGTG
CGAAATCCGATAGCACCACCACCAGCAGCAGCAGCAGCCACGTCTCTGGA
GAGATGGAACGCCAGGGGGTGAAGGTATTCCCCTCAGCGACCGCTACCGC
TCCCTGCGTAAGGAGACGAGGCCGACGGCGGGGAGTGTCGGCGAAGTCAC
GCCTCAAGGCCATGGCGGCCGCGAGGCATCAAGAAACGCTTGAGCAGCAG
TCGCAAGGCCTACACCTAGAGATGAAGCGCGCCATGAAGGTGGCCACCAC
GACCTTCAGAGAAGGCGACAGGGTGGAGAGCCGCTGGCGCCGTCCCACCC
GGCTCGACAAAGCAAAGATCGATCCAGGCGCCTGGCACCCCGGCCGTGTG
GTCCAGAGCCACAAGGGCGGCGACAGGGTGGACGTGGTGTTCGAGGACGG
AGACGGCGAGCGCCTGAGCGGTATATCTACCAAGCATGTCCGACTAGCTC
CGCCCCCTTCTTCCTCAGAACGCCCTCCCCTCGTGAGCTCCGGTAGGGAC
GATGATTACGTGACGGCTGCCGGGGTGACGGGAAGAAGAAATAGCTGCGA
CCGACGGCCGTCGTGCGCCCCGACGCCCGCGCCGACCGAGCTGGTGTGCT
CGGCGATCCGTCGCGAGCTCGCGCACATCGCGTGTGCGACCAAGTCCTTG
CGTTGCACCTGGGAAGTCCCCGTGCCTATCAGCCAGGAGATGGCGAGGCT
CAGGATGCTGGAGGAGCGCAAGATGCGCAGTCGGCCGGAATGGCGCGGAT
CGTTTCCCCTAGTCGACTTCAGCGCGACGAAAAGGCTGCCATTCGGGGCC
GGCGGGATGGCCAGGACGGTCGTGCGGAAAGTAAAAAATACTGCCGCATC
GGCGGTTTCCGCGGTGTTAGCCACTCGCGATCATCAGCTGCAGGCGCAGA
GTACCGTTCGCGACGATAGCAGGACGAGGTTGCGAACGGTACAGTCGTCA
CCCTCGTCCTCACTCAAGATGCCGATGACGGTCCCACAAGTACAGCGAGA
TGAGAACGATGACCGTGACCTGGGGCAAGGAGATAGGTGCACTTCCACTG
ACGACAACACGGTCAAGGAGACCAACGCGAGGAGCGCCGGCAAAAGGCGT
TCTTCATCGTCCTCGCCATCTCCCGCGGCGGTGGCGGCGGCGGGCGTGGC
AGCGGCGGCAGGGGCGGAGGCGGCCGGGGCGACGGCTCTCTTAGCGGCAC
AGGCGAAGCTCGTCTCCGCTGCCGTGGCGTACGACAGGTGCGTGGCTGGC
GTCCGCGACTGCCTCGACAGGGGCTGCGCCGCGTTCCGTCTGGCTCGCAC
GTACTCCGAGCAGCAGAAAGCTTTCGAGGAGTCGACGGCTACGTTAGGCC
CCGCACAGCCCGCGCGAGCCGGCTACAAGGACTGGCGAGGGAGTCCCGTG
GTGGGGCTGCAGAGCGCCACGCTCGATGTCGTGGAGGCCATGGACGATTG
GGCGGCGGAGTGGGCGGTGGCCAAAGGTGGCAAAACGGATGCCGGGGGGG
GAGATAACGCGTTTGCAGAGGAAGGAGTCGTGCTAAAAGACGGCGCTGTG
GAGGAAGTCGCTGTCGCGGCGCCGCCGTTTCTGTGGGAAGGGTCGCCGTT
GGTGTCAACGGTCATCGGCCAAAGCGCCAAGCTTGTTGCCGGCGCGCCGG
AACTCAAGGAGTGGTACGGTCCCGGGTTCCCGATCGAGCGGAACCCTTTC
TTTCTCGCTTATCCGGTGGACGACCGACCCGTTACCCCACGCAGCGCTCT
CGTCCGGGCTTGGGTTAACGGGGAGGTAAGCGGTCGGATGGTGGTGGATA
CGAGCGTGTGCAACCAGGAATTCGTCGCTGAGTAA