EsuBft1080_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1080_9a-0001
Unique NameEsuBft1080_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_412contigScaffold_412:450375..452799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV48939
ProteomeIdEsuBft1080_9
Protein domainsIPR013103
Protein domainsSSF56672
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length1693
Hectar predicted targeting categoryother localisation
Evalue5.51e-59
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0005515
EC3.1
GO0016779
GO0003824
GO0004518
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9aEsuBft1080_9aEctocarpus subulatus male Bft15bgeneScaffold_412 450375..452799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9a-0001EsuBft1080_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_412 450396..452771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9a-0001-exonagat-exon-63091Ectocarpus subulatus male Bft15bexonScaffold_412 450375..450494 -
EsuBft1080_9a-0001-exonEsuBft1080_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_412 450594..450989 -
EsuBft1080_9a-0001-exonagat-exon-63090Ectocarpus subulatus male Bft15bexonScaffold_412 451320..452184 -
EsuBft1080_9a-0001-exonagat-exon-63092Ectocarpus subulatus male Bft15bexonScaffold_412 452488..452799 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9a-0001-exonagat-three_prime_utr-762Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_412 450375..450395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9a-0001-cdsEsuBft1080_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_412 450396..450494 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1080_9a-0001-exonagat-five_prime_utr-487Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_412 452772..452799 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1080_9a-0001 ID=EsuBft1080_9a-0001|Name=EsuBft1080_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1693bp|location=Sequence derived from alignment at Scaffold_412:450375..452799- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCAGAGAGTGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGC
AAGCGACGCCGTTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGGG
ATTCCGGGGGACGGAGGCAGCGTTCCCCGGTCACCCCCTTTGGGAAGGGG
CGCTTTCGGCGGAGGCAGTGACAGCCCCACCGACAGCAGCAGCAGCAGCA
GCAGTGACGCCGGCGATGCCGGCGGCCCGGGCGGCGAAGAGTCCGGCGAC
CCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCCGAGAACCT
CGAGGAGTTGAAGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGTATGACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGA
AGCAGTACCGATGACGTACAAGGATATGATGTGTTCCAAGTACAAGGTTT
TCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGA
ACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTC
AAAGTGGGTGTTATCTTGGAAGACGAATGAGAACGGTCTGACAGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCGAC
TTCCACCACTCATCCTTAGCGTGCCCGTCTGCAGCGTCTATCAAGACGGT
GATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCAATGGGATGTGA
AGCAAGCGTACATCCACGCTAAGCTAAAAGAAGAAATATACCTCAGGTTC
CCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGC
CCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGTGGTTTGAAGCTGCCG
ATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGTGTC
TTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTACGT
TGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGGAGTTGTTCG
CTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGTGTACCTGG
TACGACGGGTGTGCTATCGCCATGGATCTGTCCCAGACAGCATACATTGA
GAGTATGCTGAAGCGGTTTGATGTGACCACGAACGCTTTCACCCCTGCTG
CCACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGAT
AAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAG
GCCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCACTCAC
CCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGAAC
TTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGTTAGCTGTGACCGACGCGTTGTTTGGGCGTGGCGTTCTG
TCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGGTCAAGTCCTTGAGGAC
AACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAG
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protein sequence of EsuBft1080_9a-0001

>EsuBft1080_9 ID=EsuBft1080_9|Name=EsuBft1080_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=547bp
MEARGPGQATPFVREEAPTAPGNGIPGDGGSVPRSPPLGRGAFGGGSDSP
TDSSSSSSSDAGDAGGPGGEESGDPGGDGGSDGDPGDSENLEELKREMQE
VLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVEAVPMTYKDM
MCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTN
ENGLTVDFKARMVARGFSQIPGIDFHHSSLACPSAASIKTVIAVATEKGK
KLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGR
EWWFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADE
GEREELFASLNKKFPVKDLGECTWYDGCAIAMDLSQTAYIESMLKRFDVT
TNAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK
LQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYA
DNEVDRRSTTGLAVTDALFGRGVLSFIAPETSGAKVKSLRTTRGLSP
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mRNA from alignment at Scaffold_412:450375..452799-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1080_9a-0001 ID=EsuBft1080_9a-0001|Name=EsuBft1080_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2425bp|location=Sequence derived from alignment at Scaffold_412:450375..452799- (Ectocarpus subulatus male Bft15b)
CTCAGAGAGTGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGC
AAGCGACGCCGTTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGGG
ATTCCGGGGGACGGAGGCAGCGTTCCCCGGTCACCCCCTTTGGGAAGGGG
CGCTTTCGGCGGAGGCAGTGACAGCCCCACCGACAGCAGCAGCAGCAGCA
GCAGTGACGCCGGCGATGCCGGCGGCCCGGGCGGCGAAGAGTCCGGCGAC
CCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCCGAGAACCT
CGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTAACCCCGCGGGCTAG
AAGGGAAGAAACTCCTCTGGGGCGCCTCAGACGCTGGCCCGCTGCGCCAT
GGGCTTGAGAGTGGCCGCACGCGGAAGCAGACCCGAAGGATGCAAGGTGC
CAGGGGGATGCCGGGGCCCGGAGAAACACCGGGCCCGGAAGAGGCATTGC
TGGCGACTATCCTGGAAACTGGCGGGACGGGGATTGTTTAGGACTACATC
TGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTAT
GGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGC
AGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCA
GACCCACAGCTAAGTATGACCTCGCCAATCGGGCAGAAGCCGAGTGATGT
GGAAGCAGTACCGATGACGTACAAGGATATGATGTGTTCCAAGTACAAGG
TTTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACT
GGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGG
TTCAAAGTGGGTGTTATCTTGGAAGACGAATGAGAACGGTCTGACAGTCG
ACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATC
GACTTCCACCACTCATCCTTAGCGTGCCCGTCTGCAGCGTCTATCAAGAC
GGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCAATGGGATG
TGAAGCAAGCGTACATCCACGCTAAGCTAAAAGAAGAAATATACCTCAGG
TTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCG
TGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGTGGTTTGAAGCTG
CCGATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGT
GTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTA
CGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGGAGTTGT
TCGCTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGTGTACC
TGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATCACCAA
GCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGATGTGA
CCACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGCCGAAG
AGAGATGACGAGCCCGCGGTGGATAACCCTGTGAGGGAGGCGATCGGATG
CCTGATANACGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAG
AGGAATTGCTCGCTTCCCTCAAAAAGAAGTTTCCGGTGAAAGATCTGGGG
GCGTGAACCTGGTACGACGGGTGTGCTATCGCCATGGATATAGAAAATGG
CATCACCTAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGT
TTGATGTGACCACGAACGCTTTCACCCCTGCTGCCACCGATGCCGACCTA
GGGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGC
GATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGC
CTCTGAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGG
AACGCGCTTGTGCGGATCATGTCCTACCTGAACTTCACGAAGGACTTCGG
CATCACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATG
CCAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGTTAGCT
GTGACCGTAGGTGGTACCGTAGTGTGTGCATCCACCAAGACGCAGCCAGT
GACGGCTCAGTCCACCTCGGAAGCAGAGTATATGGCAGCCGGGGAGGGCG
TTAAGGACGCGTTGTTTGGGCGTGGCGTTCTGTCGTTCATAGCGCCCGAG
ACGAGTGGGGCGAAGGTCAAGTCCTTGAGGACAACAAGGGGGCTCTCGCC
TTAATCGAGAACCCGTTCAGCTCAG
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Coding sequence (CDS) from alignment at Scaffold_412:450375..452799-

>EsuBft1080_9a-0001 ID=EsuBft1080_9a-0001|Name=EsuBft1080_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1644bp|location=Sequence derived from alignment at Scaffold_412:450375..452799- (Ectocarpus subulatus male Bft15b)
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGGC
GCCGACGGCACCCGGCAACGGGATTCCGGGGGACGGAGGCAGCGTTCCCC
GGTCACCCCCTTTGGGAAGGGGCGCTTTCGGCGGAGGCAGTGACAGCCCC
ACCGACAGCAGCAGCAGCAGCAGCAGTGACGCCGGCGATGCCGGCGGCCC
GGGCGGCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTG
ATCCCGGCGACTCCGAGAACCTCGAGGAGTTGAAGCGCGAGATGCAGGAG
GTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGG
GTCTTCGCAACCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAATCG
GGCAGAAGCCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGGATATG
ATGTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAGAT
AGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCG
AGGGGCGGAAGGCCATAGGTTCAAAGTGGGTGTTATCTTGGAAGACGAAT
GAGAACGGTCTGACAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTT
CTCTCAAATCCCCGGCATCGACTTCCACCACTCATCCTTAGCGTGCCCGT
CTGCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAG
AAACTCGCTCAATGGGATGTGAAGCAAGCGTACATCCACGCTAAGCTAAA
AGAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCA
AGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGT
GAGTGGTGGTTTGAAGCTGCCGATGCCCTCATCGAGAATGGATACGAGCA
GTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCG
TAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGCGGCAGACGAG
GGAGAGCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGTTTCCGGTGAA
AGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATCGCCATGGATC
TGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGATGTGACC
ACGAACGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGCCGAAGAG
AGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCC
TGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAG
CTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGT
GCGGATCATGTCCTACCTGAACTTCACGAAGGACTTCGGCATCACCTACG
TACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAGCTACGCT
GACAACGAAGTAGACAGGCGTTCTACGACCGGGTTAGCTGTGACCGACGC
GTTGTTTGGGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGAGTGGGG
CGAAGGTCAAGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTAA
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