EsuBft1095_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1095_4a-0001
Unique NameEsuBft1095_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_3contigScaffold_3:215608..218602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0Q1
ProteomeIdEsuBft1095_4
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR023210
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length41
Hectar predicted targeting categorychloroplast
Evalue7.57e-19
EggNOG OGsCOG0667@1|root,2QU2T@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameAKR7A2
KEGG rclassRC00099
KEGG koko:K15303
KEGG ReactionR09412,R09413,R09414,R09415
KEGG Pathwayko00980,map00980
GOsGO:0003674,GO:0003824,GO:0004032,GO:0004033,GO:0004301,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005975,GO:0006066,GO:0006081,GO:0006091,GO:0006725,GO:0006805,GO:0006807,GO:0008106,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009987,GO:0012505,GO:0016137,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016801,GO:0016803,GO:0016999,GO:0017144,GO:0019118,GO:0019119,GO:0019748,GO:0022900,GO:0030638,GO:0030647,GO:0034308,GO:0042180,GO:0042221,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043387,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044597,GO:0044598,GO:0046222,GO:0046223,GO:0046483,GO:0046700,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070887,GO:0071466,GO:0071704,GO:0097164,GO:0098754,GO:1901135,GO:1901360,GO:1901361,GO:1901376,GO:1901377,GO:1901575,GO:1901615,GO:1901657,GO:1901661,GO:1902644
Descriptionphenanthrene-epoxide hydrolase activity
COG categoryC
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_4aEsuBft1095_4aEctocarpus subulatus male Bft15bgeneScaffold_3 215608..218602 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_4a-0001-exonagat-exon-5885Ectocarpus subulatus male Bft15bexonScaffold_3 215608..215748 +
EsuBft1095_4a-0001-exonagat-exon-5884Ectocarpus subulatus male Bft15bexonScaffold_3 217942..218052 +
EsuBft1095_4a-0001-exonEsuBft1095_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_3 218436..218602 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_4a-0001-exonagat-five_prime_utr-577Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_3 215608..215666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_4a-0001-cdsEsuBft1095_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_3 215667..215748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1095_4a-0001EsuBft1095_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_3 215667..218602 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1095_4a-0001 ID=EsuBft1095_4a-0001|Name=EsuBft1095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=419bp|location=Sequence derived from alignment at Scaffold_3:215608..218602+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCCAAGGCCGCCTGGCTGTGCAGAGCAGGCAGCGCCAACCCCAGGCGTT
GGGAGTCGCATGGTATCTCTTGCCCCCGGGAGACTTCTCTCTGCTAGTAC
CGGGAGGATCGGGACACTGGCTTTCCTAATTGCGGCTTCGAGCACCACGG
CGTCTGCTTTGAGAATGGCCGCCACAAATACTGCTGCTGCTGCTGCTGCT
GCTGCTGCATCTCGCGGTGGAGTTGTGCGGAAAATGGCCAACGACGCTGC
GTCAACCCGCGTCGCAACCGTCCTGGGCACCATGTCGATCCCTGCGCCGC
TCGACGCTGAGGCCACGCGAGAGGCCCTCGACTACTTCGCTGCCCGCGGC
TTCGACCAGATCGACACGGCGATCATGTACCAGGGGGGCAAGTCCGAGGC
GACGCTAGGTGTGTTGTAG
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protein sequence of EsuBft1095_4a-0001

>EsuBft1095_4 ID=EsuBft1095_4|Name=EsuBft1095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MVSLAPGRLLSASTGRIGTLAFLIAASSTTASALRMAATNTAAAAAAAAA
SRGGVVRKMANDAASTRVATVLGTMSIPAPLDAEATREALDYFAARGFDQ
IDTAIMYQGGKSEATLGVL
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mRNA from alignment at Scaffold_3:215608..218602+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1095_4a-0001 ID=EsuBft1095_4a-0001|Name=EsuBft1095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2995bp|location=Sequence derived from alignment at Scaffold_3:215608..218602+ (Ectocarpus subulatus male Bft15b)
AGCCAAGGCCGCCTGGCTGTGCAGAGCAGGCAGCGCCAACCCCAGGCGTT
GGGAGTCGCATGGTATCTCTTGCCCCCGGGAGACTTCTCTCTGCTAGTAC
CGGGAGGATCGGGACACTGGCTTTCCTAATTGCGGCTTCGAGTGAGTTTG
GATGAGCATTTTCAACCAAGAGCGAGATTCGTTGCCCTGTTCCACAAGAC
ACAAGACCCGCCGCATCATCATGTTCTAAACAACAGCGCTACATACAGCA
GCCGCTGCTGTCTCATACCGAACCGTTATATCGATGTGTGCGTATCGCGT
TGCGACGTGGTGTTGCTGGCCGCTGGGGGAAAAATATTATGTGCTCGAAG
CCCGTGCAACGTGTCATTCATTCGTGAGCTTCAAGAGTTTGTGGATGGCT
TCATGTGCAACTGTATGCTGCCGCTGTTGCTGCTGCGGGGTTTTGGCAGA
CCATTTCCGCTCGTGCGTGCAGTCGCGAGTGCAATCGGAATCTTCACGCA
TGGGACAGATCATGAGCTAGCCCGCCTATGCCTTACAGATCACCATGATC
GAGTAAAAATACCCCGGTCACCTTTTTCCTTCAGATGGCCAACAACAGGG
CATACCCCGATCCCTTGGATAATGTCTTTCAGATCAACTTCTGCATACAG
CAAGACAAACATGACTAGGACATCGCTGATGCTTTTCTGGATCAACGCGG
GCAAACACAGCCCACCTACCGATTCTTTCAGATCAACTCGGGGTAGACAT
GTGCGTCTTTCGGATCAACTCGGGTCAACATGGCCCAACCACTTGTGTCC
TTCAGATCAACTCGGGCAAACGTAGCCCAATCGCCGATTCTTTCAGATCA
AGTCGGGCAAACACAGCCCAATCACCTGGGCTTTCAGATCAACTCGGGCA
AGCATAACGCGATTACTATTATACTATAATACGCCCTTTCAGATCACGCC
GGGCAAACAAGAACATACACAGATCACGTATGTCCTTCACCACCATGGAG
CAAGCATAGGACACTGTATGTACCTACCCTATGGAGCTACCGGCACCAAC
CACAAGTTAACACACCCTTTGAACGAGTTGGCACGATCTGTGGGATCTCG
TCAGTGTTGGAATACTCAATGTCAGTACTGCTGAAAACGAACAGCACGTA
TATACTCACCTAAGGAGTATTACCGGAATGGTCTTCGGTATGTTATCCAG
TAATCGGATCATTGTACACATCTACGGGTTATACTCTGTCCCACCCATGT
GTGCAATATTTTCATCTTTTTGCGTGTCCACCTTCCTTTTCAATTGCTCT
CTTGCTGACGTACCGAGGATTCGACTCCAAACATGATGGTTTGAGAGTTC
ATCTCACCCGCTGGCTTCAAGATTCCACGTTAGACGATGTTGTTGCCTAC
TATCGCGATGTGTATGCTTATCCATGCAGTAGCGGTAGTCCCGATGTACA
TACCGCGGTCCGACTAGTGCGGGTGGGTTCAGAAACACCGCGGTAAGAAT
TCGCTTGTCACGGGATTTGTCACCATTATGCTGGATATTACGCAACACTC
AATAGTGCGGTGTCCCGATACATATAACAGCGCAGTTGTGTTTTGCCTGT
CACGTGTCCATTTTTTTGCCTGTCACAAGTAGTGATTAAGCTATGTTAGG
GTATGTTAGCCTGTGACCACGGGAATCGACCGGTCAAGTGCTTGATTAGG
ACGGGCAGATGAAGGCACCGGGTAGAGAGATTGGATTTTTTTTTGTGAAA
ACAACAGCAACAACAACAACAACAACAACAACAACAACAACGACAACACC
GCGGTGTATATCAAGATGTGTACGAGGATGTTGTTCCATGGTCTGCATTT
CGGTCGCGGTAGTCGGAAGGCCCACACCTTGTCTGTGTCCCTCTAGTATG
TATACCATATGTACCTAAGCACGCCGGGAGGGCCAAATCGCGCTTGGATG
GCCTGCGGTCTCCCGATACCACTGCCGTCGTCTTGTCGACAATGACACTA
AGCAGAGATTGTTGCTCTCTCAAAGGACGCTAAGGTTCGTCCGCGGGTGT
TGCTGTGTGTGTGTACGATGAACGACCGACCCACGAAACCTAACCTCCCC
GTTCCTCCCCATTCCTCCCCGTGTTTTTCCTTCTACTCCATCTTGTTGTT
GTTGTTGTTCTTTTTCGTTCGCACTGTCTGCCTTCTCCCTCCCTTTTCTT
GCCCTCGACTATGAGTACACCCCCTCTGTTTCTTGCTTGGTGACTTTCAC
GTGGTTCTCTGCGGTTCGCTCCTCGATATGTTGCGGCCGTTTCATGCACA
GTACCCCNCAGTCCCCCCCCCCCCTGCCAAGCAGGCACCACGGCGTCTGC
TTTGAGAATGGCCGCCACAAATACTGCTGCTGCTGCTGCTGCTGCTGCTG
CATCTCGCGGTGGAGTTGTGCGGAAAATGGCCAACGACGCTGCGTGTGAG
AGAACCTCATTGTGTTGAGTTGGAAGAAGTGTTCACACAATGTAGCGCCA
TCGTGTTGGCCGATACCACCAACGGTCCGCCTTCTACGAGACGATTTGCC
GAAAAACTGCCTAACGCGTCCATCGCACCCCACACACCCCTGTTGCTTTT
CTGAAAAACATGTAGCGGGATAAACGAGAAACGTGCCCCTTGGGTACAAA
GGTAGTTCATGCACGACTCTGGTCGACTGGGTAGAGCTGCGACGGACACA
GCAAAGTGAACCTGCTTGTTGTATTTTGTGTGCTCTCGTACAACACAGCG
CCTGCTCCTCTCTCGCCCCACCCTACCACACATTGTTCCATGTTTCTGCT
GTGGCTCATCACGCAACATCAGCAACAGCAACCCGCGTCGCAACCGTCCT
GGGCACCATGTCGATCCCTGCGCCGCTCGACGCTGAGGCCACGCGAGAGG
CCCTCGACTACTTCGCTGCCCGCGGCTTCGACCAGATCGACACGGCGATC
ATGTACCAGGGGGGCAAGTCCGAGGCGACGCTAGGTGTGTTGTAG
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Coding sequence (CDS) from alignment at Scaffold_3:215608..218602+

>EsuBft1095_4a-0001 ID=EsuBft1095_4a-0001|Name=EsuBft1095_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_3:215608..218602+ (Ectocarpus subulatus male Bft15b)
ATGGTATCTCTTGCCCCCGGGAGACTTCTCTCTGCTAGTACCGGGAGGAT
CGGGACACTGGCTTTCCTAATTGCGGCTTCGAGCACCACGGCGTCTGCTT
TGAGAATGGCCGCCACAAATACTGCTGCTGCTGCTGCTGCTGCTGCTGCA
TCTCGCGGTGGAGTTGTGCGGAAAATGGCCAACGACGCTGCGTCAACCCG
CGTCGCAACCGTCCTGGGCACCATGTCGATCCCTGCGCCGCTCGACGCTG
AGGCCACGCGAGAGGCCCTCGACTACTTCGCTGCCCGCGGCTTCGACCAG
ATCGACACGGCGATCATGTACCAGGGGGGCAAGTCCGAGGCGACGCTAGG
TGTGTTGTAG
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